Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001256.1

Orthogroup ID

OG0004841

Physical Location & Seq

Genomic Coordinates Forward (+)

42532 .. 43157

Gene Structure 626 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001256.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 285 bp

atgtcctccggtcctcccacagaacagctgaaaattaatattgatggtgcttttagagtggattgtggagttggagcattgggtttggttagaggagatacctgctatgatgcagaacagatggcagtccaatttgaagaacaattggatcgtgctaaaggtagaaaacgaaaagtgactagtagacgtgaaatgggcttccggaatccgattgggacgcaccttacctttccggaaagggaatcgcgccagaaatcaaacgcgtggctatgccacgacctgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

94

Amino Acids

10.61

Weight (kDa)

8.57

Isoelectric Point (pI)

53.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004841)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g06290 FvH4_2g06290 FvH4_2g06290
rosa_chinensis	RchiOBHm_Chr6g0256801 RchiOBHm_Chr7g0241311
rosa_laevigata	RLG00000014644
rosa_multiflora	Rmu_sc0000857.1_g000026 Rmu_sc0001070.1_g000027 Rmu_sc0001256.1_g000010 Rmu_sc0003076.1_g000019 Rmu_sc0004277.1_g000042 Rmu_sc0006763.1_g000019 Rmu_sc0007548.1_g000009 Rmu_sc0007633.1_g000016 Rmu_sc0009227.1_g000008 Rmu_sc0009719.1_g000005 Rmu_sc0014303.1_g000002 Rmu_sc0017785.1_g000012
rosa_roxburghii	Rroxscaffold_1G00028540 Rroxscaffold_2G00109820 Rroxscaffold_7G00208170 Rroxscaffold_7G00208180
rosa_rugosa	Rorug05G0577900
rosa_samantha	Rh2AG393100 Rh2BG377300 Rh2CG379800 Rh2DG415700 Rh6AG096300 Rh6BG087500 Rh6CG083400 Rh6DG079200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	110
AccI	GTMKAC	1 cut(s)	184
AccII	CGCG	2 cut(s)	247, 263
AccIII	TCCGGA	2 cut(s)	201, 232
AclWI	GGATC	1 cut(s)	156
AflIII	ACRYGT	1 cut(s)	261
AgsI	TTSAA	1 cut(s)	137
AhlI	ACTAGT	1 cut(s)	179
AjiI	CACGTC	1 cut(s)	188
AluBI	AGCT	1 cut(s)	28
AluI	AGCT	1 cut(s)	28
AlwI	GGATC	1 cut(s)	156
Aor13HI	TCCGGA	2 cut(s)	201, 232
AseI	ATTAAT	1 cut(s)	36
AspLEI	GCGC	1 cut(s)	249
AspS9I	GGNCC	1 cut(s)	11
AvaII	GGWCC	1 cut(s)	11
BccI	CCATC	2 cut(s)	38, 115
BcuI	ACTAGT	1 cut(s)	179
BfaI	CTAG	1 cut(s)	180
BfuAI	ACCTGC	1 cut(s)	110
Bme18I	GGWCC	1 cut(s)	11
BmgBI	CACGTC	1 cut(s)	188
BmgT120I	GGNCC	1 cut(s)	11
BmsI	GCATC	1 cut(s)	100
BsaWI	WCCGGW	3 cut(s)	8, 201, 232
BseAI	TCCGGA	2 cut(s)	201, 232
BseRI	GAGGAG	1 cut(s)	108
Bsh1236I	CGCG	2 cut(s)	247, 263
BsiSI	CCGG	3 cut(s)	9, 202, 233
BslFI	GGGAC	1 cut(s)	229
BsmFI	GGGAC	1 cut(s)	229
Bsp13I	TCCGGA	2 cut(s)	201, 232
Bsp143I	GATC	1 cut(s)	148
