pycom17g22600

Sister chromatid cohesion protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0001637
Physical Location & Seq
Forward (+)
20997134 .. 21001541
4408 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 777 bp
ATGCTAAAAAAGCGGTATCAAAATCATTTCTCTTATTTTAGGCCAGCGTTCGAGAACGAAAGCGCCAATGTGCACAAAAGATGGGATTTTGATGGCGTGCGAGGCATAACCGAAAAAACCCAGTACACTAACTGGAGAGAGAGAGAGAGAGTAGCGTGCCCAACGCCCGGGCTTAAATCCCTAAAACTTGGCTGCTTTGTTTTCTGGGTGGTTGTTGAAATGTCTTGTTCCTCTGAGAAAGAGCTGGAGGAGCAGCTCAAGGAGGCTGGAAATATTCTCCTCAACCCTCCTTCGGCTACCGAGGAGCTTCTCAAATTCCTTGGTGAAGCTGAGGGTTTGTTGTCAAATGTTGAGCAAGCACCACACAGGTCCATGCAAGATGCACTCCTACCGATAATGAAGGCATTAATTTCTGATGAGCTGTTTAGGCACTCAGATATGGATGTGAAGCTATATGTTGCTTCTTGCATTACTGAGCTTACGAGAATAACAGCACCGGTTCCTCCATACAATGATGAATGGATGAAGGAAATCTTTCAGCTGACTGTAGCAGCTTTTGAGAAACTGTCGTATGTTTCCAGTCCCTTTTATAGAAAGGCAGTTTCCATTCTTCATATTGTGGCAAAGGTCAGGTCAAGCTTGCTGATGCTGGACCTTGGTTGCAGTGCATTAATTCTTAAGATGTTTCAACATTTCCTTAAATTAACCCATAGGGTCCAATCATCCACATTCTGTATTTTCAGCCATGGAAACTATTATGACCATGGTTTTAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PEARLI-4

Protein Analysis

259

Amino Acids

29.78

Weight (kDa)

7.66

Isoelectric Point (pI)

