pycom17g27780

NPR1 interacting

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0003379
Physical Location & Seq
Forward (+)
25877936 .. 25878319
384 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 384 bp
ATGATTCATCACATGGAGACCTGCAAGGAGAGCAACAAAAGGAAGATGATCAATAGCAACGTTGATGATGATGAAGAAGAGAAAATTGAGTTGTTCTTTGCTCTTATCAACAACATCCGGGTAGCTCGTGATCGGTTGATGAATGGTTCGAATGTGTCGAAAGGGAGCGAAATTCATGAGAGCGTATCAACCAAGAAGAATAAAAGGAAAGTGGTAGAAGGCGATGAGGAAGAGAAGACCACAGCTGGAGTTTGGAAGCCAACTTTTCAGCCTGAAGATTTAACGGAAGTGGCGACTCAGTCCAAAATCCCTCATGTCATCTCCGGGGGTAGTAAGAGAGAACATTGTAAAAAAGGTGATTTAGATCTTAGGCTTTCTCTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NPR1_interact

Protein Analysis

128

Amino Acids

14.45

Weight (kDa)

6.52

Isoelectric Point (pI)

53.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NPR1_interact PF15699 22 - 111 1.1e-16 NPR1 interacting
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 29
AclI AACGTT 1 cut(s) 60
AcsI RAATTY 1 cut(s) 171
AcuI CTGAAG 1 cut(s) 294
AluBI AGCT 2 cut(s) 125, 245
AluI AGCT 2 cut(s) 125, 245
Alw26I GTCTC 1 cut(s) 11
ApoI RAATTY 1 cut(s) 171
AsuC2I CCSGG 2 cut(s) 119, 325
AsuHPI GGTGA 1 cut(s) 368
AsuII TTCGAA 1 cut(s) 149
BauI CACGAG 1 cut(s) 126
BbsI GAAGAC 1 cut(s) 242
BclI TGATCA 1 cut(s) 48
BcnI CCSGG 2 cut(s) 119, 325
BcoDI GTCTC 1 cut(s) 11
BfuAI ACCTGC 1 cut(s) 29
BglII AGATCT 1 cut(s) 364
Bme1390I CCNGG 2 cut(s) 119, 325
BmrFI CCNGG 2 cut(s) 119, 325
BpiI GAAGAC 1 cut(s) 242
BpmI CTGGAG 1 cut(s) 267
Bpu14I TTCGAA 1 cut(s) 149
BpuMI CCSGG 2 cut(s) 119, 325
BsaBI GATNNNNATC 1 cut(s) 363
BsaI GGTCTC 1 cut(s) 11
BsaJI CCNNGG 1 cut(s) 324
Bse8I GATNNNNATC 1 cut(s) 363
BseDI CCNNGG 1 cut(s) 324
BseGI GGATG 1 cut(s) 114
BseJI GATNNNNATC 1 cut(s) 363
BseMII CTCAG 1 cut(s) 311
BsiSI CCGG 2 cut(s) 118, 324
BsmAI GTCTC 1 cut(s) 11
Bso31I GGTCTC 1 cut(s) 11
Bsp119I TTCGAA 1 cut(s) 149
Bsp143I GATC 3 cut(s) 48, 130, 364
BspCNI CTCAG 1 cut(s) 310
BspHI TCATGA 1 cut(s) 175
BspMI ACCTGC 1 cut(s) 29
BspT104I TTCGAA 1 cut(s) 149
BspTNI GGTCTC 1 cut(s) 11
BssECI CCNNGG 1 cut(s) 324
BssMI GATC 3 cut(s) 48, 130, 364
BssSI CACGAG 1 cut(s) 126
Bst2BI CACGAG 1 cut(s) 126
Bst6I CTCTTC 2 cut(s) 72, 225
BstBI TTCGAA 1 cut(s) 149
BstDEI CTNAG 2 cut(s) 297, 368
BstF5I GGATG 1 cut(s) 114
BstKTI GATC 3 cut(s) 51, 133, 367
BstMAI GTCTC 1 cut(s) 11
BstMBI GATC 3 cut(s) 48, 130, 364
BstMWI GCNNNNNNNGC 1 cut(s) 30
BstSCI CCNGG 2 cut(s) 117, 323
BstV2I GAAGAC 1 cut(s) 242
BstX2I RGATCY 1 cut(s) 364
