RchiOBHm_Chr6g0256801

B3 domain-containing protein Os01g0234100-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0004841
Physical Location & Seq
Forward (+)
12039754 .. 12041228
1475 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1059 bp
ATGGTCAAAGTTATGTTGCCATCACATGTCTCAGGAGGATTCTGGCTTGGTCTTTCTAAAACATTCTGCATTAAGCATTTGCCAAAGCAAGACACAATGTTTGTTTTAGAAGATGAAAATGGCAAGAAGTTCGAAACGAAGTATCTTGTTGAAAAGATAGGACTGAGTGGTGGATGGAGAGGGTTTTCAATTGCTCACAAGTTGCTGGCTGGAGATGTCTTAGTTTTTCATCTAGTCACAGAATCTAAGTTCAAGGTTTATGTTATTAGATCAAATGGCTTAGGTGAAGTGGAATGCGCTCTTGGCCTTGTCCAATTAGATGCTGACATTCGACCAGTAGATTCTGCAGATACTAATGCATGTGAAAGGGCAGAAAATGAGAATAGGGAACCTAAATCAGTGGAAAATCCTGATGGAGTTATTCAAAGGAACAAAACCGCAGCCTGTAATAGTAAACGTGGTATAGTGTCAGATCTGTTTGAAGATGACACTGAAGATGCTAGTTGTGAAGTTTTGGAAGGAATCAAGCTTTCAGAGTCTATTGTCCCTTTTGATGAAGTGTGCGGCATTGAGAACTTCAATGTCATCTACAATGGTTTAATCATAAATCCCCTGTTTCCGAAACCCCTTCTGACCAAGTACTATGAGCTCTGCTGCAGTCAAAACTCTTTCCTTCATGAGCACCTTCTTGAGGGTCTTAACTACAAACTGGTAGCTGGAATAATTTCCGAAACAACCAATATTGCAGATGCCATTAAAGCCTGCAAGATCACTACCTTGGAGAGTAGTTTCTCAACTTGGGATAAGACTTTGCAAGCCGGCGAGATGTTAGGCATGAATGTCAGCTTCCTGCGTGAGCAACTTGAACAGCTTGCGAGTCTTGCTTCAAAATTAAAAACGTGTGAAGAGGCTAGACTGGAAAGGGAGCAAGAAGAACAAGAGATGAGAACCAGGTTGGCAAAGCTTTTAGAAGTAAAAGAGAAGAAGGATAGGCTACAGTCTCGAATTTCAGTGAAGCTTATGTCCAGGTTCAAAGAAGTAATCGATGCTCCTTGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B3

Protein Analysis

352

Amino Acids

39.59

Weight (kDa)

5.33

Isoelectric Point (pI)