BspEI	TCCGGA	2 cut(s)	201, 232
BspFNI	CGCG	2 cut(s)	247, 263
BspMI	ACCTGC	1 cut(s)	110
BspPI	GGATC	1 cut(s)	156
BssMI	GATC	1 cut(s)	148
BstFNI	CGCG	2 cut(s)	247, 263
BstHHI	GCGC	1 cut(s)	249
BstKTI	GATC	1 cut(s)	151
BstMBI	GATC	1 cut(s)	148
BstUI	CGCG	2 cut(s)	247, 263
BtrI	CACGTC	1 cut(s)	188
BveI	ACCTGC	1 cut(s)	110
CfoI	GCGC	1 cut(s)	249
Cfr13I	GGNCC	1 cut(s)	11
CseI	GACGC	1 cut(s)	226
CviJI	RGCY	3 cut(s)	28, 198, 268
CviKI_1	RGCY	3 cut(s)	28, 198, 268
DpnI	GATC	1 cut(s)	150
DpnII	GATC	1 cut(s)	148
Eco47I	GGWCC	1 cut(s)	11
FaiI	YATR	2 cut(s)	108, 271
FaqI	GGGAC	1 cut(s)	229
FblI	GTMKAC	1 cut(s)	184
FspBI	CTAG	1 cut(s)	180
GlaI	GCGC	1 cut(s)	248
HapII	CCGG	3 cut(s)	9, 202, 233
HgaI	GACGC	1 cut(s)	226
HhaI	GCGC	1 cut(s)	249
Hin6I	GCGC	1 cut(s)	247
HinP1I	GCGC	1 cut(s)	247
HinfI	GANTC	2 cut(s)	205, 242
HpaII	CCGG	3 cut(s)	9, 202, 233
Hpy166II	GTNNAC	1 cut(s)	185
Hpy188I	TCNGA	1 cut(s)	210
Hpy188III	TCNNGA	2 cut(s)	202, 233
Hpy8I	GTNNAC	1 cut(s)	185
HpyCH4IV	ACGT	1 cut(s)	187
HpyCH4V	TGCA	1 cut(s)	113
HpySE526I	ACGT	1 cut(s)	187
HspAI	GCGC	1 cut(s)	247
Kpn2I	TCCGGA	2 cut(s)	201, 232
Kzo9I	GATC	1 cut(s)	148
LmnI	GCTCC	1 cut(s)	74
LpnPI	CCDG	5 cut(s)	22, 115, 215, 246, 263
LweI	GCATC	1 cut(s)	100
MaeI	CTAG	1 cut(s)	180
MaeII	ACGT	1 cut(s)	187
MaeIII	GTNAC	1 cut(s)	175
MalI	GATC	1 cut(s)	150
MboI	GATC	1 cut(s)	148
MboII	GAAGA	1 cut(s)	149
MfeI	CAATTG	1 cut(s)	143
MluCI	AATT	3 cut(s)	33, 131, 143
MluI	ACGCGT	1 cut(s)	261
MmeI	TCCRAC	1 cut(s)	52
MnlI	CCTC	3 cut(s)	16, 24, 86
MroI	TCCGGA	2 cut(s)	201, 232
MseI	TTAA	1 cut(s)	36
MspA1I	CMGCKG	1 cut(s)	28
MspI	CCGG	3 cut(s)	9, 202, 233
MunI	CAATTG	1 cut(s)	143
MvnI	CGCG	2 cut(s)	247, 263
NdeII	GATC	1 cut(s)	148
NmuCI	GTSAC	1 cut(s)	175
PfeI	GAWTC	2 cut(s)	205, 242
PshBI	ATTAAT	1 cut(s)	36
PspPI	GGNCC	1 cut(s)	11
PvuII	CAGCTG	1 cut(s)	28
SaqAI	TTAA	1 cut(s)	36
Sau3AI	GATC	1 cut(s)	148
Sau96I	GGNCC	1 cut(s)	11
SetI	ASST	7 cut(s)	30, 104, 163, 190, 225, 230, 282
SfaNI	GCATC	1 cut(s)	100
SinI	GGWCC	1 cut(s)	11
SpeI	ACTAGT	1 cut(s)	179
Sse9I	AATT	3 cut(s)	33, 131, 143
SspI	AATATT	1 cut(s)	40
SspMI	CTAG	1 cut(s)	180
TaiI	ACGT	1 cut(s)	190
TasI	AATT	3 cut(s)	33, 131, 143
TfiI	GAWTC	2 cut(s)	205, 242
Tru1I	TTAA	1 cut(s)	36
Tru9I	TTAA	1 cut(s)	36
TseFI	GTSAC	1 cut(s)	175
Tsp45I	GTSAC	1 cut(s)	175
VpaK11BI	GGWCC	1 cut(s)	11
VspI	ATTAAT	1 cut(s)	36
XmiI	GTMKAC	1 cut(s)	184
XspI	CTAG	1 cut(s)	180

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.