Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009719.1

Orthogroup ID

OG0004841

Physical Location & Seq

Genomic Coordinates Reverse (-)

6068 .. 6713

Gene Structure 646 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009719.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

atggcggaaacagacctacccgaagatattatagtgattatcctctcttggcttcccgtgaaatccttgatccgattcacctgcgtttcgaaacgctttcgtttcattatattgtccgaccctatattcgccaaatctcaatacaaagcagcttgtgagcagaaatccctaactcacagactcctcctcctctcgtcacatgtcacccctcgtctcgaattcctagacttggaaacgccgtcgtttggggacacttattcatttagaagtctgaatttccgttgccagaaagagggcggttatgtcaggctactggggaactaccagaccctggttttacagccaaaaatcctgatttcttgttctccctctactattgatgcagaacaaatggcagcccaatttgaagaacaattggatcgtgctaaaggaggaaaacgaaaagtgactagtagacgcgaaacgggctttcggagtccgattgggacgcaccttacctttccggaaagggaatcgcgccagaaatcaaactcgtcgctttgccacgacctgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like FBA_1

Protein Analysis

184

Amino Acids

21.03

Weight (kDa)

9.18

Isoelectric Point (pI)

54.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004841)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g06290 FvH4_2g06290 FvH4_2g06290
rosa_chinensis	RchiOBHm_Chr6g0256801 RchiOBHm_Chr7g0241311
rosa_laevigata	RLG00000014644
rosa_multiflora	Rmu_sc0000857.1_g000026 Rmu_sc0001070.1_g000027 Rmu_sc0001256.1_g000010 Rmu_sc0003076.1_g000019 Rmu_sc0004277.1_g000042 Rmu_sc0006763.1_g000019 Rmu_sc0007548.1_g000009 Rmu_sc0007633.1_g000016 Rmu_sc0009227.1_g000008 Rmu_sc0009719.1_g000005 Rmu_sc0014303.1_g000002 Rmu_sc0017785.1_g000012
rosa_roxburghii	Rroxscaffold_1G00028540 Rroxscaffold_2G00109820 Rroxscaffold_7G00208170 Rroxscaffold_7G00208180
rosa_rugosa	Rorug05G0577900
rosa_samantha	Rh2AG393100 Rh2BG377300 Rh2CG379800 Rh2DG415700 Rh6AG096300 Rh6BG087500 Rh6CG083400 Rh6DG079200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	89
Acc36I	ACCTGC	1 cut(s)	89
AccB7I	CCANNNNNTGG	1 cut(s)	331
AccI	GTMKAC	1 cut(s)	454
AccII	CGCG	2 cut(s)	459, 517
AccIII	TCCGGA	1 cut(s)	502
AciI	CCGC	2 cut(s)	5, 297
AclWI	GGATC	2 cut(s)	64, 426
AcsI	RAATTY	2 cut(s)	218, 274
AfiI	CCNNNNNNNGG	4 cut(s)	229, 245, 292, 331
AflIII	ACRYGT	1 cut(s)	199
AgsI	TTSAA	1 cut(s)	407
AhlI	ACTAGT	1 cut(s)	449
AjnI	CCWGG	1 cut(s)	330
AluBI	AGCT	1 cut(s)	152
AluI	AGCT	1 cut(s)	152
Alw26I	GTCTC	1 cut(s)	218
AlwI	GGATC	2 cut(s)	64, 426
AlwNI	CAGNNNCTG	1 cut(s)	331
Aor13HI	TCCGGA	1 cut(s)	502
ApeKI	GCWGC	2 cut(s)	149, 395
ApoI	RAATTY	2 cut(s)	218, 274
