Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007548.1

Orthogroup ID

OG0004841

Physical Location & Seq

Genomic Coordinates Reverse (-)

53434 .. 53763

Gene Structure 330 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007548.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 330 bp

atggcaatcaactttgacataagcgcaggttttcatgactatcaagcaggacaattccacttatgcatggaaaacttgactgtggtagtagagactttgagactgtactgttgcatcagtgactttcttttctttctgagccgatccatggatgatgcagagcggatggcggcccaatttgaggaacagttagatcgtgctaaaggaggaaaacgaaaagtgactagtagacaggaaatggcagttcggtgtctgattgggacacaccttacctttccggaaagggaatcgcgccagaaacaagactcattgctatgctatgagctgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

109

Amino Acids

12.65

Weight (kDa)

5.56

Isoelectric Point (pI)

47.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004841)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g06290 FvH4_2g06290 FvH4_2g06290
rosa_chinensis	RchiOBHm_Chr6g0256801 RchiOBHm_Chr7g0241311
rosa_laevigata	RLG00000014644
rosa_multiflora	Rmu_sc0000857.1_g000026 Rmu_sc0001070.1_g000027 Rmu_sc0001256.1_g000010 Rmu_sc0003076.1_g000019 Rmu_sc0004277.1_g000042 Rmu_sc0006763.1_g000019 Rmu_sc0007548.1_g000009 Rmu_sc0007633.1_g000016 Rmu_sc0009227.1_g000008 Rmu_sc0009719.1_g000005 Rmu_sc0014303.1_g000002 Rmu_sc0017785.1_g000012
rosa_roxburghii	Rroxscaffold_1G00028540 Rroxscaffold_2G00109820 Rroxscaffold_7G00208170 Rroxscaffold_7G00208180
rosa_rugosa	Rorug05G0577900
rosa_samantha	Rh2AG393100 Rh2BG377300 Rh2CG379800 Rh2DG415700 Rh6AG096300 Rh6BG087500 Rh6CG083400 Rh6DG079200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	17
AccBSI	CCGCTC	1 cut(s)	163
AccI	GTMKAC	1 cut(s)	229
AccII	CGCG	1 cut(s)	292
AccIII	TCCGGA	1 cut(s)	277
AciI	CCGC	2 cut(s)	163, 170
AclWI	GGATC	1 cut(s)	138
AfaI	GTAC	1 cut(s)	107
AfiI	CCNNNNNNNGG	2 cut(s)	148, 181
AhlI	ACTAGT	1 cut(s)	224
AluBI	AGCT	1 cut(s)	325
AluI	AGCT	1 cut(s)	325
Alw26I	GTCTC	2 cut(s)	86, 94
AlwI	GGATC	1 cut(s)	138
Aor13HI	TCCGGA	1 cut(s)	277
AoxI	GGCC	1 cut(s)	171
AspLEI	GCGC	2 cut(s)	26, 294
AspS9I	GGNCC	1 cut(s)	172
BccI	CCATC	1 cut(s)	160
BcoDI	GTCTC	2 cut(s)	86, 94
BcuI	ACTAGT	1 cut(s)	224
BfaI	CTAG	1 cut(s)	225
BfmI	CTRYAG	1 cut(s)	326
