pycom17g12360

snRNA-activating protein complex

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
Physical Location & Seq
Forward (+)
10027912 .. 10033669
5758 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1533 bp
ATGATGACGGATAATGGCAGCGGCGGCGCCAACAATAATGGTGGTGATAAGGAAGAGGAGGAGGAGGAGGAGCTCTCGGTTCCCAGAGGTGGGCCCATCTACGTTCCCAATGTTGTGGGTCCCCTCACCAGCGTCCCTCTGTTCCTGTCTTCTATTCTTCAAGAACTTCAGGATTTAGAGGTAGAAGTGTCTTCAAATTCATCCCAAGTCTGTGACGAAGATATTTCGGTGGATGAGCTTAAAATCTTGACCGAGGAGGAGTTAGTCGATATGGCTATCACGGAAGCATTTAAGGATGATGAAGGTGCTCCCATTCTCTCGCCTATTTCAGAAGAGCCCTCCAATGAAAGGAGTGCAAATGATTCTGAGACTTCAAATGATAAAGATTATAAAACAAAACGAAGGAGGAGAAAGCGAACAAACGAATATAATCACGCTCTTGCGGACGATGAAGGTACCTCAAATCTTTCACCTATTCCAGAAGAGCTTTCCAGGAGAGTAAGTGATTCTGAGACATCAAATGATAAAGCTTGTACAAAGACATTAAGCAAGAGAAAAAGAACAAAGGCAAATGCGCATGCTCTTAATGAGACTTATATTGCAAGGGTGGAATGTGTTAAAAGAATAAAAGAAAAGCAAGAGGAAGACAAAGTGGCTGTGACTCTGCATTCTTTCAACTGTAGTTCGAAGACTACTGAACCTTCCATTGCTTCCTCAAGGACAATTGATAGGATGAAACCCCTCAGATCTGCAAGTTCATCAGTGAAGGTGAAGTCATCCAGCATTCAGGAATATGTACCTGTGCAATATCCAGACGTTGCTCTTTCCATTGAGGTTTACCAAAGTGTGCAAAAAAGGTTTAAGAACCAAGAGTTGTTGGTCCTTGGACAACAAACTTTGACCGAACTGAGGGATAAGATCGACTGCCTGACAGACCATGTGATGCAAAAGGCTGGTCAGCATGATCCTTCAGGATACTTCCTTGTAGAAGATACATTTTGCAATGATTTGAGGGATCCCTCCGCAGTAGATTATAGCAAACCTATATTCGATTGGCTTAAAGATTCTAAGGGCGATGCTGTAAAAAAATGGGAAAGCGTTGTAGCTGGAGAATTGAAAAAGAAGCAGAAGGCAGTCGTAGGAGATGTAACGGGGTCACAATTACCTAGTTTCAGAGCTGTTGACATGGACAAGACTAAATTCTCTGACTTGAAGTTCCGACTTGGTGCTGGATATCTGTTTTGTCACCAGGGAGACTGCAGACATACATTTGTAATTCGTGACATGAGATTGATTCATCCCCAAGATATACAAAACAGGGCAGCTTATCCAATACTCTTATTTCAAGTGAAGCCAGTTATACAAAAATGTTACGCTTGTAAAATATTTCGGGCAACAAAGGTAACTGTAGATGACAAGTGGGCTCAGGAGAACCCGTGTTACTTCTGCGACGATTGTTATTACCTCCTTCACTACAAGGACGGACATCTTCTATATGATGACTTTTCCGTGTATGATTATCACCATGACTAA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

511

Amino Acids

57.74

Weight (kDa)

5.27

Isoelectric Point (pI)

53.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SNAPC3 PF12251 290 - 507 1.1e-68 snRNA-activating protein complex (SNAPc), subunit 3
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 390
Acc16I TGCGCA 1 cut(s) 576