49.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PDS5 PF20168 101 - 240 6.8e-33 Sister chromatid cohesion protein PDS5 protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 13
AcsI RAATTY 1 cut(s) 314
AfaI GTAC 1 cut(s) 125
AfiI CCNNNNNNNGG 2 cut(s) 167, 292
AflII CTTAAG 1 cut(s) 677
AgeI ACCGGT 1 cut(s) 496
AgsI TTSAA 2 cut(s) 218, 689
Alw21I GWGCWC 1 cut(s) 75
Alw44I GTGCAC 1 cut(s) 71
Ama87I CYCGRG 1 cut(s) 167
AoxI GGCC 1 cut(s) 41
ApaLI GTGCAC 1 cut(s) 71
ApeKI GCWGC 3 cut(s) 192, 253, 551
ApoI RAATTY 1 cut(s) 314
ArsI GACNNNNNNTTYG 2 cut(s) 617, 649
AseI ATTAAT 2 cut(s) 407, 671
AsiGI ACCGGT 1 cut(s) 496
Asp700I GAANNNNTTC 1 cut(s) 534
AspLEI GCGC 1 cut(s) 65
AspS9I GGNCC 3 cut(s) 369, 652, 715
AsuC2I CCSGG 2 cut(s) 168, 169
AsuHPI GGTGA 1 cut(s) 335
AvaI CYCGRG 1 cut(s) 167
AvaII GGWCC 3 cut(s) 369, 652, 715
BaeGI GKGCMC 2 cut(s) 75, 161
Bbv12I GWGCWC 1 cut(s) 75
BbvCI CCTCAGC 1 cut(s) 330
BbvI GCAGC 3 cut(s) 179, 265, 563
BccI CCATC 2 cut(s) 75, 86
BcnI CCSGG 2 cut(s) 168, 169
BfmI CTRYAG 1 cut(s) 546
BfoI RGCGCY 1 cut(s) 66
BfrI CTTAAG 1 cut(s) 677
BisI GCNGC 3 cut(s) 193, 254, 552
BlsI GCNGC 3 cut(s) 194, 255, 553
Bme1390I CCNGG 2 cut(s) 168, 169
Bme18I GGWCC 3 cut(s) 369, 652, 715
BmeT110I CYCGRG 1 cut(s) 167
BmgT120I GGNCC 3 cut(s) 369, 652, 715
BmiI GGNNCC 2 cut(s) 501, 716
BmrFI CCNGG 2 cut(s) 168, 169
BmrI ACTGGG 1 cut(s) 115
BmsI GCATC 2 cut(s) 370, 636
BmuI ACTGGG 1 cut(s) 115
BpmI CTGGAG 2 cut(s) 154, 266
Bpu10I CCTNAGC 1 cut(s) 330
BpuEI CTTGAG 1 cut(s) 242
BpuMI CCSGG 2 cut(s) 168, 169
BsaJI CCNNGG 6 cut(s) 167, 300, 319, 655, 745, 763
BsaWI WCCGGW 1 cut(s) 496
Bsc4I CCNNNNNNNGG 2 cut(s) 167, 292
Bse118I RCCGGY 1 cut(s) 496
Bse1I ACTGG 3 cut(s) 121, 137, 579
BseDI CCNNGG 6 cut(s) 167, 300, 319, 655, 745, 763
BseGI GGATG 3 cut(s) 448, 528, 722
BseLI CCNNNNNNNGG 2 cut(s) 167, 292
BseMII CTCAG 4 cut(s) 225, 321, 447, 465
BseNI ACTGG 3 cut(s) 121, 137, 579
BseRI GAGGAG 3 cut(s) 263, 269, 317
BseSI GKGCMC 2 cut(s) 75, 161
BseXI GCAGC 3 cut(s) 179, 265, 563
BshFI GGCC 1 cut(s) 43
BshTI ACCGGT 1 cut(s) 496
BsiHKAI GWGCWC 1 cut(s) 75
BsiHKCI CYCGRG 1 cut(s) 167
BsiSI CCGG 2 cut(s) 168, 497
BslFI GGGAC 1 cut(s) 567
BslI CCNNNNNNNGG 2 cut(s) 167, 292
BsmFI GGGAC 1 cut(s) 567
BsnI GGCC 1 cut(s) 43
BsoBI CYCGRG 1 cut(s) 167
Bsp1286I GDGCHC 2 cut(s) 75, 161
Bsp19I CCATGG 2 cut(s) 745, 763
BspACI CCGC 1 cut(s) 13
BspANI GGCC 1 cut(s) 43
BspCNI CTCAG 4 cut(s) 226, 322, 446, 466
BspLI GGNNCC 2 cut(s) 501, 716
BspTI CTTAAG 1 cut(s) 677
BsrFI RCCGGY 1 cut(s) 496
BsrI ACTGG 3 cut(s) 121, 137, 579
BssAI RCCGGY 1 cut(s) 496
BssECI CCNNGG 6 cut(s) 167, 300, 319, 655, 745, 763
BssT1I CCWWGG 4 cut(s) 319, 655, 745, 763
Bst4CI ACNGT 2 cut(s) 547, 567
BstAFI CTTAAG 1 cut(s) 677
BstC8I GCNNGC 5 cut(s) 45, 98, 157, 357, 641
BstDEI CTNAG 4 cut(s) 234, 330, 433, 474
BstDSI CCRYGG 2 cut(s) 745, 763
BstF5I GGATG 3 cut(s) 448, 528, 722
BstH2I RGCGCY 1 cut(s) 66
BstHHI GCGC 1 cut(s) 65
BstMWI GCNNNNNNNGC 4 cut(s) 10, 102, 250, 427
BstSCI CCNGG 2 cut(s) 166, 167
BstSFI CTRYAG 1 cut(s) 546
BstSLI GKGCMC 2 cut(s) 75, 161
BstV1I GCAGC 3 cut(s) 179, 265, 563
BsuRI GGCC 1 cut(s) 43
BtgI CCRYGG 2 cut(s) 745, 763
BtsCI GGATG 3 cut(s) 448, 528, 722
BtsI GCAGTG 1 cut(s) 670
BtsIMutI CAGTG 1 cut(s) 670
Cac8I GCNNGC 5 cut(s) 45, 98, 157, 357, 641
CfoI GCGC 1 cut(s) 65
Cfr10I RCCGGY 1 cut(s) 496
Cfr13I GGNCC 3 cut(s) 369, 652, 715