BfuAI	ACCTGC	1 cut(s)	17
BisI	GCNGC	1 cut(s)	171
BlsI	GCNGC	1 cut(s)	172
BmgT120I	GGNCC	1 cut(s)	172
BmsI	GCATC	2 cut(s)	123, 145
BsaJI	CCNNGG	1 cut(s)	147
BsaWI	WCCGGW	1 cut(s)	277
Bsc4I	CCNNNNNNNGG	2 cut(s)	148, 181
Bse3DI	GCAATG	1 cut(s)	308
BseAI	TCCGGA	1 cut(s)	277
BseDI	CCNNGG	1 cut(s)	147
BseGI	GGATG	2 cut(s)	157, 171
BseLI	CCNNNNNNNGG	2 cut(s)	148, 181
BseMI	GCAATG	1 cut(s)	308
BseMII	CTCAG	1 cut(s)	128
Bsh1236I	CGCG	1 cut(s)	292
BshFI	GGCC	1 cut(s)	173
BsiSI	CCGG	1 cut(s)	278
BslFI	GGGAC	1 cut(s)	274
BslI	CCNNNNNNNGG	2 cut(s)	148, 181
BsmAI	GTCTC	2 cut(s)	86, 94
BsmFI	GGGAC	1 cut(s)	274
BsnI	GGCC	1 cut(s)	173
Bsp13I	TCCGGA	1 cut(s)	277
Bsp143I	GATC	2 cut(s)	143, 193
Bsp19I	CCATGG	1 cut(s)	147
BspACI	CCGC	2 cut(s)	163, 170
BspANI	GGCC	1 cut(s)	173
BspCNI	CTCAG	1 cut(s)	129
BspEI	TCCGGA	1 cut(s)	277
BspFNI	CGCG	1 cut(s)	292
BspHI	TCATGA	1 cut(s)	34
BspMI	ACCTGC	1 cut(s)	17
BspPI	GGATC	1 cut(s)	138
BsrBI	CCGCTC	1 cut(s)	163
BsrDI	GCAATG	1 cut(s)	308
BssECI	CCNNGG	1 cut(s)	147
BssMI	GATC	2 cut(s)	143, 193
BssT1I	CCWWGG	1 cut(s)	147
Bst4CI	ACNGT	4 cut(s)	82, 105, 110, 189
BstDEI	CTNAG	1 cut(s)	137
BstDSI	CCRYGG	1 cut(s)	147
BstF5I	GGATG	2 cut(s)	157, 171
BstFNI	CGCG	1 cut(s)	292
BstHHI	GCGC	2 cut(s)	26, 294
BstKTI	GATC	2 cut(s)	146, 196
BstMAI	GTCTC	2 cut(s)	86, 94
BstMBI	GATC	2 cut(s)	143, 193
BstSFI	CTRYAG	1 cut(s)	326
BstUI	CGCG	1 cut(s)	292
BsuRI	GGCC	1 cut(s)	173
BtgI	CCRYGG	1 cut(s)	147
BtsCI	GGATG	2 cut(s)	157, 171
BtsIMutI	CAGTG	1 cut(s)	124
BveI	ACCTGC	1 cut(s)	17
CciI	TCATGA	1 cut(s)	34
CfoI	GCGC	2 cut(s)	26, 294
Cfr13I	GGNCC	1 cut(s)	172
Csp6I	GTAC	1 cut(s)	106
CviAII	CATG	3 cut(s)	35, 67, 148
CviJI	RGCY	3 cut(s)	141, 173, 325
CviKI_1	RGCY	3 cut(s)	141, 173, 325
CviQI	GTAC	1 cut(s)	106
DdeI	CTNAG	1 cut(s)	137
DpnI	GATC	2 cut(s)	145, 195
DpnII	GATC	2 cut(s)	143, 193
Eco130I	CCWWGG	1 cut(s)	147
EcoT14I	CCWWGG	1 cut(s)	147
EcoT22I	ATGCAT	1 cut(s)	68
ErhI	CCWWGG	1 cut(s)	147
FaeI	CATG	3 cut(s)	38, 70, 151
FaiI	YATR	7 cut(s)	20, 36, 64, 68, 149, 316, 321
FaqI	GGGAC	1 cut(s)	274
FatI	CATG	3 cut(s)	34, 66, 147
FblI	GTMKAC	1 cut(s)	229
Fnu4HI	GCNGC	1 cut(s)	171
FokI	GGATG	2 cut(s)	164, 178
Fsp4HI	GCNGC	1 cut(s)	171