Acc65I GGTACC 1 cut(s) 455
AccB1I GGYRCC 2 cut(s) 26, 455
AciI CCGC 4 cut(s) 21, 24, 443, 1023
AclWI GGATC 3 cut(s) 959, 1010, 1023
AcsI RAATTY 2 cut(s) 196, 1199
AcuI CTGAAG 2 cut(s) 152, 954
AcyI GRCGYC 1 cut(s) 27
AfaI GTAC 3 cut(s) 457, 535, 798
AfiI CCNNNNNNNGG 4 cut(s) 89, 90, 348, 909
AgsI TTSAA 7 cut(s) 161, 195, 375, 676, 1117, 1213, 1346
AjnI CCWGG 2 cut(s) 491, 1248
AluBI AGCT 7 cut(s) 73, 238, 487, 530, 1106, 1178, 1325
AluI AGCT 7 cut(s) 73, 238, 487, 530, 1106, 1178, 1325
Alw21I GWGCWC 2 cut(s) 75, 310
Alw26I GTCTC 4 cut(s) 362, 506, 584, 1248
AlwI GGATC 3 cut(s) 959, 1010, 1023
AoxI GGCC 1 cut(s) 92
ApaI GGGCCC 1 cut(s) 96
ApeKI GCWGC 2 cut(s) 18, 1322
ApoI RAATTY 2 cut(s) 196, 1199
ArsI GACNNNNNNTTYG 2 cut(s) 940, 972
Asp718I GGTACC 1 cut(s) 455
AspLEI GCGC 2 cut(s) 29, 577
AspS9I GGNCC 4 cut(s) 92, 93, 119, 880
AsuHPI GGTGA 6 cut(s) 56, 118, 462, 781, 1238, 1514
AsuII TTCGAA 1 cut(s) 686
AvaII GGWCC 2 cut(s) 119, 880
BaeGI GKGCMC 1 cut(s) 96
BamHI GGATCC 1 cut(s) 1015
BanI GGYRCC 2 cut(s) 26, 455
BanII GRGCYC 4 cut(s) 75, 96, 339, 1426
BbsI GAAGAC 4 cut(s) 141, 183, 651, 695
Bbv12I GWGCWC 2 cut(s) 75, 310
BbvI GCAGC 2 cut(s) 30, 1334
BccI CCATC 1 cut(s) 104
BciT130I CCWGG 2 cut(s) 493, 1250
BciVI GTATCC 1 cut(s) 968
BcoDI GTCTC 4 cut(s) 362, 506, 584, 1248
BfaI CTAG 1 cut(s) 1167
BfmI CTRYAG 3 cut(s) 679, 1258, 1407
BfoI RGCGCY 1 cut(s) 30
BfuI GTATCC 1 cut(s) 968
BglII AGATCT 1 cut(s) 746
BisI GCNGC 4 cut(s) 19, 22, 25, 1323
BlsI GCNGC 4 cut(s) 20, 23, 26, 1324
Bme1390I CCNGG 2 cut(s) 493, 1250
Bme18I GGWCC 2 cut(s) 119, 880
BmgT120I GGNCC 4 cut(s) 92, 93, 119, 880
BmiI GGNNCC 7 cut(s) 28, 81, 94, 120, 121, 457, 1017
BmrFI CCNGG 2 cut(s) 493, 1250
BmsI GCATC 2 cut(s) 933, 1066
BpiI GAAGAC 4 cut(s) 141, 183, 651, 695
BplI GAGNNNNNCTC 2 cut(s) 59, 91
BpmI CTGGAG 1 cut(s) 1128
Bpu10I CCTNAGC 1 cut(s) 1425
Bpu14I TTCGAA 1 cut(s) 686
BpuEI CTTGAG 1 cut(s) 700
BsaHI GRCGYC 1 cut(s) 27
BsaJI CCNNGG 3 cut(s) 252, 883, 1249
BsaXI ACNNNNNCTCC 4 cut(s) 487, 517, 1421, 1451
Bsc4I CCNNNNNNNGG 4 cut(s) 89, 90, 348, 909
Bse1I ACTGG 1 cut(s) 1355
Bse3DI GCAATG 2 cut(s) 705, 1009
