Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009227.1

Orthogroup ID

OG0004841

Physical Location & Seq

Genomic Coordinates Forward (+)

28498 .. 28897

Gene Structure 400 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009227.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 291 bp

atggagcaatgccgcgtggaggtagaaggcctatgggtcgtgaacttcttttcccggagaagaagcaatgacggtttcatgttctatttcactccccgatgggggttcttttcacccttccctcacgaacggatggtagcccaatttgaagaacagttagatcgtgctaaaggaggaaaacgaaaagtgactagacaggaaacagctcggtgtccgattgggacgtgccttacctttccggaaagggaatcacgccagaaacaagactcatctctttgccatgagctgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

96

Amino Acids

11.47

Weight (kDa)

8.86

Isoelectric Point (pI)

80.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004841)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g06290 FvH4_2g06290 FvH4_2g06290
rosa_chinensis	RchiOBHm_Chr6g0256801 RchiOBHm_Chr7g0241311
rosa_laevigata	RLG00000014644
rosa_multiflora	Rmu_sc0000857.1_g000026 Rmu_sc0001070.1_g000027 Rmu_sc0001256.1_g000010 Rmu_sc0003076.1_g000019 Rmu_sc0004277.1_g000042 Rmu_sc0006763.1_g000019 Rmu_sc0007548.1_g000009 Rmu_sc0007633.1_g000016 Rmu_sc0009227.1_g000008 Rmu_sc0009719.1_g000005 Rmu_sc0014303.1_g000002 Rmu_sc0017785.1_g000012
rosa_roxburghii	Rroxscaffold_1G00028540 Rroxscaffold_2G00109820 Rroxscaffold_7G00208170 Rroxscaffold_7G00208180
rosa_rugosa	Rorug05G0577900
rosa_samantha	Rh2AG393100 Rh2BG377300 Rh2CG379800 Rh2DG415700 Rh6AG096300 Rh6BG087500 Rh6CG083400 Rh6DG079200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	15
AccIII	TCCGGA	1 cut(s)	238
AciI	CCGC	1 cut(s)	13
AfiI	CCNNNNNNNGG	3 cut(s)	19, 101, 102
AgsI	TTSAA	1 cut(s)	149
AjiI	CACGTC	1 cut(s)	225
AloI	GAACNNNNNNTCC	2 cut(s)	35, 67
AluBI	AGCT	2 cut(s)	206, 286
AluI	AGCT	2 cut(s)	206, 286
Aor13HI	TCCGGA	1 cut(s)	238
AoxI	GGCC	1 cut(s)	28
AsuC2I	CCSGG	1 cut(s)	55
AsuHPI	GGTGA	1 cut(s)	105
BccI	CCATC	2 cut(s)	93, 127
BcnI	CCSGG	1 cut(s)	55
BfaI	CTAG	1 cut(s)	192
BfmI	CTRYAG	1 cut(s)	287
BisI	GCNGC	1 cut(s)	13
BlsI	GCNGC	1 cut(s)	14
Bme1390I	CCNGG	1 cut(s)	55
BmgBI	CACGTC	1 cut(s)	225
BmrFI	CCNGG	1 cut(s)	55
BpuMI	CCSGG	1 cut(s)	55
BsaWI	WCCGGW	1 cut(s)	238
Bsc4I	CCNNNNNNNGG	3 cut(s)	19, 101, 102
Bse3DI	GCAATG	2 cut(s)	14, 73
BseAI	TCCGGA	1 cut(s)	238
BseGI	GGATG	1 cut(s)	138
BseLI	CCNNNNNNNGG	3 cut(s)	19, 101, 102
BseMI	GCAATG	2 cut(s)	14, 73
Bsh1236I	CGCG	1 cut(s)	15
BshFI	GGCC	1 cut(s)	30
BsiSI	CCGG	2 cut(s)	55, 239
BslFI	GGGAC	1 cut(s)	235
BslI	CCNNNNNNNGG	3 cut(s)	19, 101, 102
BsmFI	GGGAC	1 cut(s)	235
BsnI	GGCC	1 cut(s)	30
Bsp13I	TCCGGA	1 cut(s)	238
