Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0004841

Physical Location & Seq

Genomic Coordinates Forward (+)

34033167 .. 34038790

Gene Structure 5624 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00109820.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

ATGGCGGCCCAATTTGAAGAACAGTTGGATCGTGCCAAAAGTGGAAAACGAAAAGTGACTAGTAGACAGGAAATTGCTTCACGGTGTCCGATTGGAACGCATAATACCTTTCCGGAAAGGGAATCGCGCCACGAGTCAAACTCGTCGCTTTGCCACGACCTCAATGTAGGTCAGGCTTGCAGGAAAGGTGAGGCCAAGAGCACTTACGGAACTGGTGCTTTTATTCTTCTCAACACTGGTGAAGAGATAACTCTGTCGAAGCATGGGCTTCTAAGCACTTTGTCATTCAAACTTGGACCTAAAGCTCCTGTAAATTATGCTCTAGAAGGATCCATTGCTATTGCTGGAGCTGCAGTTCAGTGGCTTAGAGACGGTCTTAGGATTATTAAGACTGCAAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002237 GO:0003674 GO:0003824 GO:0004370 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0005975 GO:0006066 GO:0006071 GO:0006072 GO:0006629 GO:0006638 GO:0006639 GO:0006641 GO:0006793 GO:0006796 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009636 GO:0009987 GO:0010033 GO:0010188 GO:0016052 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019400 GO:0019405 GO:0019563 GO:0019637 GO:0019751 GO:0042221 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044255 GO:0044262 GO:0044275 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046164 GO:0046167 GO:0046174 GO:0046486 GO:0050896 GO:0051704 GO:0051707 GO:0052646 GO:0071704 GO:0080167 GO:0090407 GO:0098542 GO:1901135 GO:1901137 GO:1901575 GO:1901576 GO:1901615 GO:1901616

KEGG Pathways

Metabolic & Signaling

ko00561 ko01100 ko03320 ko04626 map00561 map01100 map03320 map04626

Pfam Domains

Protein Families

FGGY_C FGGY_N

Protein Analysis

133

Amino Acids

14.4

Weight (kDa)

9.33

Isoelectric Point (pI)

