Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0004841

Physical Location & Seq

Genomic Coordinates Reverse (-)

53310312 .. 53329647

Gene Structure 19336 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG377300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 258 bp

ATGTGCTATGAGATGAACAATGTAGGTCAGGCTTGCACGAAAGGTGAGGCCAAGAGCACTTACGGAACTGGTGCTTTTATTCTTCTGAACACTGGTGAAGAGATAACTCTGTCGAAGCATGGGCTTCTAAGCACTTTGTCATTCAAACTTGGACCTAAAGCTCCTGTAAGTTATGCTCTAGAAGGATCCATTGCTATTGCTGGAGCTGCAGTTCAGTGGCTTAGAGACGGTCTTGGGATTGTTAAGAGTGCAAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004370 GO:0005975 GO:0006066 GO:0006071 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019400 GO:0019751 GO:0044237 GO:0044238 GO:0044262 GO:0044281 GO:0071704 GO:1901615

KEGG Pathways

Metabolic & Signaling

ko00561 ko01100 ko03320 ko04626 map00561 map01100 map03320 map04626

Pfam Domains

Protein Families

FGGY_C FGGY_N

Protein Analysis

85

Amino Acids

8.81

Weight (kDa)

7.77

Isoelectric Point (pI)

20.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FGGY_C	PF02782	18 - 79	8.7e-08	FGGY family of carbohydrate kinases, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004841)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g06290 FvH4_2g06290 FvH4_2g06290
rosa_chinensis	RchiOBHm_Chr6g0256801 RchiOBHm_Chr7g0241311
rosa_laevigata	RLG00000014644
rosa_multiflora	Rmu_sc0000857.1_g000026 Rmu_sc0001070.1_g000027 Rmu_sc0001256.1_g000010 Rmu_sc0003076.1_g000019 Rmu_sc0004277.1_g000042 Rmu_sc0006763.1_g000019 Rmu_sc0007548.1_g000009 Rmu_sc0007633.1_g000016 Rmu_sc0009227.1_g000008 Rmu_sc0009719.1_g000005 Rmu_sc0014303.1_g000002 Rmu_sc0017785.1_g000012
rosa_roxburghii	Rroxscaffold_1G00028540 Rroxscaffold_2G00109820 Rroxscaffold_7G00208170 Rroxscaffold_7G00208180
rosa_rugosa	Rorug05G0577900
rosa_samantha	Rh2AG393100 Rh2BG377300 Rh2CG379800 Rh2DG415700 Rh6AG096300 Rh6BG087500 Rh6CG083400 Rh6DG079200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	180, 193
AgsI	TTSAA	1 cut(s)	145
AloI	GAACNNNNNNTCC	2 cut(s)	195, 227
AluBI	AGCT	3 cut(s)	161, 206, 255
AluI	AGCT	3 cut(s)	161, 206, 255
Alw21I	GWGCWC	1 cut(s)	59
Alw26I	GTCTC	1 cut(s)	219
AlwI	GGATC	2 cut(s)	180, 193
AoxI	GGCC	1 cut(s)	48
ApeKI	GCWGC	1 cut(s)	206
AspS9I	GGNCC	1 cut(s)	152
AsuHPI	GGTGA	2 cut(s)	56, 107
AvaII	GGWCC	1 cut(s)	152
BamHI	GGATCC	1 cut(s)	185
Bbv12I	GWGCWC	1 cut(s)	59
BbvI	GCAGC	1 cut(s)	193
BcoDI	GTCTC	1 cut(s)	219
BfaI	CTAG	2 cut(s)	179, 256
BfmI	CTRYAG	1 cut(s)	207
BisI	GCNGC	1 cut(s)	207
BlsI	GCNGC	1 cut(s)	208
Bme18I	GGWCC	1 cut(s)	152
BmgT120I	GGNCC	1 cut(s)	152
BmiI	GGNNCC	1 cut(s)	187
BpmI	CTGGAG	1 cut(s)	222
BsaXI	ACNNNNNCTCC	2 cut(s)	195, 225
Bse1I	ACTGG	2 cut(s)	73, 97
Bse3DI	GCAATG	1 cut(s)	189
BseMI	GCAATG	1 cut(s)	189
BseNI	ACTGG	2 cut(s)	73, 97
BseXI	GCAGC	1 cut(s)	193
