Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000857.1

Orthogroup ID

OG0004841

Physical Location & Seq

Genomic Coordinates Forward (+)

133353 .. 135459

Gene Structure 2107 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000857.1_g000026.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 867 bp

atggattccaaggaatttgtagctgacaagcctcatgcggtttctattccagctccagcacaaagccgaataaaggcaatgctcaaactagcaaagcttctccactataggggcctccacatgacctttgttaacactgagttcaaccacaaacggtttcttaaatctcctggacccaactccctcgacggcttgcccgattttcgattcgaggccatccccgatggcattcctgcaggttcggatgaagatgccacccaagacgtcactttggtttgtcatgccataatgaaagatctactactggctccttttcgagacctcctcttgaagctcaacgacgaagacggtagtactccggtgacttgtatcgtttcagatggtttcatgccattcgccatcacagctgctgaagaacttggagtgcctagagtagttttcttcactattgctgcttgcagctttatggcaagtaaacagtatcccactttagtgggaaatggacttgcaccactcaaagagaggatggcggcccaatttgagcaacagttagatcgtgctaaaggaggaaaacgaaaagtgactagtagacaggaaatggcagttcggtgtctgattgggatgcaccttaccttttcggaaagggaatcgcgccagaaacaagactcattgctatgcaatgagctcacaaagattgagaaatcctctactatgaggaaccagtcccacccactgttgttcaccgccgccctcaacgtcgtcgccaaagtccacgaacccatgtacgtgatccgatcaagcttccccaccgcatccatatcccaaacgccggcattggaccaaaaacaatggatggacaaacagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UDPGT

Protein Analysis

288

Amino Acids

32.03

Weight (kDa)

8.54

Isoelectric Point (pI)