34.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B3 PF02362 2 - 91 1.9e-16 B3 DNA binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 438, 564
AcsI RAATTY 1 cut(s) 1005
AcuI CTGAAG 1 cut(s) 513
AfaI GTAC 1 cut(s) 641
AfiI CCNNNNNNNGG 1 cut(s) 691
AflIII ACRYGT 2 cut(s) 25, 899
AgsI TTSAA 9 cut(s) 152, 189, 253, 425, 482, 580, 866, 888, 1033
AjnI CCWGG 2 cut(s) 950, 1025
AjuI GAANNNNNNNTTGG 2 cut(s) 285, 317
AluBI AGCT 7 cut(s) 529, 649, 716, 846, 871, 964, 1018
AluI AGCT 7 cut(s) 529, 649, 716, 846, 871, 964, 1018
Alw21I GWGCWC 2 cut(s) 651, 684
Alw26I GTCTC 2 cut(s) 34, 1005
AoxI GGCC 1 cut(s) 304
ApeKI GCWGC 2 cut(s) 440, 654
ApoI RAATTY 1 cut(s) 1005
ArsI GACNNNNNNTTYG 2 cut(s) 83, 115
Asp700I GAANNNNTTC 1 cut(s) 724
AspLEI GCGC 1 cut(s) 299
AsuHPI GGTGA 1 cut(s) 296
AsuII TTCGAA 1 cut(s) 132
BanII GRGCYC 1 cut(s) 651
Bbv12I GWGCWC 2 cut(s) 651, 684
BbvI GCAGC 2 cut(s) 452, 641
BccI CCATC 3 cut(s) 28, 168, 407
BcgI CGANNNNNNTGC 2 cut(s) 112, 146
BciT130I CCWGG 2 cut(s) 952, 1027
BcoDI GTCTC 2 cut(s) 34, 1005
BfaI CTAG 3 cut(s) 233, 501, 912
BfmI CTRYAG 3 cut(s) 345, 655, 995
BglII AGATCT 1 cut(s) 472
BisI GCNGC 3 cut(s) 441, 565, 655
BlsI GCNGC 3 cut(s) 442, 566, 656
BmcAI AGTACT 1 cut(s) 641
Bme1390I CCNGG 2 cut(s) 952, 1027
BmiI GGNNCC 1 cut(s) 390
BmrFI CCNGG 2 cut(s) 952, 1027
BmsI GCATC 4 cut(s) 310, 487, 739, 1036
BpmI CTGGAG 1 cut(s) 231
Bpu10I CCTNAGC 1 cut(s) 280
Bpu14I TTCGAA 1 cut(s) 132
BpuEI CTTGAG 1 cut(s) 710
Bsa29I ATCGAT 1 cut(s) 1044
BsaJI CCNNGG 2 cut(s) 777, 1052
Bsc4I CCNNNNNNNGG 1 cut(s) 691
Bse118I RCCGGY 1 cut(s) 818
Bse1I ACTGG 3 cut(s) 335, 714, 921
BseBI CCWGG 2 cut(s) 952, 1027
BseCI ATCGAT 1 cut(s) 1044
BseDI CCNNGG 2 cut(s) 777, 1052
BseGI GGATG 1 cut(s) 179
BseLI CCNNNNNNNGG 1 cut(s) 691
BseMII CTCAG 2 cut(s) 45, 155
BseNI ACTGG 3 cut(s) 335, 714, 921
BseXI GCAGC 2 cut(s) 452, 641
BshFI GGCC 1 cut(s) 306
BshVI ATCGAT 1 cut(s) 1044
BsiHKAI GWGCWC 2 cut(s) 651, 684
BsiSI CCGG 1 cut(s) 819
BslFI GGGAC 1 cut(s) 530
BslI CCNNNNNNNGG 1 cut(s) 691
BsmAI GTCTC 2 cut(s) 34, 1005
BsmFI GGGAC 1 cut(s) 530
BsmI GAATGC 1 cut(s) 299
BsnI GGCC 1 cut(s) 306
Bsp119I TTCGAA 1 cut(s) 132
Bsp1286I GDGCHC 2 cut(s) 651, 684
Bsp143I GATC 3 cut(s) 269, 472, 768
BspACI CCGC 2 cut(s) 438, 564
BspANI GGCC 1 cut(s) 306
BspCNI CTCAG 2 cut(s) 44, 156
BspDI ATCGAT 1 cut(s) 1044
BspHI TCATGA 1 cut(s) 676
BspLI GGNNCC 1 cut(s) 390
BspMAI CTGCAG 2 cut(s) 349, 659
BspT104I TTCGAA 1 cut(s) 132
BsrFI RCCGGY 1 cut(s) 818
BsrI ACTGG 3 cut(s) 335, 714, 921
BssAI RCCGGY 1 cut(s) 818
BssECI CCNNGG 2 cut(s) 777, 1052
BssMI GATC 3 cut(s) 269, 472, 768
BssT1I CCWWGG 2 cut(s) 777, 1052
Bst2UI CCWGG 2 cut(s) 952, 1027
Bst4CI ACNGT 1 cut(s) 999
Bst6I CTCTTC 1 cut(s) 900
BstBI TTCGAA 1 cut(s) 132
BstC8I GCNNGC 5 cut(s) 207, 763, 816, 820, 873