FspBI	CTAG	1 cut(s)	225
GlaI	GCGC	2 cut(s)	25, 293
GluI	GCNGC	1 cut(s)	171
HaeIII	GGCC	1 cut(s)	173
HapII	CCGG	1 cut(s)	278
HhaI	GCGC	2 cut(s)	26, 294
Hin1II	CATG	3 cut(s)	38, 70, 151
Hin6I	GCGC	2 cut(s)	24, 292
HinP1I	GCGC	2 cut(s)	24, 292
HinfI	GANTC	2 cut(s)	287, 305
HpaII	CCGG	1 cut(s)	278
Hpy166II	GTNNAC	1 cut(s)	230
Hpy188I	TCNGA	2 cut(s)	138, 255
Hpy188III	TCNNGA	2 cut(s)	35, 278
Hpy8I	GTNNAC	1 cut(s)	230
HpyCH4III	ACNGT	4 cut(s)	82, 105, 110, 189
HpyCH4V	TGCA	3 cut(s)	66, 114, 158
HpyF3I	CTNAG	1 cut(s)	137
Hsp92II	CATG	3 cut(s)	38, 70, 151
HspAI	GCGC	2 cut(s)	24, 292
Kpn2I	TCCGGA	1 cut(s)	277
Kzo9I	GATC	2 cut(s)	143, 193
LpnPI	CCDG	5 cut(s)	12, 33, 218, 291, 308
LweI	GCATC	2 cut(s)	123, 145
MaeI	CTAG	1 cut(s)	225
MaeIII	GTNAC	2 cut(s)	119, 220
MalI	GATC	2 cut(s)	145, 195
MbiI	CCGCTC	1 cut(s)	163
MboI	GATC	2 cut(s)	143, 193
MluCI	AATT	2 cut(s)	53, 176
MlyI	GAGTC	1 cut(s)	299
MnlI	CCTC	2 cut(s)	175, 200
Mph1103I	ATGCAT	1 cut(s)	68
MroI	TCCGGA	1 cut(s)	277
MslI	CAYNNNNRTG	1 cut(s)	313
MspI	CCGG	1 cut(s)	278
MvnI	CGCG	1 cut(s)	292
NcoI	CCATGG	1 cut(s)	147
NdeII	GATC	2 cut(s)	143, 193
NlaIII	CATG	3 cut(s)	38, 70, 151
NmuCI	GTSAC	2 cut(s)	119, 220
NsiI	ATGCAT	1 cut(s)	68
PagI	TCATGA	1 cut(s)	34
PfeI	GAWTC	1 cut(s)	287
PkrI	GCNGC	1 cut(s)	172
PleI	GAGTC	1 cut(s)	299
PpsI	GAGTC	1 cut(s)	299
PspPI	GGNCC	1 cut(s)	172
RsaI	GTAC	1 cut(s)	107
RsaNI	GTAC	1 cut(s)	106
RseI	CAYNNNNRTG	1 cut(s)	313
SatI	GCNGC	1 cut(s)	171
Sau3AI	GATC	2 cut(s)	143, 193
Sau96I	GGNCC	1 cut(s)	172
SchI	GAGTC	1 cut(s)	299
SetI	ASST	4 cut(s)	31, 270, 275, 327
SfaNI	GCATC	2 cut(s)	123, 145
SfcI	CTRYAG	1 cut(s)	326
SmiMI	CAYNNNNRTG	1 cut(s)	313
SpeI	ACTAGT	1 cut(s)	224
Sse9I	AATT	2 cut(s)	53, 176
SsiI	CCGC	2 cut(s)	163, 170
SspMI	CTAG	1 cut(s)	225
StyI	CCWWGG	1 cut(s)	147
TaaI	ACNGT	4 cut(s)	82, 105, 110, 189
TasI	AATT	2 cut(s)	53, 176
TatI	WGTACW	1 cut(s)	105
TauI	GCSGC	1 cut(s)	173
TfiI	GAWTC	1 cut(s)	287
TscAI	CASTG	1 cut(s)	124
TseFI	GTSAC	2 cut(s)	119, 220
Tsp45I	GTSAC	2 cut(s)	119, 220
TspDTI	ATGAA	1 cut(s)	23
TspRI	CASTG	1 cut(s)	124
XmiI	GTMKAC	1 cut(s)	229
XspI	CTAG	1 cut(s)	225
Zsp2I	ATGCAT	1 cut(s)	68

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.