Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0001637

Physical Location & Seq

Genomic Coordinates Forward (+)

21001871 .. 21004243

Gene Structure 2373 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1380 bp

ATGGATGTCAAGCTGTCAAACATGATCGATGTTAATGATTCTGTGAAGATTCTGGTGACCGAGGGGCCCAAGGCCATTGCTGTTTGTCCCAGAGAAGTTGAAAAGACTGTAGCCGCTTCTACTGAGGATGAACACATCAGACATAAAAATTCTACTGCAAGATTACAGCATTGCCATCGTACTAAACCCTCCAAGGTTGTTGATTCAAGAGATAGTGCTAAACCAGACAACTCCTCTTCAGAAGCTATCAAATCAGCAACTGAGCCATGCTCGGCTCCCAAGAAGAGAGGTCAGAAATCAAAATCTTTGAAGGGTTCAGAAGAAGGATATGACAATGCTCAACCCAACAATTCACTCTCTCTGAACGCTGTTAAATCTGAAATTGAGCCATCCTCGGCCCCAAAAAAGAGAGGCAGGAAGCCAAATTCTTTAATGAACCCAGCGGAAGGCTATGACCATTCTTGGATTAGTAGTGGGAGAAAAACTCAAAAACCATCTGCCAGCGGTAAGTCTGATTACAAGGTGTCTAATCCTTCACCTACAAATGATCTTCTTCATGCAAAGGCTGATGTGCCCTTGATGCTTAAAAATGTGAGGGAGCCACCTGGTTCCAAACCTAAAACTGAAAGGGATGTAGGAGCTTCTCTGTTTCTTCCGAACAACCCTCTTGGTGGATCCCAACACATAAGGCGCCGACTGAAGAAGAAAGATGTAGCAGACCATGCTGCTGATCCTAGTTCCCTTTCAGCTGTGAAGCAAGAGTTCTCAATTGCTCAAATTGAGGAGAGAACTCCTCAAGAAGAAAAGCCCAAGCTGAGAAAGAAATATAAGGGGACTGTTAACATAGGAGAAAAACTACGGGAGCAGCTTAGAGATGTTAGACTTGCTGAAAAATCAAATGAGGGCTGCATTCGTTCTTCTGTAAATGTGGTCACAGATAAGGAATCTGAAGTTCCTAGTGATCCTGATAAAGCATCACAACAACAGTCGTCTTTAGATGTTGAAACGAAGAGTACCACTGATCCATCATCTGTCCATCGTCGTATTAAGAAAAGTAGGGGGAATTATGCTTCTCAAAAGGAGAGTGCTGAAGCGTCTGGTAGCAAGATTTCTGAGTCTGCGAAAAAAATGAATGAAGATAATGAAGGAACCCCTAAAGTGGTTCTCAAGAGGAAGCGTATCATTGAAAAGGAAGAGATTCAGTCCAACAACAAAGTTCTGAAATCAGGTGTATTTGAGTTAAGTAGTGGCATTAAAATTGATAATTCATGCTTTCTTTCCCTTGATGATAAGGAAAGTATTAAACTAGTAGCAAGGCCAATGCATTTTAGTAATGTATTGCGGTCTTATAATATTTTTCCTCGTTTCTTACTTCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PEARLI-4

Protein Analysis

460

Amino Acids

50.69

Weight (kDa)

9.55

Isoelectric Point (pI)