49.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004841)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g06290 FvH4_2g06290 FvH4_2g06290
rosa_chinensis	RchiOBHm_Chr6g0256801 RchiOBHm_Chr7g0241311
rosa_laevigata	RLG00000014644
rosa_multiflora	Rmu_sc0000857.1_g000026 Rmu_sc0001070.1_g000027 Rmu_sc0001256.1_g000010 Rmu_sc0003076.1_g000019 Rmu_sc0004277.1_g000042 Rmu_sc0006763.1_g000019 Rmu_sc0007548.1_g000009 Rmu_sc0007633.1_g000016 Rmu_sc0009227.1_g000008 Rmu_sc0009719.1_g000005 Rmu_sc0014303.1_g000002 Rmu_sc0017785.1_g000012
rosa_roxburghii	Rroxscaffold_1G00028540 Rroxscaffold_2G00109820 Rroxscaffold_7G00208170 Rroxscaffold_7G00208180
rosa_rugosa	Rorug05G0577900
rosa_samantha	Rh2AG393100 Rh2BG377300 Rh2CG379800 Rh2DG415700 Rh6AG096300 Rh6BG087500 Rh6CG083400 Rh6DG079200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	267
Acc36I	ACCTGC	1 cut(s)	227
AccI	GTMKAC	1 cut(s)	589
AccII	CGCG	1 cut(s)	652
AciI	CCGC	5 cut(s)	38, 530, 744, 747, 810
AclWI	GGATC	1 cut(s)	784
AcsI	RAATTY	1 cut(s)	14
AcuI	CTGAAG	1 cut(s)	432
AcyI	GRCGYC	1 cut(s)	264
AfaI	GTAC	2 cut(s)	355, 785
AfiI	CCNNNNNNNGG	3 cut(s)	73, 109, 829
AgsI	TTSAA	2 cut(s)	145, 331
AhlI	ACTAGT	1 cut(s)	584
AjnI	CCWGG	1 cut(s)	169
AleI	CACNNNNGTG	1 cut(s)	491
AluBI	AGCT	8 cut(s)	23, 53, 97, 334, 407, 462, 685, 801
AluI	AGCT	8 cut(s)	23, 53, 97, 334, 407, 462, 685, 801
Alw21I	GWGCWC	1 cut(s)	687
Alw26I	GTCTC	1 cut(s)	312
AlwI	GGATC	1 cut(s)	784
AlwNI	CAGNNNCTG	1 cut(s)	410
AoxI	GGCC	3 cut(s)	112, 213, 531
ApeKI	GCWGC	3 cut(s)	407, 452, 459
ApoI	RAATTY	1 cut(s)	14
AspLEI	GCGC	1 cut(s)	654
AspS9I	GGNCC	4 cut(s)	112, 173, 532, 838
AsuHPI	GGTGA	2 cut(s)	373, 733
AvaII	GGWCC	2 cut(s)	173, 838
BanII	GRGCYC	1 cut(s)	687
BbsI	GAAGAC	1 cut(s)	351
Bbv12I	GWGCWC	1 cut(s)	687
BbvI	GCAGC	3 cut(s)	394, 439, 471
BccI	CCATC	6 cut(s)	218, 224, 374, 407, 520, 847
BceAI	ACGGC	1 cut(s)	205
BciT130I	CCWGG	1 cut(s)	171
BciVI	GTATCC	1 cut(s)	492
BcoDI	GTCTC	1 cut(s)	312
BcuI	ACTAGT	1 cut(s)	584
BfaI	CTAG	3 cut(s)	89, 429, 585
BfmI	CTRYAG	2 cut(s)	106, 234
BfuAI	ACCTGC	1 cut(s)	227
BfuI	GTATCC	1 cut(s)	492
BglII	AGATCT	1 cut(s)	295
BisI	GCNGC	5 cut(s)	408, 453, 460, 531, 747
BlsI	GCNGC	5 cut(s)	409, 454, 461, 532, 748
BmcAI	AGTACT	1 cut(s)	355
Bme1390I	CCNGG	1 cut(s)	171
Bme18I	GGWCC	2 cut(s)	173, 838
BmgT120I	GGNCC	4 cut(s)	112, 173, 532, 838
BmiI	GGNNCC	4 cut(s)	113, 175, 309, 719
BmrFI	CCNGG	1 cut(s)	171
BmsI	GCATC	3 cut(s)	241, 612, 821
BpiI	GAAGAC	1 cut(s)	351
BplI	GAGNNNNNCTC	4 cut(s)	309, 341, 689, 721