43.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FGGY_C	PF02782	66 - 126	2.4e-07	FGGY family of carbohydrate kinases, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004841)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g06290 FvH4_2g06290 FvH4_2g06290
rosa_chinensis	RchiOBHm_Chr6g0256801 RchiOBHm_Chr7g0241311
rosa_laevigata	RLG00000014644
rosa_multiflora	Rmu_sc0000857.1_g000026 Rmu_sc0001070.1_g000027 Rmu_sc0001256.1_g000010 Rmu_sc0003076.1_g000019 Rmu_sc0004277.1_g000042 Rmu_sc0006763.1_g000019 Rmu_sc0007548.1_g000009 Rmu_sc0007633.1_g000016 Rmu_sc0009227.1_g000008 Rmu_sc0009719.1_g000005 Rmu_sc0014303.1_g000002 Rmu_sc0017785.1_g000012
rosa_roxburghii	Rroxscaffold_1G00028540 Rroxscaffold_2G00109820 Rroxscaffold_7G00208170 Rroxscaffold_7G00208180
rosa_rugosa	Rorug05G0577900
rosa_samantha	Rh2AG393100 Rh2BG377300 Rh2CG379800 Rh2DG415700 Rh6AG096300 Rh6BG087500 Rh6CG083400 Rh6DG079200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	64
AccII	CGCG	1 cut(s)	127
AccIII	TCCGGA	1 cut(s)	112
AciI	CCGC	1 cut(s)	5
AclWI	GGATC	3 cut(s)	36, 324, 337
AgsI	TTSAA	2 cut(s)	17, 289
AhlI	ACTAGT	1 cut(s)	59
AloI	GAACNNNNNNTCC	2 cut(s)	339, 371
AluBI	AGCT	3 cut(s)	305, 350, 399
AluI	AGCT	3 cut(s)	305, 350, 399
Alw21I	GWGCWC	1 cut(s)	203
Alw26I	GTCTC	1 cut(s)	363
AlwI	GGATC	3 cut(s)	36, 324, 337
Aor13HI	TCCGGA	1 cut(s)	112
AoxI	GGCC	2 cut(s)	6, 192
ApeKI	GCWGC	1 cut(s)	350
AspLEI	GCGC	1 cut(s)	129
AspS9I	GGNCC	2 cut(s)	7, 296
AsuHPI	GGTGA	2 cut(s)	200, 251
AvaII	GGWCC	1 cut(s)	296
BamHI	GGATCC	1 cut(s)	329
BauI	CACGAG	1 cut(s)	131
Bbv12I	GWGCWC	1 cut(s)	203
BbvI	GCAGC	1 cut(s)	337
BcoDI	GTCTC	1 cut(s)	363
BcuI	ACTAGT	1 cut(s)	59
BfaI	CTAG	3 cut(s)	60, 323, 400
BfmI	CTRYAG	1 cut(s)	351
BisI	GCNGC	2 cut(s)	6, 351
BlsI	GCNGC	2 cut(s)	7, 352
Bme18I	GGWCC	1 cut(s)	296
BmgT120I	GGNCC	2 cut(s)	7, 296
BmiI	GGNNCC	1 cut(s)	331
BplI	GAGNNNNNCTC	2 cut(s)	125, 157
BpmI	CTGGAG	1 cut(s)	366
BsaWI	WCCGGW	1 cut(s)	112
BsaXI	ACNNNNNCTCC	2 cut(s)	339, 369
Bse1I	ACTGG	2 cut(s)	217, 241
Bse3DI	GCAATG	1 cut(s)	333
BseAI	TCCGGA	1 cut(s)	112
BseMI	GCAATG	1 cut(s)	333
BseNI	ACTGG	2 cut(s)	217, 241
BseXI	GCAGC	1 cut(s)	337
Bsh1236I	CGCG	1 cut(s)	127
BshFI	GGCC	2 cut(s)	8, 194
BsiHKAI	GWGCWC	1 cut(s)	203
BsiSI	CCGG	1 cut(s)	113
BsmAI	GTCTC	1 cut(s)	363
BsmBI	CGTCTC	1 cut(s)	363
BsnI	GGCC	2 cut(s)	8, 194
Bsp1286I	GDGCHC	1 cut(s)	203
Bsp13I	TCCGGA	1 cut(s)	112
Bsp143I	GATC	2 cut(s)	28, 329
BspACI	CCGC	1 cut(s)	5
BspANI	GGCC	2 cut(s)	8, 194
BspEI	TCCGGA	1 cut(s)	112
BspFNI	CGCG	1 cut(s)	127
BspLI	GGNNCC	1 cut(s)	331
BspMAI	CTGCAG	1 cut(s)	355
BspPI	GGATC	3 cut(s)	36, 324, 337
BsrDI	GCAATG	1 cut(s)	333
BsrI	ACTGG	2 cut(s)	217, 241
BssMI	GATC	2 cut(s)	28, 329
BssSI	CACGAG	1 cut(s)	131
Bst2BI	CACGAG	1 cut(s)	131
Bst4CI	ACNGT	3 cut(s)	24, 84, 374
Bst6I	CTCTTC	1 cut(s)	237
BstC8I	GCNNGC	2 cut(s)	178, 397
BstDEI	CTNAG	3 cut(s)	272, 365, 377
BstFNI	CGCG	1 cut(s)	127
BstHHI	GCGC	1 cut(s)	129
BstKTI	GATC	2 cut(s)	31, 332
BstMAI	GTCTC	1 cut(s)	363
BstMBI	GATC	2 cut(s)	28, 329
BstMWI	GCNNNNNNNGC	1 cut(s)	350
BstSFI	CTRYAG	1 cut(s)	351
BstUI	CGCG	1 cut(s)	127
BstV1I	GCAGC	1 cut(s)	337
BstX2I	RGATCY	1 cut(s)	329
BstYI	RGATCY	1 cut(s)	329
