Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0017785.1

Orthogroup ID

OG0004841

Physical Location & Seq

Genomic Coordinates Reverse (-)

40120 .. 41593

Gene Structure 1474 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0017785.1_g000012.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

atgcttatagcagtgggagatattgcatttgcttgctcgtatgctctcgtcctgtttgagattcaagacatactgaagtcatcgccaccagaaagcaaagtgatgaggagggctgttgtgatagggggttcgactatgacattattcttcatgatgtatgctagcttgggttatgctgcgctcggcaacaagacaccggaaaacgtgcttgctggttttggggatgagatgccctgggcattctggcttcttgatttggctaatttttgtattgtattgcacatagttggtgcatttcaggctgacatggagaacaacctttgtggtgttggcgactttcattgccatggcaatgccattcttcacagacattcttgcgcttcttggagctatctgatggcagtccaatttgaagaacaattggatcgtgctaaaggaggaaaacgaaaagtgactagtagacgtgaaatgggcttccggagtccgatggggacgcaccttacctttccagaaagggaatcgcgccagaaacaagactcattgcttagctatgagctgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Aa_trans

Protein Analysis

186

Amino Acids

20.79

Weight (kDa)

6.29

Isoelectric Point (pI)

54.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004841)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g06290 FvH4_2g06290 FvH4_2g06290
rosa_chinensis	RchiOBHm_Chr6g0256801 RchiOBHm_Chr7g0241311
rosa_laevigata	RLG00000014644
rosa_multiflora	Rmu_sc0000857.1_g000026 Rmu_sc0001070.1_g000027 Rmu_sc0001256.1_g000010 Rmu_sc0003076.1_g000019 Rmu_sc0004277.1_g000042 Rmu_sc0006763.1_g000019 Rmu_sc0007548.1_g000009 Rmu_sc0007633.1_g000016 Rmu_sc0009227.1_g000008 Rmu_sc0009719.1_g000005 Rmu_sc0014303.1_g000002 Rmu_sc0017785.1_g000012
rosa_roxburghii	Rroxscaffold_1G00028540 Rroxscaffold_2G00109820 Rroxscaffold_7G00208170 Rroxscaffold_7G00208180
rosa_rugosa	Rorug05G0577900
rosa_samantha	Rh2AG393100 Rh2BG377300 Rh2CG379800 Rh2DG415700 Rh6AG096300 Rh6BG087500 Rh6CG083400 Rh6DG079200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	460
AccII	CGCG	1 cut(s)	523
AccIII	TCCGGA	1 cut(s)	477
AclWI	GGATC	1 cut(s)	432
AcuI	CTGAAG	1 cut(s)	95
AgsI	TTSAA	2 cut(s)	65, 413
AhlI	ACTAGT	1 cut(s)	455
AjiI	CACGTC	1 cut(s)	464
AjnI	CCWGG	1 cut(s)	233
AluBI	AGCT	4 cut(s)	165, 390, 549, 556
AluI	AGCT	4 cut(s)	165, 390, 549, 556
AlwI	GGATC	1 cut(s)	432
Aor13HI	TCCGGA	1 cut(s)	477
ApeKI	GCWGC	1 cut(s)	176
AspLEI	GCGC	3 cut(s)	181, 380, 525
AsuNHI	GCTAGC	1 cut(s)	161
BbvI	GCAGC	1 cut(s)	163
BccI	CCATC	2 cut(s)	391, 481
BciT130I	CCWGG	1 cut(s)	235
BcuI	ACTAGT	1 cut(s)	455
BfaI	CTAG	2 cut(s)	162, 456
BfmI	CTRYAG	1 cut(s)	557