BstDEI CTNAG 5 cut(s) 31, 164, 220, 246, 280
BstENI CCTNNNNNAGG 1 cut(s) 689
BstF5I GGATG 1 cut(s) 179
BstHHI GCGC 1 cut(s) 299
BstKTI GATC 3 cut(s) 272, 475, 771
BstMAI GTCTC 2 cut(s) 34, 1005
BstMBI GATC 3 cut(s) 269, 472, 768
BstMWI GCNNNNNNNGC 3 cut(s) 303, 758, 881
BstNI CCWGG 2 cut(s) 952, 1027
BstNSI RCATGY 2 cut(s) 29, 363
BstSCI CCNGG 2 cut(s) 950, 1025
BstSFI CTRYAG 3 cut(s) 345, 655, 995
BstV1I GCAGC 2 cut(s) 452, 641
BstX2I RGATCY 1 cut(s) 472
BstYI RGATCY 1 cut(s) 472
Bsu15I ATCGAT 1 cut(s) 1044
BsuRI GGCC 1 cut(s) 306
BsuTUI ATCGAT 1 cut(s) 1044
BtsCI GGATG 1 cut(s) 179
BtsIMutI CAGTG 3 cut(s) 405, 489, 1017
Cac8I GCNNGC 5 cut(s) 207, 763, 816, 820, 873
CciI TCATGA 1 cut(s) 676
CfoI GCGC 1 cut(s) 299
Cfr10I RCCGGY 1 cut(s) 818
ClaI ATCGAT 1 cut(s) 1044
CsiI ACCWGGT 1 cut(s) 950
Csp6I GTAC 1 cut(s) 640
CviAII CATG 4 cut(s) 26, 360, 677, 835
CviQI GTAC 1 cut(s) 640
DdeI CTNAG 5 cut(s) 31, 164, 220, 246, 280
DpnI GATC 3 cut(s) 271, 474, 770
DpnII GATC 3 cut(s) 269, 472, 768
Eam1104I CTCTTC 1 cut(s) 900
EarI CTCTTC 1 cut(s) 900
Ecl136II GAGCTC 1 cut(s) 649
Eco130I CCWWGG 2 cut(s) 777, 1052
Eco24I GRGCYC 1 cut(s) 651
Eco53kI GAGCTC 1 cut(s) 649
Eco57I CTGAAG 1 cut(s) 513
EcoICRI GAGCTC 1 cut(s) 649
EcoNI CCTNNNNNAGG 1 cut(s) 689
EcoRII CCWGG 2 cut(s) 950, 1025
EcoT14I CCWWGG 2 cut(s) 777, 1052
EcoT22I ATGCAT 1 cut(s) 361
EcoT38I GRGCYC 1 cut(s) 651
ErhI CCWWGG 2 cut(s) 777, 1052
FaeI CATG 4 cut(s) 29, 363, 680, 838
FaqI GGGAC 1 cut(s) 530
FatI CATG 4 cut(s) 25, 359, 676, 834
Fnu4HI GCNGC 3 cut(s) 441, 565, 655
FokI GGATG 1 cut(s) 186
FriOI GRGCYC 1 cut(s) 651
Fsp4HI GCNGC 3 cut(s) 441, 565, 655
FspBI CTAG 3 cut(s) 233, 501, 912
GlaI GCGC 1 cut(s) 298
GluI GCNGC 3 cut(s) 441, 565, 655
GsuI CTGGAG 1 cut(s) 231
HaeIII GGCC 1 cut(s) 306
HapII CCGG 1 cut(s) 819
HhaI GCGC 1 cut(s) 299
Hin1II CATG 4 cut(s) 29, 363, 680, 838
Hin6I GCGC 1 cut(s) 297
HinP1I GCGC 1 cut(s) 297
HindIII AAGCTT 3 cut(s) 527, 962, 1016
HinfI GANTC 6 cut(s) 39, 242, 341, 522, 536, 877
HpaII CCGG 1 cut(s) 819
HphI GGTGA 1 cut(s) 296
Hpy166II GTNNAC 1 cut(s) 455
Hpy188I TCNGA 5 cut(s) 472, 535, 621, 633, 730
Hpy188III TCNNGA 5 cut(s) 33, 410, 677, 689, 1002
Hpy8I GTNNAC 1 cut(s) 455
HpyAV CCTTC 5 cut(s) 512, 638, 683, 695, 979
HpyCH4III ACNGT 1 cut(s) 999
HpyCH4IV ACGT 2 cut(s) 457, 899
HpyCH4V TGCA 7 cut(s) 69, 347, 359, 657, 746, 765, 814
HpyF10VI GCNNNNNNNGC 3 cut(s) 303, 758, 881
HpyF3I CTNAG 5 cut(s) 31, 164, 220, 246, 280
HpySE526I ACGT 2 cut(s) 457, 899
Hsp92II CATG 4 cut(s) 29, 363, 680, 838
HspAI GCGC 1 cut(s) 297
KroI GCCGGC 1 cut(s) 818
KroNI GCCGGC 1 cut(s) 820
Kzo9I GATC 3 cut(s) 269, 472, 768
LmnI GCTCC 2 cut(s) 925, 1054
Lsp1109I GCAGC 2 cut(s) 452, 641
LweI GCATC 4 cut(s) 310, 487, 739, 1036
MabI ACCWGGT 1 cut(s) 950
MaeI CTAG 3 cut(s) 233, 501, 912
MaeII ACGT 2 cut(s) 457, 899