BsuRI	GGCC	2 cut(s)	8, 194
BtsIMutI	CAGTG	2 cut(s)	234, 365
Cac8I	GCNNGC	2 cut(s)	178, 397
CfoI	GCGC	1 cut(s)	129
Cfr13I	GGNCC	2 cut(s)	7, 296
CviAII	CATG	1 cut(s)	263
CviJI	RGCY	8 cut(s)	8, 176, 194, 268, 305, 350, 364, 399
CviKI_1	RGCY	8 cut(s)	8, 176, 194, 268, 305, 350, 364, 399
DdeI	CTNAG	3 cut(s)	272, 365, 377
DpnI	GATC	2 cut(s)	30, 331
DpnII	GATC	2 cut(s)	28, 329
Eam1104I	CTCTTC	1 cut(s)	237
EarI	CTCTTC	1 cut(s)	237
Eco47I	GGWCC	1 cut(s)	296
Esp3I	CGTCTC	1 cut(s)	363
FaeI	CATG	1 cut(s)	266
FaiI	YATR	3 cut(s)	102, 264, 318
FatI	CATG	1 cut(s)	262
FblI	GTMKAC	1 cut(s)	64
Fnu4HI	GCNGC	2 cut(s)	6, 351
Fsp4HI	GCNGC	2 cut(s)	6, 351
FspBI	CTAG	3 cut(s)	60, 323, 400
GlaI	GCGC	1 cut(s)	128
GluI	GCNGC	2 cut(s)	6, 351
GsuI	CTGGAG	1 cut(s)	366
HaeIII	GGCC	2 cut(s)	8, 194
HapII	CCGG	1 cut(s)	113
HhaI	GCGC	1 cut(s)	129
Hin1II	CATG	1 cut(s)	266
Hin6I	GCGC	1 cut(s)	127
HinP1I	GCGC	1 cut(s)	127
HinfI	GANTC	2 cut(s)	122, 134
HpaII	CCGG	1 cut(s)	113
HphI	GGTGA	2 cut(s)	200, 251
Hpy166II	GTNNAC	1 cut(s)	65
Hpy188I	TCNGA	1 cut(s)	90
Hpy188III	TCNNGA	2 cut(s)	113, 323
Hpy8I	GTNNAC	1 cut(s)	65
Hpy99I	CGWCG	1 cut(s)	148
HpyAV	CCTTC	1 cut(s)	320
HpyCH4III	ACNGT	3 cut(s)	24, 84, 374
HpyCH4V	TGCA	3 cut(s)	180, 353, 395
HpyF10VI	GCNNNNNNNGC	1 cut(s)	350
HpyF3I	CTNAG	3 cut(s)	272, 365, 377
Hsp92II	CATG	1 cut(s)	266
HspAI	GCGC	1 cut(s)	127
Kpn2I	TCCGGA	1 cut(s)	112
Kzo9I	GATC	2 cut(s)	28, 329
LmnI	GCTCC	2 cut(s)	310, 347
LpnPI	CCDG	8 cut(s)	53, 126, 158, 166, 198, 222, 321, 330
Lsp1109I	GCAGC	1 cut(s)	337
MaeI	CTAG	3 cut(s)	60, 323, 400
MaeIII	GTNAC	1 cut(s)	55
MalI	GATC	2 cut(s)	30, 331
MboI	GATC	2 cut(s)	28, 329
MboII	GAAGA	3 cut(s)	29, 218, 254
MflI	RGATCY	1 cut(s)	329
MhlI	GDGCHC	1 cut(s)	203
MluCI	AATT	3 cut(s)	11, 72, 313
MlyI	GAGTC	1 cut(s)	143
MmeI	TCCRAC	1 cut(s)	6
MnlI	CCTC	2 cut(s)	170, 184
MroI	TCCGGA	1 cut(s)	112
MseI	TTAA	1 cut(s)	387
MspI	CCGG	1 cut(s)	113
MvnI	CGCG	1 cut(s)	127
MwoI	GCNNNNNNNGC	1 cut(s)	350
NdeII	GATC	2 cut(s)	28, 329
NlaIII	CATG	1 cut(s)	266
NlaIV	GGNNCC	1 cut(s)	331
NmuCI	GTSAC	1 cut(s)	55
PfeI	GAWTC	1 cut(s)	122
PkrI	GCNGC	2 cut(s)	7, 352
PleI	GAGTC	1 cut(s)	142
PpsI	GAGTC	1 cut(s)	142
PspN4I	GGNNCC	1 cut(s)	331
PspPI	GGNCC	2 cut(s)	7, 296
PsrI	GAACNNNNNNTAC	2 cut(s)	88, 120
PstI	CTGCAG	1 cut(s)	355
PsuI	RGATCY	1 cut(s)	329
SaqAI	TTAA	1 cut(s)	387
SatI	GCNGC	2 cut(s)	6, 351
Sau3AI	GATC	2 cut(s)	28, 329
Sau96I	GGNCC	2 cut(s)	7, 296
SchI	GAGTC	1 cut(s)	143
SduI	GDGCHC	1 cut(s)	203
SetI	ASST	8 cut(s)	110, 162, 172, 190, 301, 307, 352, 401
SfcI	CTRYAG	1 cut(s)	351
SinI	GGWCC	1 cut(s)	296
SpeI	ACTAGT	1 cut(s)	59
Sse9I	AATT	3 cut(s)	11, 72, 313
SsiI	CCGC	1 cut(s)	5
SspMI	CTAG	3 cut(s)	60, 323, 400
TaaI	ACNGT	3 cut(s)	24, 84, 374
TaqI	TCGA	1 cut(s)	257
TasI	AATT	3 cut(s)	11, 72, 313
TauI	GCSGC	1 cut(s)	8
TfiI	GAWTC	1 cut(s)	122
Tru1I	TTAA	1 cut(s)	387
Tru9I	TTAA	1 cut(s)	387
TscAI	CASTG	2 cut(s)	241, 365
TseFI	GTSAC	1 cut(s)	55
TseI	GCWGC	1 cut(s)	350
Tsp45I	GTSAC	1 cut(s)	55
TspGWI	ACGGA	1 cut(s)	222
TspRI	CASTG	2 cut(s)	241, 365
VpaK11BI	GGWCC	1 cut(s)	296
XbaI	TCTAGA	1 cut(s)	322
XmiI	GTMKAC	1 cut(s)	64
XspI	CTAG	3 cut(s)	60, 323, 400

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.