BisI	GCNGC	1 cut(s)	177
BlpI	GCTNAGC	1 cut(s)	545
BlsI	GCNGC	1 cut(s)	178
Bme1390I	CCNGG	1 cut(s)	235
BmgBI	CACGTC	1 cut(s)	464
BmrFI	CCNGG	1 cut(s)	235
BmsI	GCATC	1 cut(s)	219
BmtI	GCTAGC	1 cut(s)	165
Bpu1102I	GCTNAGC	1 cut(s)	545
BsaJI	CCNNGG	3 cut(s)	233, 234, 346
BsaWI	WCCGGW	2 cut(s)	196, 477
Bse3DI	GCAATG	3 cut(s)	340, 358, 539
BseAI	TCCGGA	1 cut(s)	477
BseBI	CCWGG	1 cut(s)	235
BseDI	CCNNGG	3 cut(s)	233, 234, 346
BseGI	GGATG	1 cut(s)	229
BseMI	GCAATG	3 cut(s)	340, 358, 539
BseRI	GAGGAG	1 cut(s)	121
BseXI	GCAGC	1 cut(s)	163
Bsh1236I	CGCG	1 cut(s)	523
BsiSI	CCGG	2 cut(s)	197, 478
BslFI	GGGAC	1 cut(s)	505
BsmFI	GGGAC	1 cut(s)	505
BsmI	GAATGC	1 cut(s)	239
Bsp13I	TCCGGA	1 cut(s)	477
Bsp143I	GATC	1 cut(s)	424
Bsp1720I	GCTNAGC	1 cut(s)	545
Bsp19I	CCATGG	1 cut(s)	346
BspEI	TCCGGA	1 cut(s)	477
BspFNI	CGCG	1 cut(s)	523
BspHI	TCATGA	1 cut(s)	150
BspOI	GCTAGC	1 cut(s)	165
BspPI	GGATC	1 cut(s)	432
BsrDI	GCAATG	3 cut(s)	340, 358, 539
BssECI	CCNNGG	3 cut(s)	233, 234, 346
BssMI	GATC	1 cut(s)	424
BssT1I	CCWWGG	1 cut(s)	346
Bst2UI	CCWGG	1 cut(s)	235
BstC8I	GCNNGC	3 cut(s)	34, 163, 210
BstDEI	CTNAG	1 cut(s)	545
BstDSI	CCRYGG	1 cut(s)	346
BstF5I	GGATG	1 cut(s)	229
BstFNI	CGCG	1 cut(s)	523
BstHHI	GCGC	3 cut(s)	181, 380, 525
BstKTI	GATC	1 cut(s)	427
BstMBI	GATC	1 cut(s)	424
BstMWI	GCNNNNNNNGC	1 cut(s)	299
BstNI	CCWGG	1 cut(s)	235
BstSCI	CCNGG	1 cut(s)	233
BstSFI	CTRYAG	1 cut(s)	557
BstUI	CGCG	1 cut(s)	523
BstV1I	GCAGC	1 cut(s)	163
BtgI	CCRYGG	1 cut(s)	346
BtgZI	GCGATG	1 cut(s)	66
BtrI	CACGTC	1 cut(s)	464
BtsCI	GGATG	1 cut(s)	229
BtsI	GCAGTG	1 cut(s)	18
BtsIMutI	CAGTG	1 cut(s)	18
Cac8I	GCNNGC	3 cut(s)	34, 163, 210
CciI	TCATGA	1 cut(s)	150
CfoI	GCGC	3 cut(s)	181, 380, 525
CseI	GACGC	1 cut(s)	502
CspCI	CAANNNNNGTGG	2 cut(s)	304, 339
CviAII	CATG	3 cut(s)	151, 307, 347
CviJI	RGCY	9 cut(s)	113, 165, 247, 260, 302, 390, 474, 549, 556
CviKI_1	RGCY	9 cut(s)	113, 165, 247, 260, 302, 390, 474, 549, 556
DdeI	CTNAG	1 cut(s)	545
DpnI	GATC	1 cut(s)	426
DpnII	GATC	1 cut(s)	424
Eco130I	CCWWGG	1 cut(s)	346
Eco57I	CTGAAG	1 cut(s)	95
EcoRII	CCWGG	1 cut(s)	233
EcoT14I	CCWWGG	1 cut(s)	346
ErhI	CCWWGG	1 cut(s)	346
FaeI	CATG	3 cut(s)	154, 310, 350
FaqI	GGGAC	1 cut(s)	505
FatI	CATG	3 cut(s)	150, 306, 346
FblI	GTMKAC	1 cut(s)	460
Fnu4HI	GCNGC	1 cut(s)	177
FokI	GGATG	1 cut(s)	236
Fsp4HI	GCNGC	1 cut(s)	177
FspBI	CTAG	2 cut(s)	162, 456
GlaI	GCGC	3 cut(s)	180, 379, 524
GluI	GCNGC	1 cut(s)	177
HapII	CCGG	2 cut(s)	197, 478
