Rh6DG079200

B3 domain-containing protein Os01g0234100-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0004841
Physical Location & Seq
Reverse (-)
9018598 .. 9021690
3093 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG079200.1

Sequence Viewer

Length: 606 bp
ATGGCTATTGTAAAAGAACAGAAACAGAGCTCCAAGAATAAGAGGGCAAGATCATCAAACAATGAAGAAAAGCACACGATTAGAACCAATGTGATCAATGTTGATTCAGTGAAGTCTGATAGTAGCAAACAAAAGAAATTTAAGAGAGCCACAGAAGAAAGTTTATATGAGACTTCTGAAGCTCAGTTTTCTGTTCTCGAAAGAGCAAATGAGGTTGCAGCAAACCTAGATCCTCAGTTTCCTAGCATGGTCAAAGTTATGTTGCCATCACATGTCTCAGGAGGATTCTGGCTTGGTCTTTCTAAAACATTCTGCATTAAGCATTTGCCAAAGCAAGACACAATGTTTGTTTTAGAAGATGAAAATGGCAAGAAGTTCGAAACGAAGTATCTTGTTGAAAAGATAGGACTGAGTGGTGGATGGAGAGGGTTTTCAATTGCTCACAAGTTGCTGGCTGGAGATGTCTTAGTTTTTCATCTAGTCACAGAATCTAAGTTCAAGGTTTATGTTATTAGATCAAATGGCTTAGGTGAAGTGGAATGCGCTCTTGGCCTTGTCCAATTAGATGCTGACATTCGACCAGTAGATTCTGGTAAGTTGTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B3

Protein Analysis

201

Amino Acids

22.51

Weight (kDa)

9.11

Isoelectric Point (pI)

