Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006763.1

Orthogroup ID

OG0004841

Physical Location & Seq

Genomic Coordinates Forward (+)

101882 .. 102550

Gene Structure 669 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006763.1_g000019.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 372 bp

atgcgcactctgctcagtaagttatttgcaacaaagtactttcccggaggtacttggggtctggcaactgcagggccaaagccgtcgttcatttgtaaagatgagaattacaatgtgaaatcaggatattggctgtgcaagaagtgggggtctggaactggaagttgtggtgagaagaatgagtttaactctattaatgatgcaaaacggatggcaacccaatttgaagaacaattagatcgtgctaaaggaggaaaacgaaaagtgactagtagacaggaaacaactcggagtccgattggaacgtaccttacctttccggaatgggaatcgcgccaaaaacaagactcattgcttagctatgagctgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

123

Amino Acids

13.96

Weight (kDa)

9.43

Isoelectric Point (pI)

38.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004841)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g06290 FvH4_2g06290 FvH4_2g06290
rosa_chinensis	RchiOBHm_Chr6g0256801 RchiOBHm_Chr7g0241311
rosa_laevigata	RLG00000014644
rosa_multiflora	Rmu_sc0000857.1_g000026 Rmu_sc0001070.1_g000027 Rmu_sc0001256.1_g000010 Rmu_sc0003076.1_g000019 Rmu_sc0004277.1_g000042 Rmu_sc0006763.1_g000019 Rmu_sc0007548.1_g000009 Rmu_sc0007633.1_g000016 Rmu_sc0009227.1_g000008 Rmu_sc0009719.1_g000005 Rmu_sc0014303.1_g000002 Rmu_sc0017785.1_g000012
rosa_roxburghii	Rroxscaffold_1G00028540 Rroxscaffold_2G00109820 Rroxscaffold_7G00208170 Rroxscaffold_7G00208180
rosa_rugosa	Rorug05G0577900
rosa_samantha	Rh2AG393100 Rh2BG377300 Rh2CG379800 Rh2DG415700 Rh6AG096300 Rh6BG087500 Rh6CG083400 Rh6DG079200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	5
AccI	GTMKAC	1 cut(s)	274
AccII	CGCG	1 cut(s)	334
AccIII	TCCGGA	1 cut(s)	319
AfaI	GTAC	3 cut(s)	38, 52, 308
AgsI	TTSAA	1 cut(s)	227
AhlI	ACTAGT	1 cut(s)	269
AluBI	AGCT	2 cut(s)	360, 367
AluI	AGCT	2 cut(s)	360, 367
Aor13HI	TCCGGA	1 cut(s)	319
AoxI	GGCC	1 cut(s)	74
AseI	ATTAAT	1 cut(s)	195
AspLEI	GCGC	2 cut(s)	6, 336
AspS9I	GGNCC	1 cut(s)	74
AsuC2I	CCSGG	1 cut(s)	45
AsuHPI	GGTGA	1 cut(s)	182
BccI	CCATC	1 cut(s)	205
BceAI	ACGGC	1 cut(s)	67
BcnI	CCSGG	1 cut(s)	45
BcuI	ACTAGT	1 cut(s)	269
BfaI	CTAG	1 cut(s)	270
BfmI	CTRYAG	2 cut(s)	69, 368
BlpI	GCTNAGC	1 cut(s)	356
BmcAI	AGTACT	1 cut(s)	38
Bme1390I	CCNGG	1 cut(s)	45
BmgT120I	GGNCC	1 cut(s)	74
BmrFI	CCNGG	1 cut(s)	45
BmsI	GCATC	1 cut(s)	190
BplI	GAGNNNNNCTC	2 cut(s)	173, 205
Bpu1102I	GCTNAGC	1 cut(s)	356
BpuMI	CCSGG	1 cut(s)	45
BsaWI	WCCGGW	1 cut(s)	319
Bse1I	ACTGG	1 cut(s)	163
Bse3DI	GCAATG	1 cut(s)	350
BseAI	TCCGGA	1 cut(s)	319
BseGI	GGATG	1 cut(s)	216
BseMI	GCAATG	1 cut(s)	350
BseMII	CTCAG	1 cut(s)	28
BseNI	ACTGG	1 cut(s)	163
Bsh1236I	CGCG	1 cut(s)	334
BshFI	GGCC	1 cut(s)	76
BsiSI	CCGG	2 cut(s)	45, 320
BsnI	GGCC	1 cut(s)	76
Bsp13I	TCCGGA	1 cut(s)	319
Bsp143I	GATC	1 cut(s)	238
Bsp1720I	GCTNAGC	1 cut(s)	356
BspANI	GGCC	1 cut(s)	76
BspCNI	CTCAG	1 cut(s)	27
BspEI	TCCGGA	1 cut(s)	319
BspFNI	CGCG	1 cut(s)	334
BspMAI	CTGCAG	1 cut(s)	73
BsrDI	GCAATG	1 cut(s)	350
BsrI	ACTGG	1 cut(s)	163
BssMI	GATC	1 cut(s)	238
