RchiOBHm_Chr6g0256281

Belongs to the UDP-glycosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0006957
Physical Location & Seq
Reverse (-)
11539536 .. 11540093
558 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 495 bp
ATGGGTGTAATAATATATCAGAAAATTCATTCTCTGAATCTTGTGATATCTAACTGTGGGCAGGAGTTCATTTGGGTTGTGAAGAAAGAAAAGAAAGAAAAAGAAGAGTGGTTGCCAAAAAGGTTTGAGCAGAGAACGGAAGGTAAGGGAGTGATTATAAGAGGTTGGTCTCCCCAAGTAGCGATTCTTGAGCGCGCAGCTATTGGAGGGTTTGTGACTCATTGTGGATGGAACTCTATCTTTGAAGCAGTGTCTGCTGGGATACTTGGGATTGGGGTTGTTGTTGGTGCTCAAAAGTGGTCGACATTTGAGGAGGATAGTGTGAAGAGAGAAGCTAGTGTGAAAAGGAAAGCCATAGAAAAGGCTTTGACTAGAATCATGGTGGATGGTGAAGCTGAAAAAATCAGAAGCAAAGCCAAAGCGCATGGTGAGATGGCAACAAGGGCTGTTCAAGAAGGTGGCTCATCTTTTCTAGGATATAAATGCTGTAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00906 ko01100 ko01110 map00906 map01100 map01110
Pfam Domains
Protein Families
UDPGT

Protein Analysis

164

Amino Acids

18.21

Weight (kDa)

9.32

Isoelectric Point (pI)