BpmI	CTGGAG	1 cut(s)	39
BsaAI	YACGTR	1 cut(s)	787
BsaHI	GRCGYC	1 cut(s)	264
BsaI	GGTCTC	1 cut(s)	312
BsaJI	CCNNGG	1 cut(s)	9
BsaWI	WCCGGW	1 cut(s)	358
Bsc4I	CCNNNNNNNGG	3 cut(s)	73, 109, 829
Bse118I	RCCGGY	1 cut(s)	829
Bse1I	ACTGG	2 cut(s)	309, 721
Bse3DI	GCAATG	3 cut(s)	84, 668, 685
BseBI	CCWGG	1 cut(s)	171
BseDI	CCNNGG	1 cut(s)	9
BseGI	GGATG	6 cut(s)	216, 250, 531, 627, 812, 858
BseLI	CCNNNNNNNGG	3 cut(s)	73, 109, 829
BseMI	GCAATG	3 cut(s)	84, 668, 685
BseMII	CTCAG	1 cut(s)	129
BseNI	ACTGG	2 cut(s)	309, 721
BseRI	GAGGAG	1 cut(s)	314
BseXI	GCAGC	3 cut(s)	394, 439, 471
Bsh1236I	CGCG	1 cut(s)	652
BshFI	GGCC	3 cut(s)	114, 215, 533
BsiHKAI	GWGCWC	1 cut(s)	687
BsiSI	CCGG	2 cut(s)	359, 830
BslFI	GGGAC	1 cut(s)	709
BslI	CCNNNNNNNGG	3 cut(s)	73, 109, 829
BsmAI	GTCTC	1 cut(s)	312
BsmFI	GGGAC	1 cut(s)	709
BsmI	GAATGC	1 cut(s)	228
BsnI	GGCC	3 cut(s)	114, 215, 533
Bso31I	GGTCTC	1 cut(s)	312
Bsp1286I	GDGCHC	1 cut(s)	687
Bsp143I	GATC	4 cut(s)	295, 553, 789, 794
BspACI	CCGC	5 cut(s)	38, 530, 744, 747, 810
BspANI	GGCC	3 cut(s)	114, 215, 533
BspCNI	CTCAG	1 cut(s)	130
BspFNI	CGCG	1 cut(s)	652
BspLI	GGNNCC	4 cut(s)	113, 175, 309, 719
BspMAI	CTGCAG	1 cut(s)	238
BspMI	ACCTGC	1 cut(s)	227
BspPI	GGATC	1 cut(s)	784
BspTNI	GGTCTC	1 cut(s)	312
BsrDI	GCAATG	3 cut(s)	84, 668, 685
BsrFI	RCCGGY	1 cut(s)	829
BsrI	ACTGG	2 cut(s)	309, 721
BssAI	RCCGGY	1 cut(s)	829
BssECI	CCNNGG	1 cut(s)	9
BssMI	GATC	4 cut(s)	295, 553, 789, 794
BssNI	GRCGYC	1 cut(s)	264
BssT1I	CCWWGG	1 cut(s)	9
Bst2UI	CCWGG	1 cut(s)	171
Bst4CI	ACNGT	6 cut(s)	156, 350, 480, 549, 735, 864
BstACI	GRCGYC	1 cut(s)	264
BstBAI	YACGTR	1 cut(s)	787
BstC8I	GCNNGC	3 cut(s)	194, 457, 831
BstDEI	CTNAG	1 cut(s)	138
BstF5I	GGATG	6 cut(s)	216, 250, 531, 627, 812, 858
BstFNI	CGCG	1 cut(s)	652
BstHHI	GCGC	1 cut(s)	654
BstKTI	GATC	4 cut(s)	298, 556, 792, 797
BstMAI	GTCTC	1 cut(s)	312
BstMBI	GATC	4 cut(s)	295, 553, 789, 794
BstMWI	GCNNNNNNNGC	1 cut(s)	404
BstNI	CCWGG	1 cut(s)	171
BstSCI	CCNGG	1 cut(s)	169
BstSFI	CTRYAG	2 cut(s)	106, 234
BstUI	CGCG	1 cut(s)	652
BstV1I	GCAGC	3 cut(s)	394, 439, 471
BstV2I	GAAGAC	1 cut(s)	351
BstX2I	RGATCY	1 cut(s)	295
BstXI	CCANNNNNNTGG	1 cut(s)	493
BstYI	RGATCY	1 cut(s)	295
BsuI	GTATCC	1 cut(s)	492
BsuRI	GGCC	3 cut(s)	114, 215, 533
BtsCI	GGATG	6 cut(s)	216, 250, 531, 627, 812, 858
BtsIMutI	CAGTG	2 cut(s)	135, 731
BveI	ACCTGC	1 cut(s)	227
Cac8I	GCNNGC	3 cut(s)	194, 457, 831
CaiI	CAGNNNCTG	1 cut(s)	410
CfoI	GCGC	1 cut(s)	654
Cfr10I	RCCGGY	1 cut(s)	829
Cfr13I	GGNCC	4 cut(s)	112, 173, 532, 838
Csp6I	GTAC	2 cut(s)	354, 784