41.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B3 PF02362 84 - 173 5.8e-17 B3 DNA binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 224
AcsI RAATTY 1 cut(s) 137
AcuI CTGAAG 1 cut(s) 198
AflIII ACRYGT 1 cut(s) 271
AgsI TTSAA 3 cut(s) 398, 435, 499
AjuI GAANNNNNNNTTGG 2 cut(s) 531, 563
AluBI AGCT 2 cut(s) 30, 182
AluI AGCT 2 cut(s) 30, 182
Alw21I GWGCWC 1 cut(s) 32
Alw26I GTCTC 2 cut(s) 164, 280
AlwI GGATC 1 cut(s) 224
AoxI GGCC 1 cut(s) 550
ApeKI GCWGC 1 cut(s) 218
ApoI RAATTY 1 cut(s) 137
ArsI GACNNNNNNTTYG 2 cut(s) 329, 361
AspLEI GCGC 1 cut(s) 545
AsuHPI GGTGA 1 cut(s) 542
AsuII TTCGAA 1 cut(s) 378
BanII GRGCYC 1 cut(s) 32
Bbv12I GWGCWC 1 cut(s) 32
BbvI GCAGC 1 cut(s) 230
BccI CCATC 2 cut(s) 274, 414
BcgI CGANNNNNNTGC 2 cut(s) 358, 392
BclI TGATCA 1 cut(s) 93
BcoDI GTCTC 2 cut(s) 164, 280
BfaI CTAG 3 cut(s) 227, 243, 479
BisI GCNGC 1 cut(s) 219
BlsI GCNGC 1 cut(s) 220
BmsI GCATC 1 cut(s) 556
BpmI CTGGAG 1 cut(s) 477
Bpu10I CCTNAGC 1 cut(s) 526
Bpu14I TTCGAA 1 cut(s) 378
Bse1I ACTGG 1 cut(s) 581
BseGI GGATG 1 cut(s) 425
BseMII CTCAG 4 cut(s) 197, 248, 291, 401
BseNI ACTGG 1 cut(s) 581
BseXI GCAGC 1 cut(s) 230
BshFI GGCC 1 cut(s) 552
BsiHKAI GWGCWC 1 cut(s) 32
BsmAI GTCTC 2 cut(s) 164, 280
BsmI GAATGC 1 cut(s) 545
BsnI GGCC 1 cut(s) 552
Bsp119I TTCGAA 1 cut(s) 378
Bsp1286I GDGCHC 1 cut(s) 32
Bsp143I GATC 4 cut(s) 50, 93, 229, 515
BspANI GGCC 1 cut(s) 552
BspCNI CTCAG 4 cut(s) 196, 247, 290, 402
BspPI GGATC 1 cut(s) 224
BspT104I TTCGAA 1 cut(s) 378
BsrI ACTGG 1 cut(s) 581
BssMI GATC 4 cut(s) 50, 93, 229, 515
BstBI TTCGAA 1 cut(s) 378
BstC8I GCNNGC 1 cut(s) 453
BstDEI CTNAG 7 cut(s) 183, 234, 277, 410, 466, 492, 526
BstF5I GGATG 1 cut(s) 425
BstHHI GCGC 1 cut(s) 545
BstKTI GATC 4 cut(s) 53, 96, 232, 518
BstMAI GTCTC 2 cut(s) 164, 280
BstMBI GATC 4 cut(s) 50, 93, 229, 515
BstMWI GCNNNNNNNGC 1 cut(s) 549
BstNSI RCATGY 1 cut(s) 275
BstV1I GCAGC 1 cut(s) 230
BstX2I RGATCY 1 cut(s) 229
BstYI RGATCY 1 cut(s) 229
BsuRI GGCC 1 cut(s) 552
BtsCI GGATG 1 cut(s) 425
BtsIMutI CAGTG 1 cut(s) 114
Cac8I GCNNGC 1 cut(s) 453
CfoI GCGC 1 cut(s) 545
CviAII CATG 2 cut(s) 247, 272
CviJI RGCY 8 cut(s) 5, 30, 149, 182, 292, 455, 525, 552
CviKI_1 RGCY 8 cut(s) 5, 30, 149, 182, 292, 455, 525, 552
DdeI CTNAG 7 cut(s) 183, 234, 277, 410, 466, 492, 526
DpnI GATC 4 cut(s) 52, 95, 231, 517
DpnII GATC 4 cut(s) 50, 93, 229, 515
Ecl136II GAGCTC 1 cut(s) 30
Eco24I GRGCYC 1 cut(s) 32
Eco53kI GAGCTC 1 cut(s) 30
Eco57I CTGAAG 1 cut(s) 198
EcoICRI GAGCTC 1 cut(s) 30
EcoT38I GRGCYC 1 cut(s) 32
FaeI CATG 2 cut(s) 250, 275
FaiI YATR 6 cut(s) 166, 168, 248, 260, 273, 507
FatI CATG 2 cut(s) 246, 271
FbaI TGATCA 1 cut(s) 93
Fnu4HI GCNGC 1 cut(s) 219
FokI GGATG 1 cut(s) 432
FriOI GRGCYC 1 cut(s) 32
Fsp4HI GCNGC 1 cut(s) 219
FspBI CTAG 3 cut(s) 227, 243, 479
GlaI GCGC 1 cut(s) 544
GluI GCNGC 1 cut(s) 219
GsuI CTGGAG 1 cut(s) 477
HaeIII GGCC 1 cut(s) 552
HhaI GCGC 1 cut(s) 545
Hin1II CATG 2 cut(s) 250, 275
Hin6I GCGC 1 cut(s) 543
HinP1I GCGC 1 cut(s) 543
HinfI GANTC 4 cut(s) 104, 285, 488, 587
HphI GGTGA 1 cut(s) 542
Hpy188I TCNGA 2 cut(s) 118, 178
Hpy188III TCNNGA 2 cut(s) 197, 279
HpyCH4V TGCA 2 cut(s) 218, 315
HpyF10VI GCNNNNNNNGC 1 cut(s) 549
HpyF3I CTNAG 7 cut(s) 183, 234, 277, 410, 466, 492, 526
Hsp92II CATG 2 cut(s) 250, 275
HspAI GCGC 1 cut(s) 543
Ksp22I TGATCA 1 cut(s) 93
Kzo9I GATC 4 cut(s) 50, 93, 229, 515
LmnI GCTCC 1 cut(s) 35
LpnPI CCDG 6 cut(s) 264, 274, 437, 441, 576, 594
Lsp1109I GCAGC 1 cut(s) 230
LweI GCATC 1 cut(s) 556
MaeI CTAG 3 cut(s) 227, 243, 479
MaeIII GTNAC 1 cut(s) 481
MalI GATC 4 cut(s) 52, 95, 231, 517
MboI GATC 4 cut(s) 50, 93, 229, 515
MboII GAAGA 3 cut(s) 77, 167, 368
MfeI CAATTG 1 cut(s) 435
MflI RGATCY 1 cut(s) 229
MhlI GDGCHC 1 cut(s) 32
MluCI AATT 3 cut(s) 137, 435, 560
MnlI CCTC 5 cut(s) 36, 205, 243, 275, 419
MseI TTAA 3 cut(s) 141, 318, 604
MunI CAATTG 1 cut(s) 435
Mva1269I GAATGC 1 cut(s) 545
MwoI GCNNNNNNNGC 1 cut(s) 549
NdeII GATC 4 cut(s) 50, 93, 229, 515
NlaIII CATG 2 cut(s) 250, 275
NmuCI GTSAC 1 cut(s) 481
NspI RCATGY 1 cut(s) 275
NspV TTCGAA 1 cut(s) 378
PciI ACATGT 1 cut(s) 271
PctI GAATGC 1 cut(s) 545
PfeI GAWTC 4 cut(s) 104, 285, 488, 587
PkrI GCNGC 1 cut(s) 220
PscI ACATGT 1 cut(s) 271
Psp124BI GAGCTC 1 cut(s) 32
PsuI RGATCY 1 cut(s) 229
SacI GAGCTC 1 cut(s) 32
SaqAI TTAA 3 cut(s) 141, 318, 604
SatI GCNGC 1 cut(s) 219
Sau3AI GATC 4 cut(s) 50, 93, 229, 515
SduI GDGCHC 1 cut(s) 32
SetI ASST 6 cut(s) 32, 184, 216, 228, 504, 532
SfaNI GCATC 1 cut(s) 556
SfuI TTCGAA 1 cut(s) 378
Sse9I AATT 3 cut(s) 137, 435, 560
SspMI CTAG 3 cut(s) 227, 243, 479
SstI GAGCTC 1 cut(s) 32
TaqI TCGA 3 cut(s) 198, 378, 577
TasI AATT 3 cut(s) 137, 435, 560
TfiI GAWTC 4 cut(s) 104, 285, 488, 587
Tru1I TTAA 3 cut(s) 141, 318, 604
Tru9I TTAA 3 cut(s) 141, 318, 604
TscAI CASTG 1 cut(s) 114
TseFI GTSAC 1 cut(s) 481
TseI GCWGC 1 cut(s) 218
Tsp45I GTSAC 1 cut(s) 481
TspDTI ATGAA 3 cut(s) 78, 375, 464
TspRI CASTG 1 cut(s) 114
XapI RAATTY 1 cut(s) 137
XceI RCATGY 1 cut(s) 275
XspI CTAG 3 cut(s) 227, 243, 479
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.