ArsI	GACNNNNNNTTYG	2 cut(s)	110, 142
AspLEI	GCGC	1 cut(s)	519
AsuHPI	GGTGA	2 cut(s)	70, 196
AsuII	TTCGAA	1 cut(s)	89
BbvI	GCAGC	2 cut(s)	161, 407
BceAI	ACGGC	1 cut(s)	223
BcgI	CGANNNNNNTGC	2 cut(s)	63, 97
BciT130I	CCWGG	1 cut(s)	332
BcoDI	GTCTC	1 cut(s)	218
BcuI	ACTAGT	1 cut(s)	449
BfaI	CTAG	2 cut(s)	224, 450
BfuAI	ACCTGC	1 cut(s)	89
BisI	GCNGC	2 cut(s)	150, 396
BlsI	GCNGC	2 cut(s)	151, 397
Bme1390I	CCNGG	1 cut(s)	332
BmrFI	CCNGG	1 cut(s)	332
BmrI	ACTGGG	1 cut(s)	323
BmsI	GCATC	1 cut(s)	370
BmuI	ACTGGG	1 cut(s)	323
Bpu14I	TTCGAA	1 cut(s)	89
BsaJI	CCNNGG	1 cut(s)	330
BsaWI	WCCGGW	1 cut(s)	502
BsaXI	ACNNNNNCTCC	2 cut(s)	171, 201
Bsc4I	CCNNNNNNNGG	4 cut(s)	229, 245, 292, 331
Bse1I	ACTGG	1 cut(s)	318
BseAI	TCCGGA	1 cut(s)	502
BseBI	CCWGG	1 cut(s)	332
BseDI	CCNNGG	1 cut(s)	330
BseLI	CCNNNNNNNGG	4 cut(s)	229, 245, 292, 331
BseNI	ACTGG	1 cut(s)	318
BseRI	GAGGAG	3 cut(s)	173, 176, 179
BseXI	GCAGC	2 cut(s)	161, 407
Bsh1236I	CGCG	2 cut(s)	459, 517
BsiSI	CCGG	1 cut(s)	503
BslFI	GGGAC	2 cut(s)	263, 499
BslI	CCNNNNNNNGG	4 cut(s)	229, 245, 292, 331
BsmAI	GTCTC	1 cut(s)	218
BsmBI	CGTCTC	1 cut(s)	218
BsmFI	GGGAC	2 cut(s)	263, 499
Bsp119I	TTCGAA	1 cut(s)	89
Bsp13I	TCCGGA	1 cut(s)	502
Bsp143I	GATC	2 cut(s)	69, 418
BspACI	CCGC	2 cut(s)	5, 297
BspEI	TCCGGA	1 cut(s)	502
BspFNI	CGCG	2 cut(s)	459, 517
BspMI	ACCTGC	1 cut(s)	89
BspPI	GGATC	2 cut(s)	64, 426
BspT104I	TTCGAA	1 cut(s)	89
BsrI	ACTGG	1 cut(s)	318
BssECI	CCNNGG	1 cut(s)	330
BssMI	GATC	2 cut(s)	69, 418
Bst2UI	CCWGG	1 cut(s)	332
BstBI	TTCGAA	1 cut(s)	89
BstFNI	CGCG	2 cut(s)	459, 517
BstHHI	GCGC	1 cut(s)	519
BstKTI	GATC	2 cut(s)	72, 421
BstMAI	GTCTC	1 cut(s)	218
BstMBI	GATC	2 cut(s)	69, 418
BstMWI	GCNNNNNNNGC	1 cut(s)	465
BstNI	CCWGG	1 cut(s)	332
BstNSI	RCATGY	1 cut(s)	203
BstSCI	CCNGG	1 cut(s)	330
BstUI	CGCG	2 cut(s)	459, 517
BstV1I	GCAGC	2 cut(s)	161, 407
BveI	ACCTGC	1 cut(s)	89
CaiI	CAGNNNCTG	1 cut(s)	331
CfoI	GCGC	1 cut(s)	519
CseI	GACGC	2 cut(s)	465, 496
CviAII	CATG	1 cut(s)	200
CviJI	RGCY	6 cut(s)	52, 152, 310, 343, 398, 468
CviKI_1	RGCY	6 cut(s)	52, 152, 310, 343, 398, 468
DpnI	GATC	2 cut(s)	71, 420
DpnII	GATC	2 cut(s)	69, 418
EciI	GGCGGA	1 cut(s)	20
EcoRI	GAATTC	1 cut(s)	218
EcoRII	CCWGG	1 cut(s)	330
Esp3I	CGTCTC	1 cut(s)	218
FaeI	CATG	1 cut(s)	203
FaiI	YATR	5 cut(s)	32, 110, 125, 201, 303
FaqI	GGGAC	2 cut(s)	263, 499
FatI	CATG	1 cut(s)	199
FblI	GTMKAC	1 cut(s)	454
Fnu4HI	GCNGC	2 cut(s)	150, 396
Fsp4HI	GCNGC	2 cut(s)	150, 396
FspBI	CTAG	2 cut(s)	224, 450
