Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0003615

Physical Location & Seq

Genomic Coordinates Forward (+)

20862661 .. 20863898

Gene Structure 1238 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

ATGACTGTACTCAAAGGTGCAAGTGCAAGCTCCTTTGGAGGAGTTGAAGATGGCGGGACGGCTAAGAAATCAGATCCTAGCAACACTTCTCAATCACATGATGAGAATTTGAAGGGTAAAAATATTTCTTTTGGTTCTACACAAGAGCGCAGTGAAGTTTCCTCTACCAGAGAGATTGGGGCCAGTGATTCAACAAATGAAGGCACTGGTAAGAAGCTATCAGCAAAATCCCAGTTGTTCCAGTTATGCGTTGCAAGAAAATGGAAGAACCCCACATTCGAGTGCTGGAAAGAGGAAGGACCGCTCCACATGAGACTGTTCACCTTCAAGGTTATTGTTGAGATGGACGACGAATCAAAAACCCTTTTGGAATGCTTTAGCTCTCCACATTCAAAAAAGAAGGCAGCAGCAGAGCATGCAGCTGAAGGAGCGTTATGGTACTTGAAGAACGTTGGTTATCACTCGAGGGGTCGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DND1_DSRM

Protein Analysis

159

Amino Acids

17.29

Weight (kDa)

8.73

Isoelectric Point (pI)

