Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0014303.1

Orthogroup ID

OG0004841

Physical Location & Seq

Genomic Coordinates Reverse (-)

572 .. 847

Gene Structure 276 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0014303.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 276 bp

atgagacatagtggggacagaccacgacaattactgtcgttcctgttgaacatccgtgttcttcgccacgatgcagacggcagaaagcgaagccgtcgggctgatgcagagcggatggcggcccaatttgaggaacagttagatcgtgctaaaggaggaaaacgaaaagtgactagtagacaggaaacagctcggtgtccgattgggacgtaccttacctttccggaaagggaatcgcgccagaaacaagactcatcgctttgccatgagctgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

91

Amino Acids

10.65

Weight (kDa)

10.5

Isoelectric Point (pI)

76.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004841)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g06290 FvH4_2g06290 FvH4_2g06290
rosa_chinensis	RchiOBHm_Chr6g0256801 RchiOBHm_Chr7g0241311
rosa_laevigata	RLG00000014644
rosa_multiflora	Rmu_sc0000857.1_g000026 Rmu_sc0001070.1_g000027 Rmu_sc0001256.1_g000010 Rmu_sc0003076.1_g000019 Rmu_sc0004277.1_g000042 Rmu_sc0006763.1_g000019 Rmu_sc0007548.1_g000009 Rmu_sc0007633.1_g000016 Rmu_sc0009227.1_g000008 Rmu_sc0009719.1_g000005 Rmu_sc0014303.1_g000002 Rmu_sc0017785.1_g000012
rosa_roxburghii	Rroxscaffold_1G00028540 Rroxscaffold_2G00109820 Rroxscaffold_7G00208170 Rroxscaffold_7G00208180
rosa_rugosa	Rorug05G0577900
rosa_samantha	Rh2AG393100 Rh2BG377300 Rh2CG379800 Rh2DG415700 Rh6AG096300 Rh6BG087500 Rh6CG083400 Rh6DG079200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	112
AccI	GTMKAC	1 cut(s)	178
AccII	CGCG	1 cut(s)	238
AccIII	TCCGGA	1 cut(s)	223
AciI	CCGC	2 cut(s)	112, 119
AfaI	GTAC	1 cut(s)	212
AfiI	CCNNNNNNNGG	1 cut(s)	130
AgsI	TTSAA	1 cut(s)	49
AhlI	ACTAGT	1 cut(s)	173
AluBI	AGCT	2 cut(s)	191, 271
AluI	AGCT	2 cut(s)	191, 271
Aor13HI	TCCGGA	1 cut(s)	223
AoxI	GGCC	1 cut(s)	120
AspLEI	GCGC	1 cut(s)	240
AspS9I	GGNCC	1 cut(s)	121
BccI	CCATC	1 cut(s)	109
BceAI	ACGGC	2 cut(s)	78, 94
BcuI	ACTAGT	1 cut(s)	173
BfaI	CTAG	1 cut(s)	174
BfmI	CTRYAG	1 cut(s)	272
BisI	GCNGC	1 cut(s)	120
BlsI	GCNGC	1 cut(s)	121
BmgT120I	GGNCC	1 cut(s)	121
BmsI	GCATC	2 cut(s)	61, 94
BsaWI	WCCGGW	1 cut(s)	223
Bsc4I	CCNNNNNNNGG	1 cut(s)	130
BseAI	TCCGGA	1 cut(s)	223