BshFI	GGCC	1 cut(s)	50
BsiHKAI	GWGCWC	1 cut(s)	59
BsmAI	GTCTC	1 cut(s)	219
BsmBI	CGTCTC	1 cut(s)	219
BsnI	GGCC	1 cut(s)	50
Bsp1286I	GDGCHC	1 cut(s)	59
Bsp143I	GATC	1 cut(s)	185
BspANI	GGCC	1 cut(s)	50
BspLI	GGNNCC	1 cut(s)	187
BspMAI	CTGCAG	1 cut(s)	211
BspPI	GGATC	2 cut(s)	180, 193
BsrDI	GCAATG	1 cut(s)	189
BsrI	ACTGG	2 cut(s)	73, 97
BssMI	GATC	1 cut(s)	185
Bst4CI	ACNGT	1 cut(s)	230
Bst6I	CTCTTC	1 cut(s)	93
BstC8I	GCNNGC	2 cut(s)	34, 253
BstDEI	CTNAG	2 cut(s)	128, 221
BstKTI	GATC	1 cut(s)	188
BstMAI	GTCTC	1 cut(s)	219
BstMBI	GATC	1 cut(s)	185
BstMWI	GCNNNNNNNGC	1 cut(s)	206
BstSFI	CTRYAG	1 cut(s)	207
BstV1I	GCAGC	1 cut(s)	193
BstX2I	RGATCY	1 cut(s)	185
BstYI	RGATCY	1 cut(s)	185
BsuRI	GGCC	1 cut(s)	50
BtsIMutI	CAGTG	2 cut(s)	90, 221
Cac8I	GCNNGC	2 cut(s)	34, 253
Cfr13I	GGNCC	1 cut(s)	152
CviAII	CATG	1 cut(s)	119
CviJI	RGCY	7 cut(s)	32, 50, 124, 161, 206, 220, 255
CviKI_1	RGCY	7 cut(s)	32, 50, 124, 161, 206, 220, 255
DdeI	CTNAG	2 cut(s)	128, 221
DpnI	GATC	1 cut(s)	187
DpnII	GATC	1 cut(s)	185
Eam1104I	CTCTTC	1 cut(s)	93
EarI	CTCTTC	1 cut(s)	93
Eco47I	GGWCC	1 cut(s)	152
Esp3I	CGTCTC	1 cut(s)	219
FaeI	CATG	1 cut(s)	122
FaiI	YATR	3 cut(s)	9, 120, 174
FatI	CATG	1 cut(s)	118
Fnu4HI	GCNGC	1 cut(s)	207
Fsp4HI	GCNGC	1 cut(s)	207
FspBI	CTAG	2 cut(s)	179, 256
GluI	GCNGC	1 cut(s)	207
GsuI	CTGGAG	1 cut(s)	222
HaeIII	GGCC	1 cut(s)	50
Hin1II	CATG	1 cut(s)	122
HphI	GGTGA	2 cut(s)	56, 107
Hpy188I	TCNGA	1 cut(s)	87
Hpy188III	TCNNGA	1 cut(s)	179
HpyAV	CCTTC	1 cut(s)	176
HpyCH4III	ACNGT	1 cut(s)	230
HpyCH4V	TGCA	3 cut(s)	36, 209, 251
HpyF10VI	GCNNNNNNNGC	1 cut(s)	206
HpyF3I	CTNAG	2 cut(s)	128, 221
Hsp92II	CATG	1 cut(s)	122
Kzo9I	GATC	1 cut(s)	185
LmnI	GCTCC	2 cut(s)	166, 203
LpnPI	CCDG	5 cut(s)	14, 54, 78, 177, 186
Lsp1109I	GCAGC	1 cut(s)	193
MaeI	CTAG	2 cut(s)	179, 256
MalI	GATC	1 cut(s)	187
MboI	GATC	1 cut(s)	185
MboII	GAAGA	2 cut(s)	74, 110
MflI	RGATCY	1 cut(s)	185
MhlI	GDGCHC	1 cut(s)	59
MnlI	CCTC	1 cut(s)	40
MseI	TTAA	1 cut(s)	243
MwoI	GCNNNNNNNGC	1 cut(s)	206
NdeII	GATC	1 cut(s)	185
NlaIII	CATG	1 cut(s)	122
NlaIV	GGNNCC	1 cut(s)	187
PkrI	GCNGC	1 cut(s)	208
PspN4I	GGNNCC	1 cut(s)	187
PspPI	GGNCC	1 cut(s)	152
PstI	CTGCAG	1 cut(s)	211
PsuI	RGATCY	1 cut(s)	185
SaqAI	TTAA	1 cut(s)	243
SatI	GCNGC	1 cut(s)	207
Sau3AI	GATC	1 cut(s)	185
Sau96I	GGNCC	1 cut(s)	152
SduI	GDGCHC	1 cut(s)	59
SetI	ASST	6 cut(s)	28, 46, 157, 163, 208, 257
SfcI	CTRYAG	1 cut(s)	207
SinI	GGWCC	1 cut(s)	152
SspMI	CTAG	2 cut(s)	179, 256
TaaI	ACNGT	1 cut(s)	230
TaqI	TCGA	1 cut(s)	113
Tru1I	TTAA	1 cut(s)	243
Tru9I	TTAA	1 cut(s)	243
TscAI	CASTG	2 cut(s)	97, 221
TseI	GCWGC	1 cut(s)	206
TspDTI	ATGAA	1 cut(s)	29
TspGWI	ACGGA	1 cut(s)	78
TspRI	CASTG	2 cut(s)	97, 221
VpaK11BI	GGWCC	1 cut(s)	152
XbaI	TCTAGA	1 cut(s)	178
XspI	CTAG	2 cut(s)	179, 256

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.