Cfr9I CCCGGG 1 cut(s) 167
Csp6I GTAC 1 cut(s) 124
CspAI ACCGGT 1 cut(s) 496
CviAII CATG 3 cut(s) 373, 746, 764
CviQI GTAC 1 cut(s) 124
DdeI CTNAG 4 cut(s) 234, 330, 433, 474
Eco130I CCWWGG 4 cut(s) 319, 655, 745, 763
Eco47I GGWCC 3 cut(s) 369, 652, 715
Eco88I CYCGRG 1 cut(s) 167
EcoT14I CCWWGG 4 cut(s) 319, 655, 745, 763
ErhI CCWWGG 4 cut(s) 319, 655, 745, 763
FaeI CATG 3 cut(s) 376, 749, 767
FalI AAGNNNNNCTT 2 cut(s) 518, 550
FaqI GGGAC 1 cut(s) 567
FatI CATG 3 cut(s) 372, 745, 763
Fnu4HI GCNGC 3 cut(s) 193, 254, 552
FokI GGATG 3 cut(s) 455, 535, 709
Fsp4HI GCNGC 3 cut(s) 193, 254, 552
GlaI GCGC 1 cut(s) 64
GluI GCNGC 3 cut(s) 193, 254, 552
GsuI CTGGAG 2 cut(s) 154, 266
HaeII RGCGCY 1 cut(s) 66
HaeIII GGCC 1 cut(s) 43
HapII CCGG 2 cut(s) 168, 497
HhaI GCGC 1 cut(s) 65
Hin1II CATG 3 cut(s) 376, 749, 767
Hin6I GCGC 1 cut(s) 63
HinP1I GCGC 1 cut(s) 63
HindIII AAGCTT 1 cut(s) 637
HpaII CCGG 2 cut(s) 168, 497
HphI GGTGA 1 cut(s) 335
Hpy166II GTNNAC 2 cut(s) 73, 126
Hpy188I TCNGA 3 cut(s) 235, 415, 436
Hpy188III TCNNGA 1 cut(s) 52
Hpy8I GTNNAC 2 cut(s) 73, 126
HpyAV CCTTC 3 cut(s) 300, 394, 520
HpyCH4III ACNGT 2 cut(s) 547, 567
HpyCH4V TGCA 6 cut(s) 73, 376, 383, 468, 663, 668
HpyF10VI GCNNNNNNNGC 4 cut(s) 10, 102, 250, 427
HpyF3I CTNAG 4 cut(s) 234, 330, 433, 474
Hsp92II CATG 3 cut(s) 376, 749, 767
HspAI GCGC 1 cut(s) 63
LmnI GCTCC 2 cut(s) 250, 304
Lsp1109I GCAGC 3 cut(s) 179, 265, 563
LweI GCATC 2 cut(s) 370, 636
MboII GAAGA 1 cut(s) 602
MhlI GDGCHC 2 cut(s) 75, 161
MluCI AATT 4 cut(s) 314, 408, 672, 701
MnlI CCTC 9 cut(s) 95, 241, 241, 256, 290, 295, 297, 325, 513
MroXI GAANNNNTTC 1 cut(s) 534
MseI TTAA 6 cut(s) 174, 407, 671, 678, 699, 704
MspA1I CMGCKG 1 cut(s) 541
MspCI CTTAAG 1 cut(s) 677
MspI CCGG 2 cut(s) 168, 497
MspR9I CCNGG 2 cut(s) 168, 169
MwoI GCNNNNNNNGC 4 cut(s) 10, 102, 250, 427
NciI CCSGG 2 cut(s) 168, 169
NcoI CCATGG 2 cut(s) 745, 763
NlaIII CATG 3 cut(s) 376, 749, 767
NlaIV GGNNCC 2 cut(s) 501, 716
PdmI GAANNNNTTC 1 cut(s) 534
PinAI ACCGGT 1 cut(s) 496
PkrI GCNGC 3 cut(s) 194, 255, 553
PshBI ATTAAT 2 cut(s) 407, 671
PspN4I GGNNCC 2 cut(s) 501, 716
PspPI GGNCC 3 cut(s) 369, 652, 715
PvuII CAGCTG 1 cut(s) 541
RsaI GTAC 1 cut(s) 125
RsaNI GTAC 1 cut(s) 124
SaqAI TTAA 6 cut(s) 174, 407, 671, 678, 699, 704
SatI GCNGC 3 cut(s) 193, 254, 552
Sau96I GGNCC 3 cut(s) 369, 652, 715
ScrFI CCNGG 2 cut(s) 168, 169
SduI GDGCHC 2 cut(s) 75, 161
SfaNI GCATC 2 cut(s) 370, 636
SfcI CTRYAG 1 cut(s) 546
SinI GGWCC 3 cut(s) 369, 652, 715
SmaI CCCGGG 1 cut(s) 169
SmlI CTYRAG 2 cut(s) 257, 677
SmoI CTYRAG 2 cut(s) 257, 677
SrfI GCCCGGGC 1 cut(s) 169
Sse9I AATT 4 cut(s) 314, 408, 672, 701
SsiI CCGC 1 cut(s) 13
SspI AATATT 1 cut(s) 274
StyD4I CCNGG 2 cut(s) 166, 167
StyI CCWWGG 4 cut(s) 319, 655, 745, 763
TaaI ACNGT 2 cut(s) 547, 567
TaqI TCGA 1 cut(s) 51
TasI AATT 4 cut(s) 314, 408, 672, 701
TatI WGTACW 1 cut(s) 123
Tru1I TTAA 6 cut(s) 174, 407, 671, 678, 699, 704
Tru9I TTAA 6 cut(s) 174, 407, 671, 678, 699, 704
TscAI CASTG 1 cut(s) 670
TseI GCWGC 3 cut(s) 192, 253, 551
TspDTI ATGAA 4 cut(s) 413, 531, 539, 602
TspMI CCCGGG 1 cut(s) 167
TspRI CASTG 1 cut(s) 670
Vha464I CTTAAG 1 cut(s) 677
VneI GTGCAC 1 cut(s) 71
VpaK11BI GGWCC 3 cut(s) 369, 652, 715
VspI ATTAAT 2 cut(s) 407, 671
XapI RAATTY 1 cut(s) 314
XmaI CCCGGG 1 cut(s) 167
XmnI GAANNNNTTC 1 cut(s) 534
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.