54.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001637)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15940 AT1G80810 AT1G80810 AT1G80810 AT1G80810 AT1G80810
fragaria_vesca	FvH4_6g28720 FvH4_6g28720 FvH4_6g28720 FvH4_6g28720 FvH4_6g28720 FvH4_6g28720 FvH4_6g28720 FvH4_6g28720 FvH4_6g28720 FvH4_6g28720 FvH4_6g28720 FvH4_6g28720
malus_domestica	MD17G1222300.v1.1
prunus_persica	Prupe.3G097300_v2.0.a1 Prupe.3G097300_v2.0.a1 Prupe.3G097300_v2.0.a1 Prupe.3G097300_v2.0.a1 Prupe.3G097300_v2.0.a1
pyrus_communis	pycom05g32820 pycom06g06660 pycom09g14350 pycom10g28890 pycom16g06390 pycom17g22600 pycom17g22610 pycom17g22620
rosa_chinensis	RchiOBHm_Chr2g0133121
rosa_laevigata	RLG00000019309
rosa_multiflora	Rmu_sc0000127.1_g000007 Rmu_sc0008365.1_g000009
rosa_roxburghii	Rroxscaffold_2G00111400
rosa_rugosa	Rorug02G0309800 Rorug02G0309900 Rorug02G0310000 Rorug02G0310100 Rorug02G0310200 Rorug02G0310300 Rorug02G0310300
rosa_samantha	Rh2AG362200 Rh2BG367900 Rh2CG345500 Rh2DG385000
rosa_wichuraiana	Rw2G029460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1350
AccB1I	GGYRCC	1 cut(s)	690
AciI	CCGC	4 cut(s)	114, 443, 504, 1342
AclWI	GGATC	5 cut(s)	669, 682, 725, 956, 1016
AcsI	RAATTY	2 cut(s)	148, 424
AcuI	CTGAAG	4 cut(s)	222, 719, 969, 1110
AcyI	GRCGYC	1 cut(s)	691
AfaI	GTAC	2 cut(s)	181, 1015
AfiI	CCNNNNNNNGG	3 cut(s)	446, 671, 1159
AgsI	TTSAA	5 cut(s)	101, 207, 310, 1004, 1187
AhlI	ACTAGT	1 cut(s)	1306
AjnI	CCWGG	1 cut(s)	604
AluBI	AGCT	6 cut(s)	13, 245, 641, 749, 814, 868
AluI	AGCT	6 cut(s)	13, 245, 641, 749, 814, 868
AlwI	GGATC	5 cut(s)	669, 682, 725, 956, 1016
AlwNI	CAGNNNCTG	1 cut(s)	260
AoxI	GGCC	4 cut(s)	65, 72, 396, 1316
ApaI	GGGCCC	1 cut(s)	69
ApeKI	GCWGC	3 cut(s)	725, 865, 906
ApoI	RAATTY	2 cut(s)	148, 424
Asp700I	GAANNNNTTC	1 cut(s)	1197
AspLEI	GCGC	1 cut(s)	693
AspS9I	GGNCC	3 cut(s)	65, 66, 397
AsuHPI	GGTGA	2 cut(s)	67, 528
BaeGI	GKGCMC	2 cut(s)	69, 576
BamHI	GGATCC	1 cut(s)	674
BanI	GGYRCC	1 cut(s)	690
BanII	GRGCYC	1 cut(s)	69
BbvI	GCAGC	3 cut(s)	712, 877, 893
BccI	CCATC	5 cut(s)	183, 397, 502, 1033, 1044
BcgI	CGANNNNNNTGC	2 cut(s)	158, 192
BciT130I	CCWGG	1 cut(s)	606
BcuI	ACTAGT	1 cut(s)	1306
BfaI	CTAG	3 cut(s)	735, 957, 1307
BfmI	CTRYAG	1 cut(s)	108
BfoI	RGCGCY	1 cut(s)	694
BisI	GCNGC	4 cut(s)	114, 726, 866, 907
BlsI	GCNGC	4 cut(s)	115, 727, 867, 908
Bme1390I	CCNGG	1 cut(s)	606
BmgT120I	GGNCC	3 cut(s)	65, 66, 397
BmiI	GGNNCC	9 cut(s)	66, 67, 276, 399, 600, 610, 676, 692, 1150
BmrFI	CCNGG	1 cut(s)	606
BmsI	GCATC	2 cut(s)	570, 983