36.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 14 - 91 5e-09 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 158
AccI GTMKAC 1 cut(s) 302
AccII CGCG 1 cut(s) 195
AcsI RAATTY 1 cut(s) 24
AgsI TTSAA 2 cut(s) 245, 452
AjuI GAANNNNNNNTTGG 2 cut(s) 168, 200
AluBI AGCT 3 cut(s) 200, 335, 395
AluI AGCT 3 cut(s) 200, 335, 395
Alw21I GWGCWC 1 cut(s) 292
Alw26I GTCTC 1 cut(s) 174
AlwNI CAGNNNCTG 1 cut(s) 254
ApeKI GCWGC 1 cut(s) 197
ApoI RAATTY 1 cut(s) 24
AspLEI GCGC 3 cut(s) 195, 197, 424
AsuHPI GGTGA 2 cut(s) 401, 440
Bbv12I GWGCWC 1 cut(s) 292
BbvI GCAGC 1 cut(s) 209
BccI CCATC 3 cut(s) 222, 380, 427
BciVI GTATCC 1 cut(s) 255
BcoDI GTCTC 1 cut(s) 174
BfaI CTAG 3 cut(s) 336, 372, 473
BfuI GTATCC 1 cut(s) 255
BisI GCNGC 1 cut(s) 198
BlsI GCNGC 1 cut(s) 199
BpuEI CTTGAG 1 cut(s) 209
BsaI GGTCTC 1 cut(s) 174
BsaXI ACNNNNNCTCC 2 cut(s) 198, 228
BseGI GGATG 2 cut(s) 233, 391
BsePI GCGCGC 1 cut(s) 193
BseRI GAGGAG 1 cut(s) 326
BseXI GCAGC 1 cut(s) 209
BseYI CCCAGC 1 cut(s) 257
Bsh1236I CGCG 1 cut(s) 195
BsiHKAI GWGCWC 1 cut(s) 292
BsmAI GTCTC 1 cut(s) 174
Bso31I GGTCTC 1 cut(s) 174
Bsp1286I GDGCHC 1 cut(s) 292
BspFNI CGCG 1 cut(s) 195
BspTNI GGTCTC 1 cut(s) 174
BssHII GCGCGC 1 cut(s) 193
Bst4CI ACNGT 1 cut(s) 56
Bst6I CTCTTC 2 cut(s) 99, 320
BstAPI GCANNNNNTGC 1 cut(s) 254
BstC8I GCNNGC 1 cut(s) 195
BstF5I GGATG 2 cut(s) 233, 391
BstFNI CGCG 1 cut(s) 195
BstHHI GCGC 3 cut(s) 195, 197, 424
BstMAI GTCTC 1 cut(s) 174
BstMWI GCNNNNNNNGC 2 cut(s) 254, 443
BstUI CGCG 1 cut(s) 195
BstV1I GCAGC 1 cut(s) 209
BsuI GTATCC 1 cut(s) 255
BtsCI GGATG 2 cut(s) 233, 391
BtsI GCAGTG 1 cut(s) 255
BtsIMutI CAGTG 1 cut(s) 255
Cac8I GCNNGC 1 cut(s) 195
CaiI CAGNNNCTG 1 cut(s) 254
CfoI GCGC 3 cut(s) 195, 197, 424
CviAII CATG 2 cut(s) 379, 425
CviJI RGCY 8 cut(s) 200, 335, 353, 365, 395, 416, 446, 462
CviKI_1 RGCY 8 cut(s) 200, 335, 353, 365, 395, 416, 446, 462
Eam1104I CTCTTC 2 cut(s) 99, 320
EarI CTCTTC 2 cut(s) 99, 320
Eco31I GGTCTC 1 cut(s) 174
Eco32I GATATC 1 cut(s) 48
EcoRV GATATC 1 cut(s) 48
FaeI CATG 2 cut(s) 382, 428
FaiI YATR 6 cut(s) 16, 158, 356, 380, 426, 480
FatI CATG 2 cut(s) 378, 424
FblI GTMKAC 1 cut(s) 302
Fnu4HI GCNGC 1 cut(s) 198
FokI GGATG 2 cut(s) 240, 398
Fsp4HI GCNGC 1 cut(s) 198
FspBI CTAG 3 cut(s) 336, 372, 473
GlaI GCGC 3 cut(s) 194, 196, 423
GluI GCNGC 1 cut(s) 198
GsaI CCCAGC 1 cut(s) 261
HhaI GCGC 3 cut(s) 195, 197, 424
Hin1II CATG 2 cut(s) 382, 428
Hin6I GCGC 3 cut(s) 193, 195, 422
HinP1I GCGC 3 cut(s) 193, 195, 422
HincII GTYRAC 1 cut(s) 303
HindII GTYRAC 1 cut(s) 303
HinfI GANTC 4 cut(s) 37, 184, 217, 375
HphI GGTGA 2 cut(s) 401, 440
Hpy166II GTNNAC 1 cut(s) 303
Hpy188I TCNGA 3 cut(s) 21, 36, 407
Hpy188III TCNNGA 2 cut(s) 188, 452
Hpy8I GTNNAC 1 cut(s) 303
HpyAV CCTTC 2 cut(s) 134, 449
HpyCH4III ACNGT 1 cut(s) 56
HpyF10VI GCNNNNNNNGC 2 cut(s) 254, 443
Hsp92II CATG 2 cut(s) 382, 428
HspAI GCGC 3 cut(s) 193, 195, 422
LpnPI CCDG 2 cut(s) 47, 243
Lsp1109I GCAGC 1 cut(s) 209
MaeI CTAG 3 cut(s) 336, 372, 473
MaeIII GTNAC 1 cut(s) 214
MboII GAAGA 3 cut(s) 94, 116, 337
MhlI GDGCHC 1 cut(s) 292
MluCI AATT 2 cut(s) 24, 490
MlyI GAGTC 1 cut(s) 211
MnlI CCTC 4 cut(s) 155, 200, 304, 307
MvnI CGCG 1 cut(s) 195
MwoI GCNNNNNNNGC 2 cut(s) 254, 443
NlaIII CATG 2 cut(s) 382, 428
NmuCI GTSAC 1 cut(s) 214
PauI GCGCGC 1 cut(s) 193
PfeI GAWTC 3 cut(s) 37, 184, 375
PkrI GCNGC 1 cut(s) 199
PleI GAGTC 1 cut(s) 211
PpsI GAGTC 1 cut(s) 211
PsiI TTATAA 1 cut(s) 158
PspFI CCCAGC 1 cut(s) 257
PstNI CAGNNNCTG 1 cut(s) 254
PteI GCGCGC 1 cut(s) 193
SalI GTCGAC 1 cut(s) 301
SatI GCNGC 1 cut(s) 198
SchI GAGTC 1 cut(s) 211
SduI GDGCHC 1 cut(s) 292
SetI ASST 7 cut(s) 125, 145, 166, 202, 337, 397, 460
SmlI CTYRAG 1 cut(s) 188
SmoI CTYRAG 1 cut(s) 188
Sse9I AATT 2 cut(s) 24, 490
SspMI CTAG 3 cut(s) 336, 372, 473
TaaI ACNGT 1 cut(s) 56
TaqI TCGA 1 cut(s) 302
TasI AATT 2 cut(s) 24, 490
TfiI GAWTC 3 cut(s) 37, 184, 375
TscAI CASTG 1 cut(s) 255
TseFI GTSAC 1 cut(s) 214
TseI GCWGC 1 cut(s) 197
Tsp45I GTSAC 1 cut(s) 214
TspDTI ATGAA 2 cut(s) 17, 58
TspGWI ACGGA 1 cut(s) 152
TspRI CASTG 1 cut(s) 255
XapI RAATTY 1 cut(s) 24
XmiI GTMKAC 1 cut(s) 302
XspI CTAG 3 cut(s) 336, 372, 473
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.