pycom17g22620

Sister chromatid cohesion protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0001637
Physical Location & Seq
Forward (+)
21005114 .. 21008189
3076 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1035 bp
ATGCCTGATCTCGGTGAACGGTTGGTTGACAGAAGAATAAAGGTTTGGTGGCCACAGGACAAAAAGTTTTATGAAGGTGTTGTTTCTTCTTACGACCCTGCCAAAAAGAAACACTTGGTGTTGTATGCTGATGGGGATGAAGAAAACCTGAACCTCAAAAAGCAGCGCTGGAAACTGATTGGAGATGATTTGCCAGACGTCGAATTGGAGAATCTGATAAAACCTTTTGCTGCTTCTGATACACTACCACAAAAGAGAAAACAGAAACCAAAATCAGGGCCATCAAAACAAACAAACACCGGTCTGTCCTCAAAAAGGATATCTAGACGTGGAGTCTCAGCTGGAAGCAAATCTGCGGACTGTTTTGTACTAGGTGGGCATAAAGTTACTGAAGAATGTGACGGTGATCAAACCAAGGAAAATGACGGATTGAAGGATGATGGCCAAATATCTGCTGGTAAATTGGAGGCGAATATGAAGACTGGTATTGGCTCTGCAACAGTAGGCGAGCATAAAGTTATTGATGAACGTGAGGATGATCAAGTCAAGGAAAATGACGGAGTAAAGGATAATGGCCAAATATCTGTTGGCAAATTGGAGGCCAATATGAAAACTGGTATTGACTCTGCCACAGTAGGTGAGCATAAGGTTATTGATGAACGTGAAGGGGATCAAGCCATGGAAAATGATGGATTGAAGGATAATGGCCAAATGTCTGCTGGTAAATCGAAGGCAGATATGAAGGCTGGTATTGACTCTGCTGCAGTAGGTGACCATAAAGTTATTGATGAACGAGAGGGGGGTCAAGCCAAGGAAAATGCCGGATTGAAGGATAATGGCCAAATGTATGCTGGTGAATTGGAGGCTGGTATGAAGACTGGTATTGACTCTGCACAGCTCACACCGGAGACTATGACCTTATCGAAGGGAGAGAGTCCAAAAGTCGATATTGAACCTTCTGGTAGGGAATGCTTCAAAGAACTGATGGAATTGGGCAAGGGTGCAGAGAACGCAAGATCACTTAACGTTAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PEARLI-4

Protein Analysis

345

Amino Acids

37.27

Weight (kDa)

5.21

Isoelectric Point (pI)

