Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007633.1

Orthogroup ID

OG0004841

Physical Location & Seq

Genomic Coordinates Reverse (-)

95293 .. 97558

Gene Structure 2266 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007633.1_g000016.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

atggttttaagtttggctgccggtattgatttggacttctatcagattacgactgaggttgcactggtgctgttatcttctgcaacagttctcctcactgtgccattcaaatatgttcttgcctttcttatcttcgatctcttcacgctggagcttgagttcaggagggagatggtcaaaagattcaaagatttcttgaaggagcgttgggacacagtgcctgctgcccctgtagttgtattaccatatggaagtaatgagtccacactagaacctgatagaaagagaaacaaggacgtagaaaaatctgaaaaaaaacagatggcagtccaatttgaagaacaattggatcgtgctaaaggtggaaaacgaaaagtgactagtagacgtgaaatgggcttctggagtccgattgggacgcaccttacctttccggaaagggaatcgcgccagaaatcaaactcgtctcttagccacgacctgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF639

Protein Analysis

161

Amino Acids

18.57

Weight (kDa)

8.83

Isoelectric Point (pI)

54.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004841)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g06290 FvH4_2g06290 FvH4_2g06290
rosa_chinensis	RchiOBHm_Chr6g0256801 RchiOBHm_Chr7g0241311
rosa_laevigata	RLG00000014644
rosa_multiflora	Rmu_sc0000857.1_g000026 Rmu_sc0001070.1_g000027 Rmu_sc0001256.1_g000010 Rmu_sc0003076.1_g000019 Rmu_sc0004277.1_g000042 Rmu_sc0006763.1_g000019 Rmu_sc0007548.1_g000009 Rmu_sc0007633.1_g000016 Rmu_sc0009227.1_g000008 Rmu_sc0009719.1_g000005 Rmu_sc0014303.1_g000002 Rmu_sc0017785.1_g000012
rosa_roxburghii	Rroxscaffold_1G00028540 Rroxscaffold_2G00109820 Rroxscaffold_7G00208170 Rroxscaffold_7G00208180
rosa_rugosa	Rorug05G0577900
rosa_samantha	Rh2AG393100 Rh2BG377300 Rh2CG379800 Rh2DG415700 Rh6AG096300 Rh6BG087500 Rh6CG083400 Rh6DG079200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	385
AccII	CGCG	1 cut(s)	448
AccIII	TCCGGA	1 cut(s)	433
AclWI	GGATC	1 cut(s)	357
AgsI	TTSAA	4 cut(s)	109, 187, 199, 338
AhlI	ACTAGT	1 cut(s)	380
AjiI	CACGTC	1 cut(s)	389
AloI	GAACNNNNNNTCC	2 cut(s)	143, 175
AluBI	AGCT	1 cut(s)	154
AluI	AGCT	1 cut(s)	154
Alw26I	GTCTC	1 cut(s)	471
AlwI	GGATC	1 cut(s)	357
AlwNI	CAGNNNCTG	1 cut(s)	221
Aor13HI	TCCGGA	1 cut(s)	433
ApeKI	GCWGC	2 cut(s)	17, 224
AspLEI	GCGC	1 cut(s)	450
BbvI	GCAGC	2 cut(s)	4, 211
BccI	CCATC	2 cut(s)	166, 316
BcoDI	GTCTC	1 cut(s)	471
BcuI	ACTAGT	1 cut(s)	380
BfaI	CTAG	2 cut(s)	269, 381
BfmI	CTRYAG	1 cut(s)	231
BisI	GCNGC	2 cut(s)	18, 225
BlsI	GCNGC	2 cut(s)	19, 226
BmgBI	CACGTC	1 cut(s)	389
BpmI	CTGGAG	2 cut(s)	170, 424
BpuEI	CTTGAG	1 cut(s)	176
BsaWI	WCCGGW	1 cut(s)	433
BsaXI	ACNNNNNCTCC	2 cut(s)	143, 173
Bse118I	RCCGGY	1 cut(s)	20
Bse1I	ACTGG	1 cut(s)	69
BseAI	TCCGGA	1 cut(s)	433
BseMII	CTCAG	1 cut(s)	45
BseNI	ACTGG	1 cut(s)	69
BseRI	GAGGAG	1 cut(s)	83
BseXI	GCAGC	2 cut(s)	4, 211
Bsh1236I	CGCG	1 cut(s)	448
BsiSI	CCGG	2 cut(s)	21, 434
BslFI	GGGAC	2 cut(s)	224, 430
BsmAI	GTCTC	1 cut(s)	471
BsmBI	CGTCTC	1 cut(s)	471
BsmFI	GGGAC	2 cut(s)	224, 430
Bsp13I	TCCGGA	1 cut(s)	433
Bsp143I	GATC	2 cut(s)	136, 349
BspCNI	CTCAG	1 cut(s)	46
BspEI	TCCGGA	1 cut(s)	433
BspFNI	CGCG	1 cut(s)	448
BspPI	GGATC	1 cut(s)	357
BsrFI	RCCGGY	1 cut(s)	20
BsrI	ACTGG	1 cut(s)	69
BssAI	RCCGGY	1 cut(s)	20