GlaI	GCGC	1 cut(s)	518
GluI	GCNGC	2 cut(s)	150, 396
HapII	CCGG	1 cut(s)	503
HgaI	GACGC	2 cut(s)	465, 496
HhaI	GCGC	1 cut(s)	519
Hin1II	CATG	1 cut(s)	203
Hin6I	GCGC	1 cut(s)	517
HinP1I	GCGC	1 cut(s)	517
HinfI	GANTC	4 cut(s)	75, 180, 475, 512
HpaII	CCGG	1 cut(s)	503
HphI	GGTGA	2 cut(s)	70, 196
Hpy166II	GTNNAC	1 cut(s)	455
Hpy188I	TCNGA	5 cut(s)	74, 118, 273, 474, 480
Hpy188III	TCNNGA	3 cut(s)	215, 352, 503
Hpy8I	GTNNAC	1 cut(s)	455
Hpy99I	CGWCG	2 cut(s)	244, 538
HpyCH4V	TGCA	1 cut(s)	383
HpyF10VI	GCNNNNNNNGC	1 cut(s)	465
Hsp92II	CATG	1 cut(s)	203
HspAI	GCGC	1 cut(s)	517
Kpn2I	TCCGGA	1 cut(s)	502
Kzo9I	GATC	2 cut(s)	69, 418
Lsp1109I	GCAGC	2 cut(s)	161, 407
LweI	GCATC	1 cut(s)	370
MaeI	CTAG	2 cut(s)	224, 450
MaeIII	GTNAC	3 cut(s)	195, 202, 445
MalI	GATC	2 cut(s)	71, 420
MboI	GATC	2 cut(s)	69, 418
MboII	GAAGA	2 cut(s)	35, 419
MfeI	CAATTG	1 cut(s)	413
MluCI	AATT	4 cut(s)	218, 274, 401, 413
MlyI	GAGTC	2 cut(s)	174, 484
MmeI	TCCRAC	1 cut(s)	141
MnlI	CCTC	8 cut(s)	53, 194, 197, 200, 219, 286, 379, 425
MroI	TCCGGA	1 cut(s)	502
MspI	CCGG	1 cut(s)	503
MspR9I	CCNGG	1 cut(s)	332
MunI	CAATTG	1 cut(s)	413
MvaI	CCWGG	1 cut(s)	332
MvnI	CGCG	2 cut(s)	459, 517
MwoI	GCNNNNNNNGC	1 cut(s)	465
NdeII	GATC	2 cut(s)	69, 418
NlaIII	CATG	1 cut(s)	203
NmuCI	GTSAC	3 cut(s)	195, 202, 445
NspI	RCATGY	1 cut(s)	203
NspV	TTCGAA	1 cut(s)	89
PaqCI	CACCTGC	1 cut(s)	89
PciI	ACATGT	1 cut(s)	199
PfeI	GAWTC	2 cut(s)	75, 512
PflMI	CCANNNNNTGG	1 cut(s)	331
PkrI	GCNGC	2 cut(s)	151, 397
PleI	GAGTC	2 cut(s)	174, 483
PpsI	GAGTC	2 cut(s)	174, 483
PscI	ACATGT	1 cut(s)	199
Psp6I	CCWGG	1 cut(s)	330
PspGI	CCWGG	1 cut(s)	330
PstNI	CAGNNNCTG	1 cut(s)	331
SatI	GCNGC	2 cut(s)	150, 396
Sau3AI	GATC	2 cut(s)	69, 418
SchI	GAGTC	2 cut(s)	174, 484
ScrFI	CCNGG	1 cut(s)	332
SetI	ASST	6 cut(s)	18, 83, 154, 495, 500, 552
SfaNI	GCATC	1 cut(s)	370
SfuI	TTCGAA	1 cut(s)	89
SpeI	ACTAGT	1 cut(s)	449
Sse9I	AATT	4 cut(s)	218, 274, 401, 413
SsiI	CCGC	2 cut(s)	5, 297
SspMI	CTAG	2 cut(s)	224, 450
StyD4I	CCNGG	1 cut(s)	330
TaqI	TCGA	2 cut(s)	89, 216
TasI	AATT	4 cut(s)	218, 274, 401, 413
TfiI	GAWTC	2 cut(s)	75, 512
TseFI	GTSAC	3 cut(s)	195, 202, 445
TseI	GCWGC	2 cut(s)	149, 395
Tsp45I	GTSAC	3 cut(s)	195, 202, 445
TspDTI	ATGAA	2 cut(s)	94, 249
TspGWI	ACGGA	1 cut(s)	269
Van91I	CCANNNNNTGG	1 cut(s)	331
XapI	RAATTY	2 cut(s)	218, 274
XceI	RCATGY	1 cut(s)	203
XmiI	GTMKAC	1 cut(s)	454
XspI	CTAG	2 cut(s)	224, 450

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.