BplI	GAGNNNNNCTC	8 cut(s)	254, 286, 377, 409, 469, 501, 778, 810
BpuEI	CTTGAG	2 cut(s)	780, 1151
Bsa29I	ATCGAT	1 cut(s)	27
BsaHI	GRCGYC	1 cut(s)	691
BsaJI	CCNNGG	4 cut(s)	60, 69, 192, 393
Bsc4I	CCNNNNNNNGG	3 cut(s)	446, 671, 1159
Bse3DI	GCAATG	2 cut(s)	75, 169
BseBI	CCWGG	1 cut(s)	606
BseCI	ATCGAT	1 cut(s)	27
BseDI	CCNNGG	4 cut(s)	60, 69, 192, 393
BseGI	GGATG	4 cut(s)	10, 133, 389, 637
BseLI	CCNNNNNNNGG	3 cut(s)	446, 671, 1159
BseMI	GCAATG	2 cut(s)	75, 169
BseMII	CTCAG	4 cut(s)	114, 252, 806, 1104
BseRI	GAGGAG	3 cut(s)	223, 783, 797
BseSI	GKGCMC	2 cut(s)	69, 576
BseXI	GCAGC	3 cut(s)	712, 877, 893
BseYI	CCCAGC	1 cut(s)	439
BshFI	GGCC	4 cut(s)	67, 74, 398, 1318
BshNI	GGYRCC	1 cut(s)	690
BshVI	ATCGAT	1 cut(s)	27
BslFI	GGGAC	2 cut(s)	72, 847
BslI	CCNNNNNNNGG	3 cut(s)	446, 671, 1159
BsmFI	GGGAC	2 cut(s)	72, 847
BsmI	GAATGC	1 cut(s)	909
BsnI	GGCC	4 cut(s)	67, 74, 398, 1318
Bsp120I	GGGCCC	1 cut(s)	65
Bsp1286I	GDGCHC	2 cut(s)	69, 576
Bsp143I	GATC	6 cut(s)	24, 547, 674, 730, 961, 1021
BspACI	CCGC	4 cut(s)	114, 443, 504, 1342
BspANI	GGCC	4 cut(s)	67, 74, 398, 1318
BspCNI	CTCAG	4 cut(s)	115, 253, 807, 1105
BspDI	ATCGAT	1 cut(s)	27
BspLI	GGNNCC	9 cut(s)	66, 67, 276, 399, 600, 610, 676, 692, 1150
BspPI	GGATC	5 cut(s)	669, 682, 725, 956, 1016
BspT107I	GGYRCC	1 cut(s)	690
BsrDI	GCAATG	2 cut(s)	75, 169
BssECI	CCNNGG	4 cut(s)	60, 69, 192, 393
BssMI	GATC	6 cut(s)	24, 547, 674, 730, 961, 1021
BssNI	GRCGYC	1 cut(s)	691
BssT1I	CCWWGG	2 cut(s)	69, 192
Bst2UI	CCWGG	1 cut(s)	606
Bst4CI	ACNGT	3 cut(s)	109, 838, 987
Bst6I	CTCTTC	4 cut(s)	241, 278, 1004, 1188
BstACI	GRCGYC	1 cut(s)	691
BstAPI	GCANNNNNTGC	1 cut(s)	722
BstC8I	GCNNGC	1 cut(s)	502
BstDEI	CTNAG	5 cut(s)	123, 261, 815, 869, 1113
BstEII	GGTNACC	1 cut(s)	55
BstF5I	GGATG	4 cut(s)	10, 133, 389, 637
BstH2I	RGCGCY	1 cut(s)	694
BstHHI	GCGC	1 cut(s)	693
BstKTI	GATC	6 cut(s)	27, 550, 677, 733, 964, 1024
BstMBI	GATC	6 cut(s)	24, 547, 674, 730, 961, 1021
BstMWI	GCNNNNNNNGC	2 cut(s)	580, 722
BstNI	CCWGG	1 cut(s)	606
BstPI	GGTNACC	1 cut(s)	55
BstSCI	CCNGG	1 cut(s)	604
BstSFI	CTRYAG	1 cut(s)	108
BstSLI	GKGCMC	2 cut(s)	69, 576
BstV1I	GCAGC	3 cut(s)	712, 877, 893
BstX2I	RGATCY	1 cut(s)	674
BstYI	RGATCY	1 cut(s)	674
Bsu15I	ATCGAT	1 cut(s)	27
BsuRI	GGCC	4 cut(s)	67, 74, 398, 1318
BsuTUI	ATCGAT	1 cut(s)	27
BtsCI	GGATG	4 cut(s)	10, 133, 389, 637
BtsIMutI	CAGTG	1 cut(s)	1017
Cac8I	GCNNGC	1 cut(s)	502
CaiI	CAGNNNCTG	1 cut(s)	260
CfoI	GCGC	1 cut(s)	693
Cfr13I	GGNCC	3 cut(s)	65, 66, 397
ClaI	ATCGAT	1 cut(s)	27