CviAII	CATG	5 cut(s)	35, 121, 281, 388, 781
CviQI	GTAC	2 cut(s)	354, 784
DdeI	CTNAG	1 cut(s)	138
DpnI	GATC	4 cut(s)	297, 555, 791, 796
DpnII	GATC	4 cut(s)	295, 553, 789, 794
Ecl136II	GAGCTC	1 cut(s)	685
Eco130I	CCWWGG	1 cut(s)	9
Eco24I	GRGCYC	1 cut(s)	687
Eco31I	GGTCTC	1 cut(s)	312
Eco47I	GGWCC	2 cut(s)	173, 838
Eco53kI	GAGCTC	1 cut(s)	685
Eco57I	CTGAAG	1 cut(s)	432
EcoICRI	GAGCTC	1 cut(s)	685
EcoO109I	RGGNCCY	1 cut(s)	112
EcoRII	CCWGG	1 cut(s)	169
EcoT14I	CCWWGG	1 cut(s)	9
EcoT38I	GRGCYC	1 cut(s)	687
ErhI	CCWWGG	1 cut(s)	9
FaeI	CATG	5 cut(s)	38, 124, 284, 391, 784
FaqI	GGGAC	1 cut(s)	709
FatI	CATG	5 cut(s)	34, 120, 280, 387, 780
FblI	GTMKAC	1 cut(s)	589
Fnu4HI	GCNGC	5 cut(s)	408, 453, 460, 531, 747
FokI	GGATG	5 cut(s)	203, 257, 538, 634, 799
FriOI	GRGCYC	1 cut(s)	687
Fsp4HI	GCNGC	5 cut(s)	408, 453, 460, 531, 747
FspBI	CTAG	3 cut(s)	89, 429, 585
GlaI	GCGC	1 cut(s)	653
GluI	GCNGC	5 cut(s)	408, 453, 460, 531, 747
GsuI	CTGGAG	1 cut(s)	39
HaeIII	GGCC	3 cut(s)	114, 215, 533
HapII	CCGG	2 cut(s)	359, 830
HhaI	GCGC	1 cut(s)	654
Hin1I	GRCGYC	1 cut(s)	264
Hin1II	CATG	5 cut(s)	38, 124, 284, 391, 784
Hin6I	GCGC	1 cut(s)	652
HinP1I	GCGC	1 cut(s)	652
HincII	GTYRAC	1 cut(s)	133
HindII	GTYRAC	1 cut(s)	133
HindIII	AAGCTT	2 cut(s)	95, 799
HinfI	GANTC	4 cut(s)	5, 207, 647, 665
HpaI	GTTAAC	1 cut(s)	133
HpaII	CCGG	2 cut(s)	359, 830
HphI	GGTGA	2 cut(s)	373, 733
Hpy166II	GTNNAC	5 cut(s)	133, 476, 590, 741, 772
Hpy188I	TCNGA	5 cut(s)	244, 379, 615, 640, 794
Hpy188III	TCNNGA	2 cut(s)	317, 328
Hpy8I	GTNNAC	5 cut(s)	133, 476, 590, 741, 772
Hpy99I	CGWCG	4 cut(s)	191, 344, 761, 764
HpyCH4III	ACNGT	6 cut(s)	156, 350, 480, 549, 735, 864
HpyCH4IV	ACGT	3 cut(s)	264, 756, 786
HpyCH4V	TGCA	5 cut(s)	236, 459, 509, 625, 678
HpyF10VI	GCNNNNNNNGC	1 cut(s)	404
HpyF3I	CTNAG	1 cut(s)	138
HpySE526I	ACGT	3 cut(s)	264, 756, 786
Hsp92I	GRCGYC	1 cut(s)	264
Hsp92II	CATG	5 cut(s)	38, 124, 284, 391, 784
HspAI	GCGC	1 cut(s)	652
KroI	GCCGGC	1 cut(s)	829
KroNI	GCCGGC	1 cut(s)	831
KspAI	GTTAAC	1 cut(s)	133
Kzo9I	GATC	4 cut(s)	295, 553, 789, 794
LmnI	GCTCC	2 cut(s)	58, 313
Lsp1109I	GCAGC	3 cut(s)	394, 439, 471
LweI	GCATC	3 cut(s)	241, 612, 821
MaeI	CTAG	3 cut(s)	89, 429, 585
MaeII	ACGT	3 cut(s)	264, 756, 786
MaeIII	GTNAC	3 cut(s)	265, 361, 580
MalI	GATC	4 cut(s)	297, 555, 791, 796
MboI	GATC	4 cut(s)	295, 553, 789, 794
MboII	GAAGA	4 cut(s)	260, 356, 425, 433
MflI	RGATCY	1 cut(s)	295
MhlI	GDGCHC	1 cut(s)	687
MluCI	AATT	2 cut(s)	14, 536
MlyI	GAGTC	1 cut(s)	659
MroNI	GCCGGC	1 cut(s)	829
MseI	TTAA	2 cut(s)	132, 162