BseBI CCWGG 2 cut(s) 493, 1250
BseDI CCNNGG 3 cut(s) 252, 883, 1249
BseGI GGATG 6 cut(s) 200, 238, 301, 738, 776, 1297
BseLI CCNNNNNNNGG 4 cut(s) 89, 90, 348, 909
BseMI GCAATG 2 cut(s) 705, 1009
BseMII CTCAG 5 cut(s) 357, 501, 757, 899, 1439
BseNI ACTGG 1 cut(s) 1355
BseRI GAGGAG 8 cut(s) 71, 74, 77, 80, 83, 269, 272, 421
BseSI GKGCMC 1 cut(s) 96
BseXI GCAGC 2 cut(s) 30, 1334
BshFI GGCC 1 cut(s) 94
BshNI GGYRCC 2 cut(s) 26, 455
BsiHKAI GWGCWC 2 cut(s) 75, 310
BslFI GGGAC 2 cut(s) 105, 119
BslI CCNNNNNNNGG 4 cut(s) 89, 90, 348, 909
BsmAI GTCTC 4 cut(s) 362, 506, 584, 1248
BsmFI GGGAC 2 cut(s) 105, 119
BsmI GAATGC 2 cut(s) 667, 783
BsnI GGCC 1 cut(s) 94
Bsp119I TTCGAA 1 cut(s) 686
Bsp120I GGGCCC 1 cut(s) 92
Bsp1286I GDGCHC 5 cut(s) 75, 96, 310, 339, 1426
Bsp1407I TGTACA 1 cut(s) 533
Bsp143I GATC 4 cut(s) 746, 918, 964, 1015
BspACI CCGC 4 cut(s) 21, 24, 443, 1023
BspANI GGCC 1 cut(s) 94
BspCNI CTCAG 5 cut(s) 358, 502, 756, 900, 1438
BspLI GGNNCC 7 cut(s) 28, 81, 94, 120, 121, 457, 1017
BspMAI CTGCAG 1 cut(s) 1262
BspPI GGATC 3 cut(s) 959, 1010, 1023
BspQI GCTCTTC 2 cut(s) 327, 477
BspT104I TTCGAA 1 cut(s) 686
BspT107I GGYRCC 2 cut(s) 26, 455
BsrDI GCAATG 2 cut(s) 705, 1009
BsrGI TGTACA 1 cut(s) 533
BsrI ACTGG 1 cut(s) 1355
BssECI CCNNGG 3 cut(s) 252, 883, 1249
BssMI GATC 4 cut(s) 746, 918, 964, 1015
BssNI GRCGYC 1 cut(s) 27
BssT1I CCWWGG 1 cut(s) 883
Bst2UI CCWGG 2 cut(s) 493, 1250
Bst4CI ACNGT 2 cut(s) 680, 1408
Bst6I CTCTTC 3 cut(s) 48, 327, 477
BstACI GRCGYC 1 cut(s) 27
BstAUI TGTACA 1 cut(s) 533
BstBI TTCGAA 1 cut(s) 686
BstC8I GCNNGC 1 cut(s) 579
BstDEI CTNAG 6 cut(s) 366, 510, 743, 908, 1068, 1425
BstF5I GGATG 6 cut(s) 200, 238, 301, 738, 776, 1297
BstH2I RGCGCY 1 cut(s) 30
BstHHI GCGC 2 cut(s) 29, 577
BstKTI GATC 4 cut(s) 749, 921, 967, 1018
BstMAI GTCTC 4 cut(s) 362, 506, 584, 1248
BstMBI GATC 4 cut(s) 746, 918, 964, 1015
BstMWI GCNNNNNNNGC 1 cut(s) 24
BstNI CCWGG 2 cut(s) 493, 1250
BstNSI RCATGY 1 cut(s) 581
BstSCI CCNGG 2 cut(s) 491, 1248
BstSFI CTRYAG 3 cut(s) 679, 1258, 1407
BstSLI GKGCMC 1 cut(s) 96
BstV1I GCAGC 2 cut(s) 30, 1334
BstV2I GAAGAC 4 cut(s) 141, 183, 651, 695