MaeIII GTNAC 1 cut(s) 235
MalI GATC 3 cut(s) 271, 474, 770
MboI GATC 3 cut(s) 269, 472, 768
MboII GAAGA 6 cut(s) 122, 494, 506, 917, 944, 994
MfeI CAATTG 1 cut(s) 189
MflI RGATCY 1 cut(s) 472
MhlI GDGCHC 2 cut(s) 651, 684
MluCI AATT 5 cut(s) 189, 314, 723, 890, 1005
MlyI GAGTC 2 cut(s) 545, 886
MnlI CCTC 4 cut(s) 29, 173, 685, 901
Mph1103I ATGCAT 1 cut(s) 361
MroNI GCCGGC 1 cut(s) 818
MroXI GAANNNNTTC 1 cut(s) 724
MseI TTAA 5 cut(s) 72, 599, 699, 756, 893
MspI CCGG 1 cut(s) 819
MspR9I CCNGG 2 cut(s) 952, 1027
MunI CAATTG 1 cut(s) 189
Mva1269I GAATGC 1 cut(s) 299
MvaI CCWGG 2 cut(s) 952, 1027
MwoI GCNNNNNNNGC 3 cut(s) 303, 758, 881
NaeI GCCGGC 1 cut(s) 820
NdeII GATC 3 cut(s) 269, 472, 768
NgoMIV GCCGGC 1 cut(s) 818
NlaIII CATG 4 cut(s) 29, 363, 680, 838
NlaIV GGNNCC 1 cut(s) 390
NmuCI GTSAC 1 cut(s) 235
NsiI ATGCAT 1 cut(s) 361
NspI RCATGY 2 cut(s) 29, 363
NspV TTCGAA 1 cut(s) 132
PagI TCATGA 1 cut(s) 676
PciI ACATGT 1 cut(s) 25
PctI GAATGC 1 cut(s) 299
PdiI GCCGGC 1 cut(s) 820
PdmI GAANNNNTTC 1 cut(s) 724
PfeI GAWTC 4 cut(s) 39, 242, 341, 522
PkrI GCNGC 3 cut(s) 442, 566, 656
PleI GAGTC 2 cut(s) 544, 885
PpsI GAGTC 2 cut(s) 544, 885
PscI ACATGT 1 cut(s) 25
Psp124BI GAGCTC 1 cut(s) 651
Psp6I CCWGG 2 cut(s) 950, 1025
PspGI CCWGG 2 cut(s) 950, 1025
PspN4I GGNNCC 1 cut(s) 390
PstI CTGCAG 2 cut(s) 349, 659
PsuI RGATCY 1 cut(s) 472
RsaI GTAC 1 cut(s) 641
RsaNI GTAC 1 cut(s) 640
SacI GAGCTC 1 cut(s) 651
SaqAI TTAA 5 cut(s) 72, 599, 699, 756, 893
SatI GCNGC 3 cut(s) 441, 565, 655
Sau3AI GATC 3 cut(s) 269, 472, 768
ScaI AGTACT 1 cut(s) 641
SchI GAGTC 2 cut(s) 545, 886
ScrFI CCNGG 2 cut(s) 952, 1027
SduI GDGCHC 2 cut(s) 651, 684
SexAI ACCWGGT 1 cut(s) 950
SfaNI GCATC 4 cut(s) 310, 487, 739, 1036
SfcI CTRYAG 3 cut(s) 345, 655, 995
SfuI TTCGAA 1 cut(s) 132
SmlI CTYRAG 1 cut(s) 689
SmoI CTYRAG 1 cut(s) 689
Sse9I AATT 5 cut(s) 189, 314, 723, 890, 1005
SsiI CCGC 2 cut(s) 438, 564
SspI AATATT 1 cut(s) 742
SspMI CTAG 3 cut(s) 233, 501, 912
SstI GAGCTC 1 cut(s) 651
StyD4I CCNGG 2 cut(s) 950, 1025
StyI CCWWGG 2 cut(s) 777, 1052
TaaI ACNGT 1 cut(s) 999
TaiI ACGT 2 cut(s) 460, 902
TaqI TCGA 4 cut(s) 132, 331, 1003, 1044
TasI AATT 5 cut(s) 189, 314, 723, 890, 1005
TatI WGTACW 1 cut(s) 639
TauI GCSGC 1 cut(s) 567
TfiI GAWTC 4 cut(s) 39, 242, 341, 522
Tru1I TTAA 5 cut(s) 72, 599, 699, 756, 893
Tru9I TTAA 5 cut(s) 72, 599, 699, 756, 893
TscAI CASTG 3 cut(s) 405, 496, 1017
TseFI GTSAC 1 cut(s) 235
TseI GCWGC 2 cut(s) 440, 654
Tsp45I GTSAC 1 cut(s) 235
TspDTI ATGAA 5 cut(s) 129, 218, 570, 665, 851
TspRI CASTG 3 cut(s) 405, 496, 1017
XagI CCTNNNNNAGG 1 cut(s) 689
XapI RAATTY 1 cut(s) 1005
XceI RCATGY 2 cut(s) 29, 363
XmnI GAANNNNTTC 1 cut(s) 724
XspI CTAG 3 cut(s) 233, 501, 912
ZrmI AGTACT 1 cut(s) 641
Zsp2I ATGCAT 1 cut(s) 361
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.