31.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PTM_DIR17_Tudor PF21743 21 - 53 7.2e-06 PTM/DIR17-like, Tudor domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 201
AciI CCGC 1 cut(s) 356
AclI AACGTT 1 cut(s) 1026
AclWI GGATC 1 cut(s) 678
AcoI YGGCCR 5 cut(s) 50, 442, 574, 706, 838
AcuI CTGAAG 1 cut(s) 411
AcyI GRCGYC 1 cut(s) 198
AdeI CACNNNGTG 1 cut(s) 118
AfaI GTAC 1 cut(s) 369
AfeI AGCGCT 1 cut(s) 167
AfiI CCNNNNNNNGG 3 cut(s) 11, 275, 315
AgeI ACCGGT 1 cut(s) 299
AgsI TTSAA 5 cut(s) 433, 697, 829, 953, 976
AhdI GACNNNNNGTC 1 cut(s) 332
AjiI CACGTC 1 cut(s) 329
AjuI GAANNNNNNNTTGG 2 cut(s) 28, 60
AluBI AGCT 2 cut(s) 341, 898
AluI AGCT 2 cut(s) 341, 898
Alw26I GTCTC 2 cut(s) 340, 902
AlwI GGATC 1 cut(s) 678
Aor51HI AGCGCT 1 cut(s) 167
AoxI GGCC 7 cut(s) 50, 278, 442, 574, 600, 706, 838
ApeKI GCWGC 3 cut(s) 163, 230, 761
AsiGI ACCGGT 1 cut(s) 299
AspLEI GCGC 1 cut(s) 168
AspS9I GGNCC 1 cut(s) 278
AsuHPI GGTGA 5 cut(s) 26, 416, 650, 782, 866
BalI TGGCCA 5 cut(s) 52, 444, 576, 708, 840
BbsI GAAGAC 2 cut(s) 485, 881
BbvI GCAGC 3 cut(s) 175, 217, 748
BccI CCATC 5 cut(s) 125, 289, 434, 683, 979
BclI TGATCA 2 cut(s) 406, 538
BcoDI GTCTC 2 cut(s) 340, 902
BfaI CTAG 2 cut(s) 324, 371
BfmI CTRYAG 1 cut(s) 762
BfoI RGCGCY 1 cut(s) 169
BisI GCNGC 3 cut(s) 164, 231, 762
BlsI GCNGC 3 cut(s) 165, 232, 763
BmeRI GACNNNNNGTC 1 cut(s) 332
BmgBI CACGTC 1 cut(s) 329
BmgT120I GGNCC 1 cut(s) 278
BpiI GAAGAC 2 cut(s) 485, 881
BsaHI GRCGYC 1 cut(s) 198
BsaJI CCNNGG 3 cut(s) 414, 678, 810
BsaWI WCCGGW 2 cut(s) 299, 904
Bsc4I CCNNNNNNNGG 3 cut(s) 11, 275, 315
Bse118I RCCGGY 1 cut(s) 299
Bse1I ACTGG 3 cut(s) 487, 619, 883
BseDI CCNNGG 3 cut(s) 414, 678, 810
BseGI GGATG 3 cut(s) 142, 442, 541
BseLI CCNNNNNNNGG 3 cut(s) 11, 275, 315
BseMII CTCAG 1 cut(s) 351
BseNI ACTGG 3 cut(s) 487, 619, 883
BseXI GCAGC 3 cut(s) 175, 217, 748
BsgI GTGCAG 2 cut(s) 876, 1023
BshFI GGCC 7 cut(s) 52, 280, 444, 576, 602, 708, 840
BshTI ACCGGT 1 cut(s) 299
BsiSI CCGG 3 cut(s) 300, 822, 905
BslI CCNNNNNNNGG 3 cut(s) 11, 275, 315
BsmAI GTCTC 2 cut(s) 340, 902
BsmI GAATGC 1 cut(s) 974
BsnI GGCC 7 cut(s) 52, 280, 444, 576, 602, 708, 840
Bsp143I GATC 5 cut(s) 7, 406, 538, 670, 1016
Bsp19I CCATGG 1 cut(s) 678
BspACI CCGC 1 cut(s) 356
BspANI GGCC 7 cut(s) 52, 280, 444, 576, 602, 708, 840
BspCNI CTCAG 1 cut(s) 350
BspMAI CTGCAG 1 cut(s) 766
BspPI GGATC 1 cut(s) 678
BsrFI RCCGGY 1 cut(s) 299
BsrI ACTGG 3 cut(s) 487, 619, 883
BssAI RCCGGY 1 cut(s) 299
BssECI CCNNGG 3 cut(s) 414, 678, 810
BssMI GATC 5 cut(s) 7, 406, 538, 670, 1016
BssNI GRCGYC 1 cut(s) 198
