Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003076.1

Orthogroup ID

OG0004841

Physical Location & Seq

Genomic Coordinates Forward (+)

88796 .. 89914

Gene Structure 1119 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003076.1_g000019.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 420 bp

atgtttgttttagaagatgaaaatggcaagaagttcgaaacgaagtatcttgttgaaaagataggactgagtggtggatggagagggttttcaattgctcacaagttgctggctggagatgtcttagtttttcatctagtcacagaatctaagttcaaggtttatgttattagatcaaatggcttaggtgaagtggaatgcgctcttggccttgtccaattagatgctgagatatgccgcctacatgatgcagagaggatggcggctcaatttgaacaacagttagaccgtgctaaaggaggaaaacgaaaagtgactagtagacaggaaacagctcggagtccgattgggacgtaccttacctttccggaaagggaatcgcgccagaaacaagactcatggctttgccatgagctgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

139

Amino Acids

15.81

Weight (kDa)

7.74

Isoelectric Point (pI)

45.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004841)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g06290 FvH4_2g06290 FvH4_2g06290
rosa_chinensis	RchiOBHm_Chr6g0256801 RchiOBHm_Chr7g0241311
rosa_laevigata	RLG00000014644
rosa_multiflora	Rmu_sc0000857.1_g000026 Rmu_sc0001070.1_g000027 Rmu_sc0001256.1_g000010 Rmu_sc0003076.1_g000019 Rmu_sc0004277.1_g000042 Rmu_sc0006763.1_g000019 Rmu_sc0007548.1_g000009 Rmu_sc0007633.1_g000016 Rmu_sc0009227.1_g000008 Rmu_sc0009719.1_g000005 Rmu_sc0014303.1_g000002 Rmu_sc0017785.1_g000012
rosa_roxburghii	Rroxscaffold_1G00028540 Rroxscaffold_2G00109820 Rroxscaffold_7G00208170 Rroxscaffold_7G00208180
rosa_rugosa	Rorug05G0577900
rosa_samantha	Rh2AG393100 Rh2BG377300 Rh2CG379800 Rh2DG415700 Rh6AG096300 Rh6BG087500 Rh6CG083400 Rh6DG079200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	322
AccII	CGCG	1 cut(s)	382
AccIII	TCCGGA	1 cut(s)	367
AciI	CCGC	2 cut(s)	238, 263
AfaI	GTAC	1 cut(s)	356
AgsI	TTSAA	4 cut(s)	56, 93, 157, 275
AhlI	ACTAGT	1 cut(s)	317
AjuI	GAANNNNNNNTTGG	2 cut(s)	189, 221
AluBI	AGCT	2 cut(s)	335, 415
AluI	AGCT	2 cut(s)	335, 415
Aor13HI	TCCGGA	1 cut(s)	367
AoxI	GGCC	1 cut(s)	208
AspLEI	GCGC	2 cut(s)	203, 384
AsuHPI	GGTGA	1 cut(s)	200
AsuII	TTCGAA	1 cut(s)	36
BccI	CCATC	2 cut(s)	72, 253
BcgI	CGANNNNNNTGC	2 cut(s)	16, 50
BcuI	ACTAGT	1 cut(s)	317
BfaI	CTAG	2 cut(s)	137, 318
BfmI	CTRYAG	1 cut(s)	416
BisI	GCNGC	2 cut(s)	238, 264
BlsI	GCNGC	2 cut(s)	239, 265
BmsI	GCATC	2 cut(s)	214, 238
BpmI	CTGGAG	1 cut(s)	135
Bpu10I	CCTNAGC	1 cut(s)	184
Bpu14I	TTCGAA	1 cut(s)	36
BsaWI	WCCGGW	1 cut(s)	367
BseAI	TCCGGA	1 cut(s)	367
BseGI	GGATG	2 cut(s)	83, 264
BseMII	CTCAG	2 cut(s)	59, 219
Bsh1236I	CGCG	1 cut(s)	382
BshFI	GGCC	1 cut(s)	210
BsiSI	CCGG	1 cut(s)	368
BslFI	GGGAC	1 cut(s)	364
BsmFI	GGGAC	1 cut(s)	364
BsmI	GAATGC	1 cut(s)	203
BsnI	GGCC	1 cut(s)	210
Bsp119I	TTCGAA	1 cut(s)	36
Bsp13I	TCCGGA	1 cut(s)	367
Bsp143I	GATC	1 cut(s)	173
BspACI	CCGC	2 cut(s)	238, 263
BspANI	GGCC	1 cut(s)	210
BspCNI	CTCAG	2 cut(s)	60, 220
BspEI	TCCGGA	1 cut(s)	367
BspFNI	CGCG	1 cut(s)	382
BspT104I	TTCGAA	1 cut(s)	36
BssMI	GATC	1 cut(s)	173
Bst4CI	ACNGT	2 cut(s)	282, 290
BstBI	TTCGAA	1 cut(s)	36
BstC8I	GCNNGC	1 cut(s)	111
BstDEI	CTNAG	5 cut(s)	68, 124, 150, 184, 228
BstF5I	GGATG	2 cut(s)	83, 264