BstX2I RGATCY 2 cut(s) 746, 1015
BstXI CCANNNNNNTGG 1 cut(s) 115
BstYI RGATCY 2 cut(s) 746, 1015
BsuI GTATCC 1 cut(s) 968
BsuRI GGCC 1 cut(s) 94
BtgZI GCGATG 1 cut(s) 1089
BtsCI GGATG 6 cut(s) 200, 238, 301, 738, 776, 1297
BtsIMutI CAGTG 1 cut(s) 768
Cac8I GCNNGC 1 cut(s) 579
CfoI GCGC 2 cut(s) 29, 577
Cfr13I GGNCC 4 cut(s) 92, 93, 119, 880
CseI GACGC 1 cut(s) 121
Csp6I GTAC 3 cut(s) 456, 534, 797
CspCI CAANNNNNGTGG 2 cut(s) 22, 57
CviAII CATG 6 cut(s) 578, 938, 962, 1186, 1285, 1526
CviQI GTAC 3 cut(s) 456, 534, 797
DdeI CTNAG 6 cut(s) 366, 510, 743, 908, 1068, 1425
DinI GGCGCC 1 cut(s) 28
DpnI GATC 4 cut(s) 748, 920, 966, 1017
DpnII GATC 4 cut(s) 746, 918, 964, 1015
Eam1104I CTCTTC 3 cut(s) 48, 327, 477
EarI CTCTTC 3 cut(s) 48, 327, 477
Ecl136II GAGCTC 1 cut(s) 73
Eco130I CCWWGG 1 cut(s) 883
Eco24I GRGCYC 4 cut(s) 75, 96, 339, 1426
Eco32I GATATC 1 cut(s) 1235
Eco47I GGWCC 2 cut(s) 119, 880
Eco53kI GAGCTC 1 cut(s) 73
Eco57I CTGAAG 2 cut(s) 152, 954
EcoICRI GAGCTC 1 cut(s) 73
EcoO109I RGGNCCY 1 cut(s) 119
EcoRII CCWGG 2 cut(s) 491, 1248
EcoRV GATATC 1 cut(s) 1235
EcoT14I CCWWGG 1 cut(s) 883
EcoT38I GRGCYC 4 cut(s) 75, 96, 339, 1426
EgeI GGCGCC 1 cut(s) 28
EheI GGCGCC 1 cut(s) 28
ErhI CCWWGG 1 cut(s) 883
FaeI CATG 6 cut(s) 581, 941, 965, 1189, 1288, 1529
FaqI GGGAC 2 cut(s) 105, 119
FatI CATG 6 cut(s) 577, 937, 961, 1185, 1284, 1525
Fnu4HI GCNGC 4 cut(s) 19, 22, 25, 1323
FokI GGATG 6 cut(s) 187, 245, 308, 745, 763, 1284
FriOI GRGCYC 4 cut(s) 75, 96, 339, 1426
Fsp4HI GCNGC 4 cut(s) 19, 22, 25, 1323
FspAI RTGCGCAY 1 cut(s) 576
FspBI CTAG 1 cut(s) 1167
FspI TGCGCA 1 cut(s) 576
GlaI GCGC 2 cut(s) 28, 576
GluI GCNGC 4 cut(s) 19, 22, 25, 1323
GsuI CTGGAG 1 cut(s) 1128
HaeII RGCGCY 1 cut(s) 30
HaeIII GGCC 1 cut(s) 94
HgaI GACGC 1 cut(s) 121
HhaI GCGC 2 cut(s) 29, 577
Hin1I GRCGYC 1 cut(s) 27
Hin1II CATG 6 cut(s) 581, 941, 965, 1189, 1288, 1529
Hin6I GCGC 2 cut(s) 27, 575
HinP1I GCGC 2 cut(s) 27, 575
HincII GTYRAC 1 cut(s) 1183
HindII GTYRAC 1 cut(s) 1183
HindIII AAGCTT 1 cut(s) 528
HinfI GANTC 5 cut(s) 362, 506, 661, 1064, 1294
HphI GGTGA 6 cut(s) 56, 118, 462, 781, 1238, 1514