HgaI	GACGC	1 cut(s)	502
HhaI	GCGC	3 cut(s)	181, 380, 525
Hin1II	CATG	3 cut(s)	154, 310, 350
Hin6I	GCGC	3 cut(s)	179, 378, 523
HinP1I	GCGC	3 cut(s)	179, 378, 523
HinfI	GANTC	4 cut(s)	61, 481, 518, 536
HpaII	CCGG	2 cut(s)	197, 478
Hpy166II	GTNNAC	1 cut(s)	461
Hpy188I	TCNGA	2 cut(s)	396, 486
Hpy188III	TCNNGA	5 cut(s)	65, 151, 251, 478, 509
Hpy8I	GTNNAC	1 cut(s)	461
HpyCH4IV	ACGT	2 cut(s)	204, 463
HpyCH4V	TGCA	3 cut(s)	26, 280, 293
HpyF10VI	GCNNNNNNNGC	1 cut(s)	299
HpyF3I	CTNAG	1 cut(s)	545
HpySE526I	ACGT	2 cut(s)	204, 463
Hsp92II	CATG	3 cut(s)	154, 310, 350
HspAI	GCGC	3 cut(s)	179, 378, 523
Kpn2I	TCCGGA	1 cut(s)	477
Kzo9I	GATC	1 cut(s)	424
LmnI	GCTCC	1 cut(s)	387
Lsp1109I	GCAGC	1 cut(s)	163
LweI	GCATC	1 cut(s)	219
MaeI	CTAG	2 cut(s)	162, 456
MaeII	ACGT	2 cut(s)	204, 463
MaeIII	GTNAC	1 cut(s)	451
MalI	GATC	1 cut(s)	426
MboI	GATC	1 cut(s)	424
MboII	GAAGA	3 cut(s)	139, 353, 425
MfeI	CAATTG	1 cut(s)	419
MluCI	AATT	3 cut(s)	262, 407, 419
MlyI	GAGTC	2 cut(s)	490, 530
MnlI	CCTC	3 cut(s)	99, 102, 431
MroI	TCCGGA	1 cut(s)	477
MslI	CAYNNNNRTG	2 cut(s)	345, 351
MspI	CCGG	2 cut(s)	197, 478
MspR9I	CCNGG	1 cut(s)	235
MunI	CAATTG	1 cut(s)	419
Mva1269I	GAATGC	1 cut(s)	239
MvaI	CCWGG	1 cut(s)	235
MvnI	CGCG	1 cut(s)	523
MwoI	GCNNNNNNNGC	1 cut(s)	299
NcoI	CCATGG	1 cut(s)	346
NdeII	GATC	1 cut(s)	424
NheI	GCTAGC	1 cut(s)	161
NlaIII	CATG	3 cut(s)	154, 310, 350
NmeAIII	GCCGAG	1 cut(s)	162
NmuCI	GTSAC	1 cut(s)	451
PagI	TCATGA	1 cut(s)	150
PasI	CCCWGGG	1 cut(s)	234
PctI	GAATGC	1 cut(s)	239
PfeI	GAWTC	2 cut(s)	61, 518
PkrI	GCNGC	1 cut(s)	178
PleI	GAGTC	2 cut(s)	489, 530
PpsI	GAGTC	2 cut(s)	489, 530
Psp6I	CCWGG	1 cut(s)	233
PspGI	CCWGG	1 cut(s)	233
RseI	CAYNNNNRTG	2 cut(s)	345, 351
SatI	GCNGC	1 cut(s)	177
Sau3AI	GATC	1 cut(s)	424
SchI	GAGTC	2 cut(s)	490, 530
ScrFI	CCNGG	1 cut(s)	235
SetI	ASST	9 cut(s)	167, 207, 321, 392, 466, 501, 506, 551, 558
SfaNI	GCATC	1 cut(s)	219
SfcI	CTRYAG	1 cut(s)	557
SmiMI	CAYNNNNRTG	2 cut(s)	345, 351
SpeI	ACTAGT	1 cut(s)	455
Sse9I	AATT	3 cut(s)	262, 407, 419
SspMI	CTAG	2 cut(s)	162, 456
StyD4I	CCNGG	1 cut(s)	233
StyI	CCWWGG	1 cut(s)	346
TaiI	ACGT	2 cut(s)	207, 466
TaqI	TCGA	1 cut(s)	131
TasI	AATT	3 cut(s)	262, 407, 419
TfiI	GAWTC	2 cut(s)	61, 518
TscAI	CASTG	1 cut(s)	18
TseFI	GTSAC	1 cut(s)	451
TseI	GCWGC	1 cut(s)	176
Tsp45I	GTSAC	1 cut(s)	451
TspDTI	ATGAA	2 cut(s)	139, 329
TspRI	CASTG	1 cut(s)	18
XmiI	GTMKAC	1 cut(s)	460
XspI	CTAG	2 cut(s)	162, 456

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.