CseI	GACGC	1 cut(s)	1083
CsiI	ACCWGGT	1 cut(s)	604
Csp6I	GTAC	2 cut(s)	180, 1014
CviAII	CATG	5 cut(s)	22, 267, 557, 722, 1269
CviQI	GTAC	2 cut(s)	180, 1014
DdeI	CTNAG	5 cut(s)	123, 261, 815, 869, 1113
DinI	GGCGCC	1 cut(s)	692
DpnI	GATC	6 cut(s)	26, 549, 676, 732, 963, 1023
DpnII	GATC	6 cut(s)	24, 547, 674, 730, 961, 1021
Eam1104I	CTCTTC	4 cut(s)	241, 278, 1004, 1188
EarI	CTCTTC	4 cut(s)	241, 278, 1004, 1188
Eco130I	CCWWGG	2 cut(s)	69, 192
Eco24I	GRGCYC	1 cut(s)	69
Eco57I	CTGAAG	4 cut(s)	222, 719, 969, 1110
Eco91I	GGTNACC	1 cut(s)	55
EcoO109I	RGGNCCY	1 cut(s)	65
EcoO65I	GGTNACC	1 cut(s)	55
EcoRII	CCWGG	1 cut(s)	604
EcoT14I	CCWWGG	2 cut(s)	69, 192
EcoT22I	ATGCAT	1 cut(s)	1326
EcoT38I	GRGCYC	1 cut(s)	69
EgeI	GGCGCC	1 cut(s)	692
EheI	GGCGCC	1 cut(s)	692
ErhI	CCWWGG	2 cut(s)	69, 192
FaeI	CATG	5 cut(s)	25, 270, 560, 725, 1272
FaqI	GGGAC	2 cut(s)	72, 847
FatI	CATG	5 cut(s)	21, 266, 556, 721, 1268
Fnu4HI	GCNGC	4 cut(s)	114, 726, 866, 907
FokI	GGATG	4 cut(s)	17, 140, 376, 644
FriOI	GRGCYC	1 cut(s)	69
Fsp4HI	GCNGC	4 cut(s)	114, 726, 866, 907
FspBI	CTAG	3 cut(s)	735, 957, 1307
GlaI	GCGC	1 cut(s)	692
GluI	GCNGC	4 cut(s)	114, 726, 866, 907
GsaI	CCCAGC	1 cut(s)	443
HaeII	RGCGCY	1 cut(s)	694
HaeIII	GGCC	4 cut(s)	67, 74, 398, 1318
HgaI	GACGC	1 cut(s)	1083
HhaI	GCGC	1 cut(s)	693
Hin1I	GRCGYC	1 cut(s)	691
Hin1II	CATG	5 cut(s)	25, 270, 560, 725, 1272
Hin6I	GCGC	1 cut(s)	691
HinP1I	GCGC	1 cut(s)	691
HincII	GTYRAC	1 cut(s)	841
HindII	GTYRAC	1 cut(s)	841
HinfI	GANTC	6 cut(s)	38, 49, 203, 944, 1115, 1198
HpaI	GTTAAC	1 cut(s)	841
HphI	GGTGA	2 cut(s)	67, 528
Hpy166II	GTNNAC	1 cut(s)	841
Hpy188III	TCNNGA	4 cut(s)	207, 797, 965, 1168
Hpy8I	GTNNAC	1 cut(s)	841
Hpy99I	CGWCG	1 cut(s)	1044
HpyAV	CCTTC	5 cut(s)	304, 317, 440, 543, 1139
HpyCH4III	ACNGT	3 cut(s)	109, 838, 987
HpyCH4V	TGCA	4 cut(s)	158, 560, 909, 1324
HpyF10VI	GCNNNNNNNGC	2 cut(s)	580, 722
HpyF3I	CTNAG	5 cut(s)	123, 261, 815, 869, 1113
Hsp92I	GRCGYC	1 cut(s)	691
Hsp92II	CATG	5 cut(s)	25, 270, 560, 725, 1272
HspAI	GCGC	1 cut(s)	691
KasI	GGCGCC	1 cut(s)	690
KspAI	GTTAAC	1 cut(s)	841
Kzo9I	GATC	6 cut(s)	24, 547, 674, 730, 961, 1021
LmnI	GCTCC	4 cut(s)	280, 598, 638, 862
Lsp1109I	GCAGC	3 cut(s)	712, 877, 893
LweI	GCATC	2 cut(s)	570, 983
MabI	ACCWGGT	1 cut(s)	604
MaeI	CTAG	3 cut(s)	735, 957, 1307
MaeIII	GTNAC	2 cut(s)	55, 931
MalI	GATC	6 cut(s)	26, 549, 676, 732, 963, 1023
MboI	GATC	6 cut(s)	24, 547, 674, 730, 961, 1021
MfeI	CAATTG	1 cut(s)	768
MflI	RGATCY	1 cut(s)	674
MhlI	GDGCHC	2 cut(s)	69, 576