Hpy166II GTNNAC 2 cut(s) 838, 1183
Hpy188I TCNGA 7 cut(s) 331, 367, 511, 746, 1175, 1207, 1220
Hpy188III TCNNGA 9 cut(s) 161, 170, 247, 479, 788, 812, 972, 1280, 1427
Hpy8I GTNNAC 2 cut(s) 838, 1183
Hpy99I CGWCG 1 cut(s) 1454
HpyAV CCTTC 8 cut(s) 296, 396, 446, 711, 760, 978, 1123, 1478
HpyCH4III ACNGT 2 cut(s) 680, 1408
HpyCH4IV ACGT 2 cut(s) 102, 816
HpyCH4V TGCA 9 cut(s) 356, 602, 667, 752, 805, 850, 946, 1002, 1260
HpyF10VI GCNNNNNNNGC 1 cut(s) 24
HpyF3I CTNAG 6 cut(s) 366, 510, 743, 908, 1068, 1425
HpySE526I ACGT 2 cut(s) 102, 816
Hsp92I GRCGYC 1 cut(s) 27
Hsp92II CATG 6 cut(s) 581, 941, 965, 1189, 1288, 1529
HspAI GCGC 2 cut(s) 27, 575
KasI GGCGCC 1 cut(s) 26
KflI GGGWCCC 1 cut(s) 119
KpnI GGTACC 1 cut(s) 459
Kzo9I GATC 4 cut(s) 746, 918, 964, 1015
LguI GCTCTTC 2 cut(s) 327, 477
LmnI GCTCC 2 cut(s) 70, 313
Lsp1109I GCAGC 2 cut(s) 30, 1334
LweI GCATC 2 cut(s) 933, 1066
MaeI CTAG 1 cut(s) 1167
MaeII ACGT 2 cut(s) 102, 816
MaeIII GTNAC 9 cut(s) 212, 658, 1147, 1155, 1244, 1280, 1370, 1402, 1439
MalI GATC 4 cut(s) 748, 920, 966, 1017
MboI GATC 4 cut(s) 746, 918, 964, 1015
MfeI CAATTG 1 cut(s) 723
MflI RGATCY 2 cut(s) 746, 1015
MhlI GDGCHC 5 cut(s) 75, 96, 310, 339, 1426
MluCI AATT 6 cut(s) 196, 723, 1112, 1160, 1199, 1275
Mly113I GGCGCC 1 cut(s) 27
MlyI GAGTC 1 cut(s) 655
MmeI TCCRAC 1 cut(s) 1243
MseI TTAA 7 cut(s) 240, 291, 545, 585, 618, 861, 1059
MspA1I CMGCKG 1 cut(s) 21
MspR9I CCNGG 2 cut(s) 493, 1250
MunI CAATTG 1 cut(s) 723
Mva1269I GAATGC 2 cut(s) 667, 783
MvaI CCWGG 2 cut(s) 493, 1250
MwoI GCNNNNNNNGC 1 cut(s) 24
NarI GGCGCC 1 cut(s) 27
NdeII GATC 4 cut(s) 746, 918, 964, 1015
NlaIII CATG 6 cut(s) 581, 941, 965, 1189, 1288, 1529
NlaIV GGNNCC 7 cut(s) 28, 81, 94, 120, 121, 457, 1017
NmuCI GTSAC 5 cut(s) 212, 658, 1155, 1244, 1280
NsbI TGCGCA 1 cut(s) 576
NspI RCATGY 1 cut(s) 581
NspV TTCGAA 1 cut(s) 686
PaeI GCATGC 1 cut(s) 581
PciSI GCTCTTC 2 cut(s) 327, 477
PctI GAATGC 2 cut(s) 667, 783
PfeI GAWTC 4 cut(s) 362, 506, 1064, 1294
PfoI TCCNGGA 1 cut(s) 491
PkrI GCNGC 4 cut(s) 20, 23, 26, 1324
PleI GAGTC 1 cut(s) 655
PluTI GGCGCC 1 cut(s) 30
PpsI GAGTC 1 cut(s) 655