BstYI RGATCY 1 cut(s) 364
BtgZI GCGATG 1 cut(s) 237
BtsCI GGATG 1 cut(s) 114
BveI ACCTGC 1 cut(s) 29
CciI TCATGA 1 cut(s) 175
CviAII CATG 3 cut(s) 13, 176, 314
CviJI RGCY 5 cut(s) 125, 245, 259, 271, 373
CviKI_1 RGCY 5 cut(s) 125, 245, 259, 271, 373
DdeI CTNAG 2 cut(s) 297, 368
DpnI GATC 3 cut(s) 50, 132, 366
DpnII GATC 3 cut(s) 48, 130, 364
Eam1104I CTCTTC 2 cut(s) 72, 225
EarI CTCTTC 2 cut(s) 72, 225
Eco31I GGTCTC 1 cut(s) 11
Eco57I CTGAAG 1 cut(s) 294
FaeI CATG 3 cut(s) 16, 179, 317
FaiI YATR 3 cut(s) 14, 177, 315
FatI CATG 3 cut(s) 12, 175, 313
FbaI TGATCA 1 cut(s) 48
FokI GGATG 1 cut(s) 101
GsuI CTGGAG 1 cut(s) 267
HapII CCGG 2 cut(s) 118, 324
Hin1II CATG 3 cut(s) 16, 179, 317
HinfI GANTC 2 cut(s) 4, 295
HpaII CCGG 2 cut(s) 118, 324
HphI GGTGA 1 cut(s) 368
Hpy188III TCNNGA 2 cut(s) 128, 176
HpyAV CCTTC 1 cut(s) 212
HpyCH4IV ACGT 1 cut(s) 60
HpyCH4V TGCA 1 cut(s) 24
HpyF10VI GCNNNNNNNGC 1 cut(s) 30
HpyF3I CTNAG 2 cut(s) 297, 368
HpySE526I ACGT 1 cut(s) 60
Hsp92II CATG 3 cut(s) 16, 179, 317
Ksp22I TGATCA 1 cut(s) 48
Kzo9I GATC 3 cut(s) 48, 130, 364
LmnI GCTCC 1 cut(s) 165
LpnPI CCDG 5 cut(s) 34, 131, 231, 285, 337
MaeII ACGT 1 cut(s) 60
MalI GATC 3 cut(s) 50, 132, 366
MboI GATC 3 cut(s) 48, 130, 364
MboII GAAGA 7 cut(s) 55, 86, 89, 208, 242, 247, 287
MflI RGATCY 1 cut(s) 364
MluCI AATT 2 cut(s) 84, 171
MlyI GAGTC 1 cut(s) 289
MnlI CCTC 2 cut(s) 220, 321
MseI TTAA 1 cut(s) 281
MspA1I CMGCKG 1 cut(s) 245
MspI CCGG 2 cut(s) 118, 324
MspR9I CCNGG 2 cut(s) 119, 325
MwoI GCNNNNNNNGC 1 cut(s) 30
NciI CCSGG 2 cut(s) 119, 325
NdeII GATC 3 cut(s) 48, 130, 364
NlaIII CATG 3 cut(s) 16, 179, 317
NspV TTCGAA 1 cut(s) 149
PagI TCATGA 1 cut(s) 175
PcsI WCGNNNNNNNCGW 2 cut(s) 155, 290
PfeI GAWTC 1 cut(s) 4
PflFI GACNNNGTC 1 cut(s) 298
PleI GAGTC 1 cut(s) 289
PpsI GAGTC 1 cut(s) 289
Psp1406I AACGTT 1 cut(s) 60
PsuI RGATCY 1 cut(s) 364
PsyI GACNNNGTC 1 cut(s) 298
PvuII CAGCTG 1 cut(s) 245
SaqAI TTAA 1 cut(s) 281
Sau3AI GATC 3 cut(s) 48, 130, 364
SchI GAGTC 1 cut(s) 289
ScrFI CCNGG 2 cut(s) 119, 325
SetI ASST 5 cut(s) 23, 63, 127, 247, 358
SfuI TTCGAA 1 cut(s) 149
Sse9I AATT 2 cut(s) 84, 171
StyD4I CCNGG 2 cut(s) 117, 323
TaiI ACGT 1 cut(s) 63
TaqI TCGA 2 cut(s) 149, 158
TasI AATT 2 cut(s) 84, 171
TfiI GAWTC 1 cut(s) 4
Tru1I TTAA 1 cut(s) 281
Tru9I TTAA 1 cut(s) 281
TspDTI ATGAA 3 cut(s) 87, 155, 164
TspGWI ACGGA 1 cut(s) 299
Tth111I GACNNNGTC 1 cut(s) 298
XapI RAATTY 1 cut(s) 171
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.