36.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DND1_DSRM	PF14709	74 - 149	2.3e-16	double strand RNA binding domain from DEAD END PROTEIN 1
dsrm	PF00035	75 - 145	8.3e-06	Double-stranded RNA binding motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003615)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80650 AT1G80650 AT1G80650 AT1G80650 AT4G00420 AT4G00420 AT4G00420 AT4G00420 AT4G00420
fragaria_vesca	FvH4_2g22602
malus_domestica	MD17G1220100.v1.1
prunus_persica	Prupe.3G095800_v2.0.a1 Prupe.3G095800_v2.0.a1
pyrus_communis	pycom17g22500
rosa_laevigata	RLG00000012284 RLG00000019337
rosa_multiflora	Rmu_co8221574.1_g000001 Rmu_sc0007236.1_g000004
rosa_roxburghii	Rroxscaffold_2G00111090 Rroxscaffold_7G00177730 Rroxscaffold_7G00177760
rosa_rugosa	Rorug02G0312000 Rorug06G0205600 Rorug06G0205600
rosa_samantha	Rh2AG364600 Rh2BG370300 Rh2CG276500 Rh2CG347900 Rh6AG317100 Rh6BG323700 Rh6BG324100 Rh6CG330300 Rh6DG315500
rosa_wichuraiana	Rw2G029720 Rw6G027350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	304
AciI	CCGC	2 cut(s)	54, 302
AclI	AACGTT	1 cut(s)	450
AclWI	GGATC	1 cut(s)	68
AcsI	RAATTY	1 cut(s)	106
AcuI	CTGAAG	1 cut(s)	444
AfaI	GTAC	2 cut(s)	9, 440
AgsI	TTSAA	6 cut(s)	47, 112, 192, 328, 393, 445
AluBI	AGCT	4 cut(s)	30, 217, 381, 422
AluI	AGCT	4 cut(s)	30, 217, 381, 422
Alw26I	GTCTC	1 cut(s)	307
AlwI	GGATC	1 cut(s)	68
Ama87I	CYCGRG	1 cut(s)	463
AoxI	GGCC	1 cut(s)	180
ApeKI	GCWGC	3 cut(s)	404, 407, 419
ApoI	RAATTY	1 cut(s)	106
AspLEI	GCGC	1 cut(s)	150
AspS9I	GGNCC	2 cut(s)	180, 299
AsuHPI	GGTGA	1 cut(s)	313
AvaI	CYCGRG	1 cut(s)	463
AvaII	GGWCC	1 cut(s)	299
BbvI	GCAGC	3 cut(s)	416, 419, 431
BccI	CCATC	2 cut(s)	44, 337
BceAI	ACGGC	1 cut(s)	75
BcoDI	GTCTC	1 cut(s)	307
BfaI	CTAG	1 cut(s)	78
BisI	GCNGC	3 cut(s)	405, 408, 420
BlsI	GCNGC	3 cut(s)	406, 409, 421
Bme18I	GGWCC	1 cut(s)	299
BmeT110I	CYCGRG	1 cut(s)	463
BmgT120I	GGNCC	2 cut(s)	180, 299
BmiI	GGNNCC	1 cut(s)	181
BmrI	ACTGGG	1 cut(s)	226
BmuI	ACTGGG	1 cut(s)	226
Bse1I	ACTGG	4 cut(s)	183, 211, 232, 241
BseNI	ACTGG	4 cut(s)	183, 211, 232, 241
BseRI	GAGGAG	1 cut(s)	54
BseXI	GCAGC	3 cut(s)	416, 419, 431
BshFI	GGCC	1 cut(s)	182
BsiHKCI	CYCGRG	1 cut(s)	463
BslFI	GGGAC	1 cut(s)	70
BsmAI	GTCTC	1 cut(s)	307
BsmFI	GGGAC	1 cut(s)	70
BsmI	GAATGC	1 cut(s)	377
BsnI	GGCC	1 cut(s)	182
BsoBI	CYCGRG	1 cut(s)	463
Bsp143I	GATC	1 cut(s)	73
BspACI	CCGC	2 cut(s)	54, 302
BspANI	GGCC	1 cut(s)	182
BspLI	GGNNCC	1 cut(s)	181
BspPI	GGATC	1 cut(s)	68
BsrBI	CCGCTC	1 cut(s)	304
BsrI	ACTGG	4 cut(s)	183, 211, 232, 241
BssMI	GATC	1 cut(s)	73
Bst4CI	ACNGT	2 cut(s)	7, 318
BstAPI	GCANNNNNTGC	1 cut(s)	416
BstC8I	GCNNGC	2 cut(s)	28, 417
BstDEI	CTNAG	1 cut(s)	63
BstHHI	GCGC	1 cut(s)	150
BstKTI	GATC	1 cut(s)	76
BstMAI	GTCTC	1 cut(s)	307
BstMBI	GATC	1 cut(s)	73
BstMWI	GCNNNNNNNGC	2 cut(s)	416, 428
BstNSI	RCATGY	1 cut(s)	419
BstV1I	GCAGC	3 cut(s)	416, 419, 431
BstX2I	RGATCY	1 cut(s)	73
BstYI	RGATCY	1 cut(s)	73
BsuRI	GGCC	1 cut(s)	182
BtsI	GCAGTG	1 cut(s)	157
BtsIMutI	CAGTG	3 cut(s)	157, 190, 204
Cac8I	GCNNGC	2 cut(s)	28, 417
CfoI	GCGC	1 cut(s)	150
Cfr13I	GGNCC	2 cut(s)	180, 299
Csp6I	GTAC	2 cut(s)	8, 439