MluCI	AATT	9 cut(s)	148, 349, 381, 424, 768, 777, 1063, 1257, 1264
Mly113I	GGCGCC	1 cut(s)	691
MlyI	GAGTC	1 cut(s)	1124
MmeI	TCCRAC	1 cut(s)	1230
Mph1103I	ATGCAT	1 cut(s)	1326
MroXI	GAANNNNTTC	1 cut(s)	1197
MspA1I	CMGCKG	3 cut(s)	443, 504, 749
MspR9I	CCNGG	1 cut(s)	606
MunI	CAATTG	1 cut(s)	768
Mva1269I	GAATGC	1 cut(s)	909
MvaI	CCWGG	1 cut(s)	606
MwoI	GCNNNNNNNGC	2 cut(s)	580, 722
NarI	GGCGCC	1 cut(s)	691
NdeII	GATC	6 cut(s)	24, 547, 674, 730, 961, 1021
NlaIII	CATG	5 cut(s)	25, 270, 560, 725, 1272
NlaIV	GGNNCC	9 cut(s)	66, 67, 276, 399, 600, 610, 676, 692, 1150
NmeAIII	GCCGAG	2 cut(s)	251, 374
NmuCI	GTSAC	2 cut(s)	55, 931
NsiI	ATGCAT	1 cut(s)	1326
PctI	GAATGC	1 cut(s)	909
PdmI	GAANNNNTTC	1 cut(s)	1197
PfeI	GAWTC	5 cut(s)	38, 49, 203, 944, 1198
PkrI	GCNGC	4 cut(s)	115, 727, 867, 908
PleI	GAGTC	1 cut(s)	1123
PluTI	GGCGCC	1 cut(s)	694
PpsI	GAGTC	1 cut(s)	1123
PsiI	TTATAA	1 cut(s)	1350
Psp6I	CCWGG	1 cut(s)	604
PspEI	GGTNACC	1 cut(s)	55
PspFI	CCCAGC	1 cut(s)	439
PspGI	CCWGG	1 cut(s)	604
PspN4I	GGNNCC	9 cut(s)	66, 67, 276, 399, 600, 610, 676, 692, 1150
PspOMI	GGGCCC	1 cut(s)	65
PspPI	GGNCC	3 cut(s)	65, 66, 397
PstNI	CAGNNNCTG	1 cut(s)	260
PsuI	RGATCY	1 cut(s)	674
PvuII	CAGCTG	1 cut(s)	749
RsaI	GTAC	2 cut(s)	181, 1015
RsaNI	GTAC	2 cut(s)	180, 1014
SatI	GCNGC	4 cut(s)	114, 726, 866, 907
Sau3AI	GATC	6 cut(s)	24, 547, 674, 730, 961, 1021
Sau96I	GGNCC	3 cut(s)	65, 66, 397
SchI	GAGTC	1 cut(s)	1124
ScrFI	CCNGG	1 cut(s)	606
SduI	GDGCHC	2 cut(s)	69, 576
SexAI	ACCWGGT	1 cut(s)	604
SfaNI	GCATC	2 cut(s)	570, 983
SfcI	CTRYAG	1 cut(s)	108
SfoI	GGCGCC	1 cut(s)	692
SmlI	CTYRAG	2 cut(s)	795, 1166
SmoI	CTYRAG	2 cut(s)	795, 1166
SpeI	ACTAGT	1 cut(s)	1306
Sse9I	AATT	9 cut(s)	148, 349, 381, 424, 768, 777, 1063, 1257, 1264
SsiI	CCGC	4 cut(s)	114, 443, 504, 1342
SspDI	GGCGCC	1 cut(s)	690
SspI	AATATT	1 cut(s)	1354
SspMI	CTAG	3 cut(s)	735, 957, 1307
StyD4I	CCNGG	1 cut(s)	604
StyI	CCWWGG	2 cut(s)	69, 192
TaaI	ACNGT	3 cut(s)	109, 838, 987
TaqI	TCGA	1 cut(s)	27
TaqII	GACCGA	1 cut(s)	74
TasI	AATT	9 cut(s)	148, 349, 381, 424, 768, 777, 1063, 1257, 1264
TauI	GCSGC	1 cut(s)	116
TfiI	GAWTC	5 cut(s)	38, 49, 203, 944, 1198
TscAI	CASTG	1 cut(s)	1024
TseFI	GTSAC	2 cut(s)	55, 931
TseI	GCWGC	3 cut(s)	725, 865, 906
Tsp45I	GTSAC	2 cut(s)	55, 931
TspDTI	ATGAA	7 cut(s)	144, 449, 545, 1145, 1149, 1158, 1257
TspRI	CASTG	1 cut(s)	1024
XapI	RAATTY	2 cut(s)	148, 424
XmnI	GAANNNNTTC	1 cut(s)	1197
XspI	CTAG	3 cut(s)	735, 957, 1307
Zsp2I	ATGCAT	1 cut(s)	1326

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.