PpuMI RGGWCCY 1 cut(s) 119
PsiI TTATAA 1 cut(s) 390
Psp124BI GAGCTC 1 cut(s) 75
Psp5II RGGWCCY 1 cut(s) 119
Psp6I CCWGG 2 cut(s) 491, 1248
PspGI CCWGG 2 cut(s) 491, 1248
PspN4I GGNNCC 7 cut(s) 28, 81, 94, 120, 121, 457, 1017
PspOMI GGGCCC 1 cut(s) 92
PspPI GGNCC 4 cut(s) 92, 93, 119, 880
PspPPI RGGWCCY 1 cut(s) 119
PsrI GAACNNNNNNTAC 2 cut(s) 1424, 1456
PstI CTGCAG 1 cut(s) 1262
PsuI RGATCY 2 cut(s) 746, 1015
RsaI GTAC 3 cut(s) 457, 535, 798
RsaNI GTAC 3 cut(s) 456, 534, 797
SacI GAGCTC 1 cut(s) 75
SapI GCTCTTC 2 cut(s) 327, 477
SaqAI TTAA 7 cut(s) 240, 291, 545, 585, 618, 861, 1059
SatI GCNGC 4 cut(s) 19, 22, 25, 1323
Sau3AI GATC 4 cut(s) 746, 918, 964, 1015
Sau96I GGNCC 4 cut(s) 92, 93, 119, 880
SchI GAGTC 1 cut(s) 655
ScrFI CCNGG 2 cut(s) 493, 1250
SduI GDGCHC 5 cut(s) 75, 96, 310, 339, 1426
SfaNI GCATC 2 cut(s) 933, 1066
SfcI CTRYAG 3 cut(s) 679, 1258, 1407
SfoI GGCGCC 1 cut(s) 28
SfuI TTCGAA 1 cut(s) 686
SinI GGWCC 2 cut(s) 119, 880
SmlI CTYRAG 1 cut(s) 715
SmoI CTYRAG 1 cut(s) 715
SphI GCATGC 1 cut(s) 581
Sse9I AATT 6 cut(s) 196, 723, 1112, 1160, 1199, 1275
SsiI CCGC 4 cut(s) 21, 24, 443, 1023
SspDI GGCGCC 1 cut(s) 26
SspI AATATT 1 cut(s) 1386
SspMI CTAG 1 cut(s) 1167
SstI GAGCTC 1 cut(s) 75
StyD4I CCNGG 2 cut(s) 491, 1248
StyI CCWWGG 1 cut(s) 883
TaaI ACNGT 2 cut(s) 680, 1408
TaiI ACGT 2 cut(s) 105, 819
TaqI TCGA 4 cut(s) 267, 686, 921, 1050
TaqII GACCGA 2 cut(s) 266, 917
TasI AATT 6 cut(s) 196, 723, 1112, 1160, 1199, 1275
TatI WGTACW 1 cut(s) 533
TauI GCSGC 2 cut(s) 24, 27
TfiI GAWTC 4 cut(s) 362, 506, 1064, 1294
Tru1I TTAA 7 cut(s) 240, 291, 545, 585, 618, 861, 1059
Tru9I TTAA 7 cut(s) 240, 291, 545, 585, 618, 861, 1059
TscAI CASTG 1 cut(s) 768
TseFI GTSAC 5 cut(s) 212, 658, 1155, 1244, 1280
TseI GCWGC 2 cut(s) 18, 1322
Tsp45I GTSAC 5 cut(s) 212, 658, 1155, 1244, 1280
TspDTI ATGAA 7 cut(s) 189, 315, 360, 465, 747, 749, 1286
TspGWI ACGGA 4 cut(s) 23, 296, 1497, 1498
TspRI CASTG 1 cut(s) 768
VpaK11BI GGWCC 2 cut(s) 119, 880
XapI RAATTY 2 cut(s) 196, 1199
XceI RCATGY 1 cut(s) 581
XspI CTAG 1 cut(s) 1167
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.