CviAII	CATG	3 cut(s)	98, 310, 416
CviJI	RGCY	6 cut(s)	30, 62, 182, 217, 381, 422
CviKI_1	RGCY	6 cut(s)	30, 62, 182, 217, 381, 422
CviQI	GTAC	2 cut(s)	8, 439
DdeI	CTNAG	1 cut(s)	63
DpnI	GATC	1 cut(s)	75
DpnII	GATC	1 cut(s)	73
Eco47I	GGWCC	1 cut(s)	299
Eco57I	CTGAAG	1 cut(s)	444
Eco88I	CYCGRG	1 cut(s)	463
FaeI	CATG	3 cut(s)	101, 313, 419
FaiI	YATR	5 cut(s)	99, 247, 311, 417, 436
FaqI	GGGAC	1 cut(s)	70
FatI	CATG	3 cut(s)	97, 309, 415
FauI	CCCGC	1 cut(s)	47
Fnu4HI	GCNGC	3 cut(s)	405, 408, 420
Fsp4HI	GCNGC	3 cut(s)	405, 408, 420
FspBI	CTAG	1 cut(s)	78
GlaI	GCGC	1 cut(s)	149
GluI	GCNGC	3 cut(s)	405, 408, 420
HaeIII	GGCC	1 cut(s)	182
HhaI	GCGC	1 cut(s)	150
Hin1II	CATG	3 cut(s)	101, 313, 419
Hin6I	GCGC	1 cut(s)	148
HinP1I	GCGC	1 cut(s)	148
HinfI	GANTC	2 cut(s)	188, 353
HphI	GGTGA	1 cut(s)	313
Hpy166II	GTNNAC	1 cut(s)	321
Hpy188I	TCNGA	1 cut(s)	73
Hpy8I	GTNNAC	1 cut(s)	321
Hpy99I	CGWCG	1 cut(s)	353
HpyAV	CCTTC	6 cut(s)	106, 194, 290, 334, 394, 419
HpyCH4III	ACNGT	2 cut(s)	7, 318
HpyCH4IV	ACGT	1 cut(s)	450
HpyCH4V	TGCA	4 cut(s)	20, 26, 254, 419
HpyF10VI	GCNNNNNNNGC	2 cut(s)	416, 428
HpyF3I	CTNAG	1 cut(s)	63
HpySE526I	ACGT	1 cut(s)	450
Hsp92II	CATG	3 cut(s)	101, 313, 419
HspAI	GCGC	1 cut(s)	148
Kzo9I	GATC	1 cut(s)	73
LmnI	GCTCC	3 cut(s)	35, 309, 428
LpnPI	CCDG	6 cut(s)	181, 192, 196, 245, 254, 271
Lsp1109I	GCAGC	3 cut(s)	416, 419, 431
MaeI	CTAG	1 cut(s)	78
MaeII	ACGT	1 cut(s)	450
MalI	GATC	1 cut(s)	75
MbiI	CCGCTC	1 cut(s)	304
MboI	GATC	1 cut(s)	73
MboII	GAAGA	3 cut(s)	59, 277, 457
MflI	RGATCY	1 cut(s)	73
MluCI	AATT	1 cut(s)	106
MnlI	CCTC	4 cut(s)	32, 172, 286, 459
MslI	CAYNNNNRTG	1 cut(s)	280
MspA1I	CMGCKG	1 cut(s)	422
Mva1269I	GAATGC	1 cut(s)	377
MwoI	GCNNNNNNNGC	2 cut(s)	416, 428
NdeII	GATC	1 cut(s)	73
NlaIII	CATG	3 cut(s)	101, 313, 419
NlaIV	GGNNCC	1 cut(s)	181
NspI	RCATGY	1 cut(s)	419
PaeI	GCATGC	1 cut(s)	419
PaeR7I	CTCGAG	1 cut(s)	463
PctI	GAATGC	1 cut(s)	377
PfeI	GAWTC	2 cut(s)	188, 353
PkrI	GCNGC	3 cut(s)	406, 409, 421
Psp1406I	AACGTT	1 cut(s)	450
PspN4I	GGNNCC	1 cut(s)	181
PspPI	GGNCC	2 cut(s)	180, 299
PspXI	VCTCGAGB	1 cut(s)	463
PsuI	RGATCY	1 cut(s)	73
PvuII	CAGCTG	1 cut(s)	422
RsaI	GTAC	2 cut(s)	9, 440
RsaNI	GTAC	2 cut(s)	8, 439
RseI	CAYNNNNRTG	1 cut(s)	280
SatI	GCNGC	3 cut(s)	405, 408, 420
Sau3AI	GATC	1 cut(s)	73
Sau96I	GGNCC	2 cut(s)	180, 299
SetI	ASST	8 cut(s)	19, 32, 219, 326, 333, 383, 424, 453
Sfr274I	CTCGAG	1 cut(s)	463
SinI	GGWCC	1 cut(s)	299
SlaI	CTCGAG	1 cut(s)	463
SmiMI	CAYNNNNRTG	1 cut(s)	280
SmlI	CTYRAG	1 cut(s)	463
SmoI	CTYRAG	1 cut(s)	463
SphI	GCATGC	1 cut(s)	419
Sse9I	AATT	1 cut(s)	106
SsiI	CCGC	2 cut(s)	54, 302
SspI	AATATT	1 cut(s)	124
SspMI	CTAG	1 cut(s)	78
TaaI	ACNGT	2 cut(s)	7, 318
TaiI	ACGT	1 cut(s)	453
TaqI	TCGA	2 cut(s)	279, 464
TasI	AATT	1 cut(s)	106
TatI	WGTACW	1 cut(s)	7
TfiI	GAWTC	2 cut(s)	188, 353
TscAI	CASTG	3 cut(s)	157, 190, 211
TseI	GCWGC	3 cut(s)	404, 407, 419
TspDTI	ATGAA	1 cut(s)	213
TspRI	CASTG	3 cut(s)	157, 190, 211
VpaK11BI	GGWCC	1 cut(s)	299
XapI	RAATTY	1 cut(s)	106
XceI	RCATGY	1 cut(s)	419
XhoI	CTCGAG	1 cut(s)	463
XspI	CTAG	1 cut(s)	78

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.