BssT1I CCWWGG 3 cut(s) 414, 678, 810
Bst4CI ACNGT 5 cut(s) 21, 362, 404, 502, 634
BstACI GRCGYC 1 cut(s) 198
BstC8I GCNNGC 1 cut(s) 509
BstDEI CTNAG 1 cut(s) 337
BstDSI CCRYGG 1 cut(s) 678
BstEII GGTNACC 1 cut(s) 770
BstENI CCTNNNNNAGG 1 cut(s) 313
BstF5I GGATG 3 cut(s) 142, 442, 541
BstH2I RGCGCY 1 cut(s) 169
BstHHI GCGC 1 cut(s) 168
BstKTI GATC 5 cut(s) 10, 409, 541, 673, 1019
BstMAI GTCTC 2 cut(s) 340, 902
BstMBI GATC 5 cut(s) 7, 406, 538, 670, 1016
BstMWI GCNNNNNNNGC 1 cut(s) 1010
BstPI GGTNACC 1 cut(s) 770
BstSFI CTRYAG 1 cut(s) 762
BstV1I GCAGC 3 cut(s) 175, 217, 748
BstV2I GAAGAC 2 cut(s) 485, 881
BsuRI GGCC 7 cut(s) 52, 280, 444, 576, 602, 708, 840
BtgI CCRYGG 1 cut(s) 678
BtrI CACGTC 1 cut(s) 329
BtsCI GGATG 3 cut(s) 142, 442, 541
Cac8I GCNNGC 1 cut(s) 509
CfoI GCGC 1 cut(s) 168
Cfr10I RCCGGY 1 cut(s) 299
Cfr13I GGNCC 1 cut(s) 278
Csp6I GTAC 1 cut(s) 368
CspAI ACCGGT 1 cut(s) 299
CviAII CATG 1 cut(s) 679
CviQI GTAC 1 cut(s) 368
DdeI CTNAG 1 cut(s) 337
DpnI GATC 5 cut(s) 9, 408, 540, 672, 1018
DpnII GATC 5 cut(s) 7, 406, 538, 670, 1016
DraIII CACNNNGTG 1 cut(s) 118
DriI GACNNNNNGTC 1 cut(s) 332
EaeI YGGCCR 5 cut(s) 50, 442, 574, 706, 838
Eam1105I GACNNNNNGTC 1 cut(s) 332
Eco130I CCWWGG 3 cut(s) 414, 678, 810
Eco32I GATATC 1 cut(s) 321
Eco47III AGCGCT 1 cut(s) 167
Eco57I CTGAAG 1 cut(s) 411
Eco91I GGTNACC 1 cut(s) 770
EcoNI CCTNNNNNAGG 1 cut(s) 313
EcoO65I GGTNACC 1 cut(s) 770
EcoRV GATATC 1 cut(s) 321
EcoT14I CCWWGG 3 cut(s) 414, 678, 810
ErhI CCWWGG 3 cut(s) 414, 678, 810
FaeI CATG 1 cut(s) 682
FalI AAGNNNNNCTT 2 cut(s) 98, 130
FatI CATG 1 cut(s) 678
FbaI TGATCA 2 cut(s) 406, 538
Fnu4HI GCNGC 3 cut(s) 164, 231, 762
FokI GGATG 3 cut(s) 149, 449, 548
Fsp4HI GCNGC 3 cut(s) 164, 231, 762
FspBI CTAG 2 cut(s) 324, 371
GlaI GCGC 1 cut(s) 167
GluI GCNGC 3 cut(s) 164, 231, 762
HaeII RGCGCY 1 cut(s) 169
HaeIII GGCC 7 cut(s) 52, 280, 444, 576, 602, 708, 840
HapII CCGG 3 cut(s) 300, 822, 905
HhaI GCGC 1 cut(s) 168
Hin1I GRCGYC 1 cut(s) 198
Hin1II CATG 1 cut(s) 682
Hin6I GCGC 1 cut(s) 166
HinP1I GCGC 1 cut(s) 166
HincII GTYRAC 1 cut(s) 28
HindII GTYRAC 1 cut(s) 28
HinfI GANTC 6 cut(s) 211, 333, 623, 755, 887, 934
HpaII CCGG 3 cut(s) 300, 822, 905
HphI GGTGA 5 cut(s) 26, 416, 650, 782, 866
Hpy166II GTNNAC 2 cut(s) 17, 28
Hpy188I TCNGA 2 cut(s) 216, 238
Hpy188III TCNNGA 1 cut(s) 324
Hpy8I GTNNAC 2 cut(s) 17, 28
Hpy99I CGWCG 1 cut(s) 203
HpyAV CCTTC 9 cut(s) 68, 427, 659, 691, 724, 736, 823, 919, 966
HpyCH4III ACNGT 5 cut(s) 21, 362, 404, 502, 634
HpyCH4IV ACGT 5 cut(s) 198, 328, 529, 661, 1026
HpyCH4V TGCA 4 cut(s) 497, 764, 893, 1004