Bsp143I	GATC	1 cut(s)	160
BspACI	CCGC	1 cut(s)	13
BspANI	GGCC	1 cut(s)	30
BspEI	TCCGGA	1 cut(s)	238
BspFNI	CGCG	1 cut(s)	15
BsrDI	GCAATG	2 cut(s)	14, 73
BssMI	GATC	1 cut(s)	160
Bst4CI	ACNGT	2 cut(s)	74, 156
BstF5I	GGATG	1 cut(s)	138
BstFNI	CGCG	1 cut(s)	15
BstKTI	GATC	1 cut(s)	163
BstMBI	GATC	1 cut(s)	160
BstSCI	CCNGG	1 cut(s)	53
BstSFI	CTRYAG	1 cut(s)	287
BstUI	CGCG	1 cut(s)	15
BsuRI	GGCC	1 cut(s)	30
BtrI	CACGTC	1 cut(s)	225
BtsCI	GGATG	1 cut(s)	138
CviAII	CATG	2 cut(s)	79, 281
CviJI	RGCY	4 cut(s)	30, 140, 206, 286
CviKI_1	RGCY	4 cut(s)	30, 140, 206, 286
DpnI	GATC	1 cut(s)	162
DpnII	GATC	1 cut(s)	160
Eco147I	AGGCCT	1 cut(s)	30
FaeI	CATG	2 cut(s)	82, 284
FaiI	YATR	3 cut(s)	34, 80, 282
FaqI	GGGAC	1 cut(s)	235
FatI	CATG	2 cut(s)	78, 280
Fnu4HI	GCNGC	1 cut(s)	13
FokI	GGATG	1 cut(s)	145
Fsp4HI	GCNGC	1 cut(s)	13
FspBI	CTAG	1 cut(s)	192
GluI	GCNGC	1 cut(s)	13
HaeIII	GGCC	1 cut(s)	30
HapII	CCGG	2 cut(s)	55, 239
Hin1II	CATG	2 cut(s)	82, 284
HinfI	GANTC	2 cut(s)	248, 266
HpaII	CCGG	2 cut(s)	55, 239
HphI	GGTGA	1 cut(s)	105
Hpy166II	GTNNAC	1 cut(s)	43
Hpy188I	TCNGA	1 cut(s)	216
Hpy188III	TCNNGA	3 cut(s)	40, 125, 239
Hpy8I	GTNNAC	1 cut(s)	43
HpyAV	CCTTC	2 cut(s)	20, 127
HpyCH4III	ACNGT	2 cut(s)	74, 156
HpyCH4IV	ACGT	1 cut(s)	224
HpySE526I	ACGT	1 cut(s)	224
Hsp92II	CATG	2 cut(s)	82, 284
Kpn2I	TCCGGA	1 cut(s)	238
Kzo9I	GATC	1 cut(s)	160
LmnI	GCTCC	1 cut(s)	4
LpnPI	CCDG	4 cut(s)	68, 182, 252, 269
MaeI	CTAG	1 cut(s)	192
MaeII	ACGT	1 cut(s)	224
MaeIII	GTNAC	1 cut(s)	187
MalI	GATC	1 cut(s)	162
MboI	GATC	1 cut(s)	160
MboII	GAAGA	2 cut(s)	72, 161
MluCI	AATT	1 cut(s)	143
MlyI	GAGTC	1 cut(s)	260
MnlI	CCTC	3 cut(s)	13, 132, 167
MroI	TCCGGA	1 cut(s)	238
MspI	CCGG	2 cut(s)	55, 239
MspR9I	CCNGG	1 cut(s)	55
MvnI	CGCG	1 cut(s)	15
NciI	CCSGG	1 cut(s)	55
NdeII	GATC	1 cut(s)	160
NlaIII	CATG	2 cut(s)	82, 284
NmuCI	GTSAC	1 cut(s)	187
PceI	AGGCCT	1 cut(s)	30
PfeI	GAWTC	1 cut(s)	248
PfoI	TCCNGGA	1 cut(s)	53
PkrI	GCNGC	1 cut(s)	14
PleI	GAGTC	1 cut(s)	260
PpsI	GAGTC	1 cut(s)	260
SatI	GCNGC	1 cut(s)	13
Sau3AI	GATC	1 cut(s)	160
SchI	GAGTC	1 cut(s)	260
ScrFI	CCNGG	1 cut(s)	55
SetI	ASST	5 cut(s)	24, 208, 227, 236, 288
SfcI	CTRYAG	1 cut(s)	287
Sse9I	AATT	1 cut(s)	143
SseBI	AGGCCT	1 cut(s)	30
SsiI	CCGC	1 cut(s)	13
SspMI	CTAG	1 cut(s)	192
StuI	AGGCCT	1 cut(s)	30
StyD4I	CCNGG	1 cut(s)	53
TaaI	ACNGT	2 cut(s)	74, 156
TaiI	ACGT	1 cut(s)	227
TasI	AATT	1 cut(s)	143
TauI	GCSGC	1 cut(s)	15
TfiI	GAWTC	1 cut(s)	248
TseFI	GTSAC	1 cut(s)	187
Tsp45I	GTSAC	1 cut(s)	187
TspDTI	ATGAA	1 cut(s)	67
TspGWI	ACGGA	1 cut(s)	145
XspI	CTAG	1 cut(s)	192

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.