BstFNI	CGCG	1 cut(s)	382
BstHHI	GCGC	2 cut(s)	203, 384
BstKTI	GATC	1 cut(s)	176
BstMBI	GATC	1 cut(s)	173
BstMWI	GCNNNNNNNGC	1 cut(s)	207
BstSFI	CTRYAG	1 cut(s)	416
BstUI	CGCG	1 cut(s)	382
BsuRI	GGCC	1 cut(s)	210
BtsCI	GGATG	2 cut(s)	83, 264
Cac8I	GCNNGC	1 cut(s)	111
CfoI	GCGC	2 cut(s)	203, 384
Csp6I	GTAC	1 cut(s)	355
CviAII	CATG	3 cut(s)	245, 399, 410
CviJI	RGCY	7 cut(s)	113, 183, 210, 266, 335, 403, 415
CviKI_1	RGCY	7 cut(s)	113, 183, 210, 266, 335, 403, 415
CviQI	GTAC	1 cut(s)	355
DdeI	CTNAG	5 cut(s)	68, 124, 150, 184, 228
DpnI	GATC	1 cut(s)	175
DpnII	GATC	1 cut(s)	173
FaeI	CATG	3 cut(s)	248, 402, 413
FaiI	YATR	5 cut(s)	165, 235, 246, 400, 411
FaqI	GGGAC	1 cut(s)	364
FatI	CATG	3 cut(s)	244, 398, 409
FblI	GTMKAC	1 cut(s)	322
Fnu4HI	GCNGC	2 cut(s)	238, 264
FokI	GGATG	2 cut(s)	90, 271
Fsp4HI	GCNGC	2 cut(s)	238, 264
FspBI	CTAG	2 cut(s)	137, 318
GlaI	GCGC	2 cut(s)	202, 383
GluI	GCNGC	2 cut(s)	238, 264
GsuI	CTGGAG	1 cut(s)	135
HaeIII	GGCC	1 cut(s)	210
HapII	CCGG	1 cut(s)	368
HhaI	GCGC	2 cut(s)	203, 384
Hin1II	CATG	3 cut(s)	248, 402, 413
Hin6I	GCGC	2 cut(s)	201, 382
HinP1I	GCGC	2 cut(s)	201, 382
HinfI	GANTC	4 cut(s)	146, 340, 377, 395
HpaII	CCGG	1 cut(s)	368
HphI	GGTGA	1 cut(s)	200
Hpy166II	GTNNAC	1 cut(s)	323
Hpy188I	TCNGA	2 cut(s)	339, 345
Hpy188III	TCNNGA	1 cut(s)	368
Hpy8I	GTNNAC	1 cut(s)	323
HpyCH4III	ACNGT	2 cut(s)	282, 290
HpyCH4IV	ACGT	1 cut(s)	353
HpyCH4V	TGCA	1 cut(s)	251
HpyF10VI	GCNNNNNNNGC	1 cut(s)	207
HpyF3I	CTNAG	5 cut(s)	68, 124, 150, 184, 228
HpySE526I	ACGT	1 cut(s)	353
Hsp92II	CATG	3 cut(s)	248, 402, 413
HspAI	GCGC	2 cut(s)	201, 382
Kpn2I	TCCGGA	1 cut(s)	367
Kzo9I	GATC	1 cut(s)	173
LpnPI	CCDG	5 cut(s)	95, 99, 311, 381, 398
LweI	GCATC	2 cut(s)	214, 238
MaeI	CTAG	2 cut(s)	137, 318
MaeII	ACGT	1 cut(s)	353
MaeIII	GTNAC	2 cut(s)	139, 313
MalI	GATC	1 cut(s)	175
MboI	GATC	1 cut(s)	173
MboII	GAAGA	1 cut(s)	26
MfeI	CAATTG	1 cut(s)	93
MluCI	AATT	3 cut(s)	93, 218, 269
MlyI	GAGTC	2 cut(s)	349, 389
MnlI	CCTC	3 cut(s)	77, 249, 293
MroI	TCCGGA	1 cut(s)	367
MspI	CCGG	1 cut(s)	368
MunI	CAATTG	1 cut(s)	93
Mva1269I	GAATGC	1 cut(s)	203
MvnI	CGCG	1 cut(s)	382
MwoI	GCNNNNNNNGC	1 cut(s)	207
NdeII	GATC	1 cut(s)	173
NlaIII	CATG	3 cut(s)	248, 402, 413
NmuCI	GTSAC	2 cut(s)	139, 313
NspV	TTCGAA	1 cut(s)	36
PctI	GAATGC	1 cut(s)	203
PfeI	GAWTC	2 cut(s)	146, 377
PkrI	GCNGC	2 cut(s)	239, 265
PleI	GAGTC	2 cut(s)	348, 389
PpsI	GAGTC	2 cut(s)	348, 389
RsaI	GTAC	1 cut(s)	356
RsaNI	GTAC	1 cut(s)	355
SatI	GCNGC	2 cut(s)	238, 264
Sau3AI	GATC	1 cut(s)	173
SchI	GAGTC	2 cut(s)	349, 389
SetI	ASST	7 cut(s)	162, 190, 337, 356, 360, 365, 417
SfaNI	GCATC	2 cut(s)	214, 238
SfcI	CTRYAG	1 cut(s)	416
SfuI	TTCGAA	1 cut(s)	36
SpeI	ACTAGT	1 cut(s)	317
Sse9I	AATT	3 cut(s)	93, 218, 269
SsiI	CCGC	2 cut(s)	238, 263
SspMI	CTAG	2 cut(s)	137, 318
TaaI	ACNGT	2 cut(s)	282, 290
TaiI	ACGT	1 cut(s)	356
TaqI	TCGA	1 cut(s)	36
TasI	AATT	3 cut(s)	93, 218, 269
TauI	GCSGC	2 cut(s)	240, 266
TfiI	GAWTC	2 cut(s)	146, 377
TseFI	GTSAC	2 cut(s)	139, 313
Tsp45I	GTSAC	2 cut(s)	139, 313
TspDTI	ATGAA	2 cut(s)	33, 122
XmiI	GTMKAC	1 cut(s)	322
XspI	CTAG	2 cut(s)	137, 318

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.