MslI	CAYNNNNRTG	3 cut(s)	491, 673, 785
MspA1I	CMGCKG	1 cut(s)	407
MspI	CCGG	2 cut(s)	359, 830
MspR9I	CCNGG	1 cut(s)	171
Mva1269I	GAATGC	1 cut(s)	228
MvaI	CCWGG	1 cut(s)	171
MvnI	CGCG	1 cut(s)	652
MwoI	GCNNNNNNNGC	1 cut(s)	404
NaeI	GCCGGC	1 cut(s)	831
NdeII	GATC	4 cut(s)	295, 553, 789, 794
NgoMIV	GCCGGC	1 cut(s)	829
NlaIII	CATG	5 cut(s)	38, 124, 284, 391, 784
NlaIV	GGNNCC	4 cut(s)	113, 175, 309, 719
NmuCI	GTSAC	3 cut(s)	265, 361, 580
OliI	CACNNNNGTG	1 cut(s)	491
PcsI	WCGNNNNNNNCGW	1 cut(s)	195
PctI	GAATGC	1 cut(s)	228
PdiI	GCCGGC	1 cut(s)	831
PfeI	GAWTC	3 cut(s)	5, 207, 647
PfoI	TCCNGGA	1 cut(s)	169
PkrI	GCNGC	5 cut(s)	409, 454, 461, 532, 748
PleI	GAGTC	1 cut(s)	659
PpsI	GAGTC	1 cut(s)	659
Ppu21I	YACGTR	1 cut(s)	787
Psp124BI	GAGCTC	1 cut(s)	687
Psp6I	CCWGG	1 cut(s)	169
PspGI	CCWGG	1 cut(s)	169
PspN4I	GGNNCC	4 cut(s)	113, 175, 309, 719
PspPI	GGNCC	4 cut(s)	112, 173, 532, 838
PstI	CTGCAG	1 cut(s)	238
PstNI	CAGNNNCTG	1 cut(s)	410
PsuI	RGATCY	1 cut(s)	295
PvuII	CAGCTG	1 cut(s)	407
RsaI	GTAC	2 cut(s)	355, 785
RsaNI	GTAC	2 cut(s)	354, 784
RseI	CAYNNNNRTG	3 cut(s)	491, 673, 785
SacI	GAGCTC	1 cut(s)	687
SaqAI	TTAA	2 cut(s)	132, 162
SatI	GCNGC	5 cut(s)	408, 453, 460, 531, 747
Sau3AI	GATC	4 cut(s)	295, 553, 789, 794
Sau96I	GGNCC	4 cut(s)	112, 173, 532, 838
SbfI	CCTGCAGG	1 cut(s)	238
ScaI	AGTACT	1 cut(s)	355
SchI	GAGTC	1 cut(s)	659
ScrFI	CCNGG	1 cut(s)	171
SdaI	CCTGCAGG	1 cut(s)	238
SduI	GDGCHC	1 cut(s)	687
SfaNI	GCATC	3 cut(s)	241, 612, 821
SfcI	CTRYAG	2 cut(s)	106, 234
SinI	GGWCC	2 cut(s)	173, 838
SmiMI	CAYNNNNRTG	3 cut(s)	491, 673, 785
SpeI	ACTAGT	1 cut(s)	584
Sse8387I	CCTGCAGG	1 cut(s)	238
Sse9I	AATT	2 cut(s)	14, 536
SsiI	CCGC	5 cut(s)	38, 530, 744, 747, 810
SspMI	CTAG	3 cut(s)	89, 429, 585
SstI	GAGCTC	1 cut(s)	687
StyD4I	CCNGG	1 cut(s)	169
StyI	CCWWGG	1 cut(s)	9
TaaI	ACNGT	6 cut(s)	156, 350, 480, 549, 735, 864
TaiI	ACGT	3 cut(s)	267, 759, 789
TaqI	TCGA	4 cut(s)	186, 205, 210, 316
TasI	AATT	2 cut(s)	14, 536
TatI	WGTACW	1 cut(s)	353
TauI	GCSGC	2 cut(s)	533, 749
TfiI	GAWTC	3 cut(s)	5, 207, 647
Tru1I	TTAA	2 cut(s)	132, 162
Tru9I	TTAA	2 cut(s)	132, 162
TscAI	CASTG	2 cut(s)	142, 738
TseFI	GTSAC	3 cut(s)	265, 361, 580
TseI	GCWGC	3 cut(s)	407, 452, 459
Tsp45I	GTSAC	3 cut(s)	265, 361, 580
TspDTI	ATGAA	3 cut(s)	261, 305, 376
TspRI	CASTG	2 cut(s)	142, 738
VpaK11BI	GGWCC	2 cut(s)	173, 838
XapI	RAATTY	1 cut(s)	14
XmiI	GTMKAC	1 cut(s)	589
XspI	CTAG	3 cut(s)	89, 429, 585
ZraI	GACGTC	1 cut(s)	265
ZrmI	AGTACT	1 cut(s)	355

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.