BssMI	GATC	2 cut(s)	136, 349
Bst4CI	ACNGT	3 cut(s)	88, 100, 217
Bst6I	CTCTTC	1 cut(s)	146
BstC8I	GCNNGC	1 cut(s)	222
BstDEI	CTNAG	2 cut(s)	54, 470
BstFNI	CGCG	1 cut(s)	448
BstHHI	GCGC	1 cut(s)	450
BstKTI	GATC	2 cut(s)	139, 352
BstMAI	GTCTC	1 cut(s)	471
BstMBI	GATC	2 cut(s)	136, 349
BstSFI	CTRYAG	1 cut(s)	231
BstUI	CGCG	1 cut(s)	448
BstV1I	GCAGC	2 cut(s)	4, 211
BtrI	CACGTC	1 cut(s)	389
BtsIMutI	CAGTG	3 cut(s)	62, 96, 222
Cac8I	GCNNGC	1 cut(s)	222
CaiI	CAGNNNCTG	1 cut(s)	221
CfoI	GCGC	1 cut(s)	450
Cfr10I	RCCGGY	1 cut(s)	20
CseI	GACGC	1 cut(s)	427
CviJI	RGCY	4 cut(s)	17, 154, 399, 474
CviKI_1	RGCY	4 cut(s)	17, 154, 399, 474
DdeI	CTNAG	2 cut(s)	54, 470
DpnI	GATC	2 cut(s)	138, 351
DpnII	GATC	2 cut(s)	136, 349
Eam1104I	CTCTTC	1 cut(s)	146
EarI	CTCTTC	1 cut(s)	146
Esp3I	CGTCTC	1 cut(s)	471
FaiI	YATR	3 cut(s)	114, 247, 249
FaqI	GGGAC	2 cut(s)	224, 430
FauNDI	CATATG	1 cut(s)	247
FblI	GTMKAC	1 cut(s)	385
Fnu4HI	GCNGC	2 cut(s)	18, 225
Fsp4HI	GCNGC	2 cut(s)	18, 225
FspBI	CTAG	2 cut(s)	269, 381
GlaI	GCGC	1 cut(s)	449
GluI	GCNGC	2 cut(s)	18, 225
GsuI	CTGGAG	2 cut(s)	170, 424
HapII	CCGG	2 cut(s)	21, 434
HgaI	GACGC	1 cut(s)	427
HhaI	GCGC	1 cut(s)	450
Hin6I	GCGC	1 cut(s)	448
HinP1I	GCGC	1 cut(s)	448
HinfI	GANTC	4 cut(s)	183, 260, 406, 443
HpaII	CCGG	2 cut(s)	21, 434
Hpy166II	GTNNAC	2 cut(s)	264, 386
Hpy188I	TCNGA	3 cut(s)	45, 310, 411
Hpy188III	TCNNGA	4 cut(s)	163, 196, 403, 434
Hpy8I	GTNNAC	2 cut(s)	264, 386
HpyAV	CCTTC	1 cut(s)	193
HpyCH4III	ACNGT	3 cut(s)	88, 100, 217
HpyCH4IV	ACGT	2 cut(s)	297, 388
HpyCH4V	TGCA	2 cut(s)	62, 83
HpyF3I	CTNAG	2 cut(s)	54, 470
HpySE526I	ACGT	2 cut(s)	297, 388
HspAI	GCGC	1 cut(s)	448
Kpn2I	TCCGGA	1 cut(s)	433
Kzo9I	GATC	2 cut(s)	136, 349
LmnI	GCTCC	2 cut(s)	151, 202
Lsp1109I	GCAGC	2 cut(s)	4, 211
MaeI	CTAG	2 cut(s)	269, 381
MaeII	ACGT	2 cut(s)	297, 388
MaeIII	GTNAC	1 cut(s)	376
MalI	GATC	2 cut(s)	138, 351
MboI	GATC	2 cut(s)	136, 349
MboII	GAAGA	4 cut(s)	69, 124, 133, 350
MfeI	CAATTG	1 cut(s)	344
MluCI	AATT	2 cut(s)	332, 344
MlyI	GAGTC	2 cut(s)	269, 415
MnlI	CCTC	3 cut(s)	49, 104, 159
MroI	TCCGGA	1 cut(s)	433
MseI	TTAA	1 cut(s)	8
MspI	CCGG	2 cut(s)	21, 434
MunI	CAATTG	1 cut(s)	344
MvnI	CGCG	1 cut(s)	448
NdeI	CATATG	1 cut(s)	247
NdeII	GATC	2 cut(s)	136, 349
NmuCI	GTSAC	1 cut(s)	376
PfeI	GAWTC	2 cut(s)	183, 443
PkrI	GCNGC	2 cut(s)	19, 226
PleI	GAGTC	2 cut(s)	268, 414
PpsI	GAGTC	2 cut(s)	268, 414
PstNI	CAGNNNCTG	1 cut(s)	221
SaqAI	TTAA	1 cut(s)	8
SatI	GCNGC	2 cut(s)	18, 225
Sau3AI	GATC	2 cut(s)	136, 349
SchI	GAGTC	2 cut(s)	269, 415
SetI	ASST	9 cut(s)	60, 156, 277, 300, 364, 391, 426, 431, 483
SfcI	CTRYAG	1 cut(s)	231
SmlI	CTYRAG	1 cut(s)	155
SmoI	CTYRAG	1 cut(s)	155
SpeI	ACTAGT	1 cut(s)	380
Sse9I	AATT	2 cut(s)	332, 344
SspMI	CTAG	2 cut(s)	269, 381
TaaI	ACNGT	3 cut(s)	88, 100, 217
TaiI	ACGT	2 cut(s)	300, 391
TaqI	TCGA	1 cut(s)	135
TasI	AATT	2 cut(s)	332, 344
TfiI	GAWTC	2 cut(s)	183, 443
Tru1I	TTAA	1 cut(s)	8
Tru9I	TTAA	1 cut(s)	8
TscAI	CASTG	3 cut(s)	69, 103, 222
TseFI	GTSAC	1 cut(s)	376
TseI	GCWGC	2 cut(s)	17, 224
Tsp45I	GTSAC	1 cut(s)	376
TspRI	CASTG	3 cut(s)	69, 103, 222
XmiI	GTMKAC	1 cut(s)	385
XspI	CTAG	2 cut(s)	269, 381

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.