BstDEI	CTNAG	2 cut(s)	14, 356
BstF5I	GGATG	1 cut(s)	216
BstFNI	CGCG	1 cut(s)	334
BstHHI	GCGC	2 cut(s)	6, 336
BstKTI	GATC	1 cut(s)	241
BstMBI	GATC	1 cut(s)	238
BstMWI	GCNNNNNNNGC	1 cut(s)	10
BstSCI	CCNGG	1 cut(s)	43
BstSFI	CTRYAG	2 cut(s)	69, 368
BstUI	CGCG	1 cut(s)	334
BsuRI	GGCC	1 cut(s)	76
BtsCI	GGATG	1 cut(s)	216
CfoI	GCGC	2 cut(s)	6, 336
Cfr13I	GGNCC	1 cut(s)	74
Csp6I	GTAC	3 cut(s)	37, 51, 307
CviJI	RGCY	5 cut(s)	76, 82, 133, 360, 367
CviKI_1	RGCY	5 cut(s)	76, 82, 133, 360, 367
CviQI	GTAC	3 cut(s)	37, 51, 307
DdeI	CTNAG	2 cut(s)	14, 356
DpnI	GATC	1 cut(s)	240
DpnII	GATC	1 cut(s)	238
FaiI	YATR	1 cut(s)	363
FblI	GTMKAC	1 cut(s)	274
FokI	GGATG	1 cut(s)	223
FspAI	RTGCGCAY	1 cut(s)	5
FspBI	CTAG	1 cut(s)	270
FspI	TGCGCA	1 cut(s)	5
GlaI	GCGC	2 cut(s)	5, 335
HaeIII	GGCC	1 cut(s)	76
HapII	CCGG	2 cut(s)	45, 320
HhaI	GCGC	2 cut(s)	6, 336
Hin6I	GCGC	2 cut(s)	4, 334
HinP1I	GCGC	2 cut(s)	4, 334
HinfI	GANTC	3 cut(s)	292, 329, 347
HpaII	CCGG	2 cut(s)	45, 320
HphI	GGTGA	1 cut(s)	182
Hpy166II	GTNNAC	1 cut(s)	275
Hpy188I	TCNGA	2 cut(s)	291, 297
Hpy188III	TCNNGA	3 cut(s)	123, 153, 320
Hpy8I	GTNNAC	1 cut(s)	275
Hpy99I	CGWCG	1 cut(s)	88
HpyCH4IV	ACGT	1 cut(s)	305
HpyCH4V	TGCA	4 cut(s)	29, 71, 138, 203
HpyF10VI	GCNNNNNNNGC	1 cut(s)	10
HpyF3I	CTNAG	2 cut(s)	14, 356
HpySE526I	ACGT	1 cut(s)	305
HspAI	GCGC	2 cut(s)	4, 334
Kpn2I	TCCGGA	1 cut(s)	319
Kzo9I	GATC	1 cut(s)	238
LpnPI	CCDG	8 cut(s)	47, 57, 58, 108, 138, 144, 263, 333
LweI	GCATC	1 cut(s)	190
MaeI	CTAG	1 cut(s)	270
MaeII	ACGT	1 cut(s)	305
MaeIII	GTNAC	1 cut(s)	265
MalI	GATC	1 cut(s)	240
MboI	GATC	1 cut(s)	238
MboII	GAAGA	2 cut(s)	187, 239
MluCI	AATT	3 cut(s)	106, 221, 233
MlyI	GAGTC	2 cut(s)	301, 341
MnlI	CCTC	2 cut(s)	41, 245
MroI	TCCGGA	1 cut(s)	319
MseI	TTAA	2 cut(s)	186, 195
MspI	CCGG	2 cut(s)	45, 320
MspR9I	CCNGG	1 cut(s)	45
MvnI	CGCG	1 cut(s)	334
MwoI	GCNNNNNNNGC	1 cut(s)	10
NciI	CCSGG	1 cut(s)	45
NdeII	GATC	1 cut(s)	238
NmuCI	GTSAC	1 cut(s)	265
NsbI	TGCGCA	1 cut(s)	5
PfeI	GAWTC	1 cut(s)	329
PfoI	TCCNGGA	1 cut(s)	43
PleI	GAGTC	2 cut(s)	300, 341
PpsI	GAGTC	2 cut(s)	300, 341
PshBI	ATTAAT	1 cut(s)	195
PspPI	GGNCC	1 cut(s)	74
PsrI	GAACNNNNNNTAC	2 cut(s)	295, 327
PstI	CTGCAG	1 cut(s)	73
RsaI	GTAC	3 cut(s)	38, 52, 308
RsaNI	GTAC	3 cut(s)	37, 51, 307
SaqAI	TTAA	2 cut(s)	186, 195
Sau3AI	GATC	1 cut(s)	238
Sau96I	GGNCC	1 cut(s)	74
ScaI	AGTACT	1 cut(s)	38
SchI	GAGTC	2 cut(s)	301, 341
ScrFI	CCNGG	1 cut(s)	45
SetI	ASST	6 cut(s)	52, 308, 312, 317, 362, 369
SfaNI	GCATC	1 cut(s)	190
SfcI	CTRYAG	2 cut(s)	69, 368
SpeI	ACTAGT	1 cut(s)	269
Sse9I	AATT	3 cut(s)	106, 221, 233
SspMI	CTAG	1 cut(s)	270
StyD4I	CCNGG	1 cut(s)	43
TaiI	ACGT	1 cut(s)	308
TasI	AATT	3 cut(s)	106, 221, 233
TatI	WGTACW	1 cut(s)	36
TfiI	GAWTC	1 cut(s)	329
Tru1I	TTAA	2 cut(s)	186, 195
Tru9I	TTAA	2 cut(s)	186, 195
TseFI	GTSAC	1 cut(s)	265
Tsp45I	GTSAC	1 cut(s)	265
TspDTI	ATGAA	1 cut(s)	79
TspGWI	ACGGA	1 cut(s)	223
VspI	ATTAAT	1 cut(s)	195
XmiI	GTMKAC	1 cut(s)	274
XspI	CTAG	1 cut(s)	270
ZrmI	AGTACT	1 cut(s)	38

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.