HpyF10VI GCNNNNNNNGC 1 cut(s) 1010
HpyF3I CTNAG 1 cut(s) 337
HpySE526I ACGT 5 cut(s) 198, 328, 529, 661, 1026
Hsp92I GRCGYC 1 cut(s) 198
Hsp92II CATG 1 cut(s) 682
HspAI GCGC 1 cut(s) 166
Ksp22I TGATCA 2 cut(s) 406, 538
Kzo9I GATC 5 cut(s) 7, 406, 538, 670, 1016
Lsp1109I GCAGC 3 cut(s) 175, 217, 748
MaeI CTAG 2 cut(s) 324, 371
MaeII ACGT 5 cut(s) 198, 328, 529, 661, 1026
MaeIII GTNAC 3 cut(s) 385, 398, 770
MalI GATC 5 cut(s) 9, 408, 540, 672, 1018
MboI GATC 5 cut(s) 7, 406, 538, 670, 1016
MboII GAAGA 6 cut(s) 45, 78, 152, 404, 490, 886
MlsI TGGCCA 5 cut(s) 52, 444, 576, 708, 840
MluCI AATT 5 cut(s) 203, 461, 593, 857, 989
MluNI TGGCCA 5 cut(s) 52, 444, 576, 708, 840
MlyI GAGTC 5 cut(s) 342, 617, 749, 881, 943
MnlI CCTC 7 cut(s) 164, 319, 460, 526, 592, 790, 856
Mox20I TGGCCA 5 cut(s) 52, 444, 576, 708, 840
MscI TGGCCA 5 cut(s) 52, 444, 576, 708, 840
MseI TTAA 1 cut(s) 1023
Msp20I TGGCCA 5 cut(s) 52, 444, 576, 708, 840
MspA1I CMGCKG 1 cut(s) 341
MspI CCGG 3 cut(s) 300, 822, 905
Mva1269I GAATGC 1 cut(s) 974
MwoI GCNNNNNNNGC 1 cut(s) 1010
NcoI CCATGG 1 cut(s) 678
NdeII GATC 5 cut(s) 7, 406, 538, 670, 1016
NlaIII CATG 1 cut(s) 682
NmuCI GTSAC 2 cut(s) 398, 770
PctI GAATGC 1 cut(s) 974
PfeI GAWTC 1 cut(s) 211
PinAI ACCGGT 1 cut(s) 299
PkrI GCNGC 3 cut(s) 165, 232, 763
PleI GAGTC 5 cut(s) 341, 617, 749, 881, 942
PpsI GAGTC 5 cut(s) 341, 617, 749, 881, 942
Psp1406I AACGTT 1 cut(s) 1026
PspEI GGTNACC 1 cut(s) 770
PspPI GGNCC 1 cut(s) 278
PstI CTGCAG 1 cut(s) 766
PvuII CAGCTG 1 cut(s) 341
RsaI GTAC 1 cut(s) 369
RsaNI GTAC 1 cut(s) 368
SaqAI TTAA 1 cut(s) 1023
SatI GCNGC 3 cut(s) 164, 231, 762
Sau3AI GATC 5 cut(s) 7, 406, 538, 670, 1016
Sau96I GGNCC 1 cut(s) 278
SchI GAGTC 5 cut(s) 342, 617, 749, 881, 943
SfcI CTRYAG 1 cut(s) 762
Sse9I AATT 5 cut(s) 203, 461, 593, 857, 989
SsiI CCGC 1 cut(s) 356
SspMI CTAG 2 cut(s) 324, 371
StyI CCWWGG 3 cut(s) 414, 678, 810
TaaI ACNGT 5 cut(s) 21, 362, 404, 502, 634
TaiI ACGT 5 cut(s) 201, 331, 532, 664, 1029
TaqI TCGA 4 cut(s) 201, 728, 923, 945
TasI AATT 5 cut(s) 203, 461, 593, 857, 989
TatI WGTACW 1 cut(s) 367
TfiI GAWTC 1 cut(s) 211
Tru1I TTAA 1 cut(s) 1023
Tru9I TTAA 1 cut(s) 1023
TseFI GTSAC 2 cut(s) 398, 770
TseI GCWGC 3 cut(s) 163, 230, 761
Tsp45I GTSAC 2 cut(s) 398, 770
TspDTI ATGAA 9 cut(s) 87, 153, 491, 540, 623, 672, 755, 804, 887
TspGWI ACGGA 2 cut(s) 441, 573
XagI CCTNNNNNAGG 1 cut(s) 313
XbaI TCTAGA 1 cut(s) 323
XcmI CCANNNNNNNNNTGG 4 cut(s) 452, 584, 716, 848
XspI CTAG 2 cut(s) 324, 371
ZraI GACGTC 1 cut(s) 199
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.