BseGI	GGATG	2 cut(s)	51, 120
BseLI	CCNNNNNNNGG	1 cut(s)	130
Bsh1236I	CGCG	1 cut(s)	238
BshFI	GGCC	1 cut(s)	122
BsiSI	CCGG	1 cut(s)	224
BslFI	GGGAC	2 cut(s)	29, 220
BslI	CCNNNNNNNGG	1 cut(s)	130
BsmFI	GGGAC	2 cut(s)	29, 220
BsnI	GGCC	1 cut(s)	122
Bsp13I	TCCGGA	1 cut(s)	223
Bsp143I	GATC	1 cut(s)	142
BspACI	CCGC	2 cut(s)	112, 119
BspANI	GGCC	1 cut(s)	122
BspEI	TCCGGA	1 cut(s)	223
BspFNI	CGCG	1 cut(s)	238
BsrBI	CCGCTC	1 cut(s)	112
BssMI	GATC	1 cut(s)	142
Bst4CI	ACNGT	2 cut(s)	36, 138
BstF5I	GGATG	2 cut(s)	51, 120
BstFNI	CGCG	1 cut(s)	238
BstHHI	GCGC	1 cut(s)	240
BstKTI	GATC	1 cut(s)	145
BstMBI	GATC	1 cut(s)	142
BstSFI	CTRYAG	1 cut(s)	272
BstUI	CGCG	1 cut(s)	238
BsuRI	GGCC	1 cut(s)	122
BtgZI	GCGATG	1 cut(s)	240
BtsCI	GGATG	2 cut(s)	51, 120
CfoI	GCGC	1 cut(s)	240
Cfr13I	GGNCC	1 cut(s)	121
Csp6I	GTAC	1 cut(s)	211
CviAII	CATG	1 cut(s)	266
CviJI	RGCY	5 cut(s)	93, 101, 122, 191, 271
CviKI_1	RGCY	5 cut(s)	93, 101, 122, 191, 271
CviQI	GTAC	1 cut(s)	211
DpnI	GATC	1 cut(s)	144
DpnII	GATC	1 cut(s)	142
FaeI	CATG	1 cut(s)	269
FaiI	YATR	2 cut(s)	9, 267
FaqI	GGGAC	2 cut(s)	29, 220
FatI	CATG	1 cut(s)	265
FblI	GTMKAC	1 cut(s)	178
Fnu4HI	GCNGC	1 cut(s)	120
FokI	GGATG	2 cut(s)	38, 127
Fsp4HI	GCNGC	1 cut(s)	120
FspBI	CTAG	1 cut(s)	174
GlaI	GCGC	1 cut(s)	239
GluI	GCNGC	1 cut(s)	120
HaeIII	GGCC	1 cut(s)	122
HapII	CCGG	1 cut(s)	224
HhaI	GCGC	1 cut(s)	240
Hin1II	CATG	1 cut(s)	269
Hin6I	GCGC	1 cut(s)	238
HinP1I	GCGC	1 cut(s)	238
HinfI	GANTC	2 cut(s)	233, 251
HpaII	CCGG	1 cut(s)	224
Hpy166II	GTNNAC	1 cut(s)	179
Hpy188I	TCNGA	1 cut(s)	201
Hpy188III	TCNNGA	1 cut(s)	224
Hpy8I	GTNNAC	1 cut(s)	179
Hpy99I	CGWCG	1 cut(s)	99
HpyCH4III	ACNGT	2 cut(s)	36, 138
HpyCH4IV	ACGT	1 cut(s)	209
HpyCH4V	TGCA	2 cut(s)	74, 107
HpySE526I	ACGT	1 cut(s)	209
Hsp92II	CATG	1 cut(s)	269
HspAI	GCGC	1 cut(s)	238
Kpn2I	TCCGGA	1 cut(s)	223
Kzo9I	GATC	1 cut(s)	142
LpnPI	CCDG	4 cut(s)	56, 167, 237, 254
LweI	GCATC	2 cut(s)	61, 94
MaeI	CTAG	1 cut(s)	174
MaeII	ACGT	1 cut(s)	209
MaeIII	GTNAC	1 cut(s)	169
MalI	GATC	1 cut(s)	144
MbiI	CCGCTC	1 cut(s)	112
MboI	GATC	1 cut(s)	142
MboII	GAAGA	1 cut(s)	53
MluCI	AATT	2 cut(s)	29, 125
MlyI	GAGTC	1 cut(s)	245
MnlI	CCTC	2 cut(s)	124, 149
MroI	TCCGGA	1 cut(s)	223
MspI	CCGG	1 cut(s)	224
MvnI	CGCG	1 cut(s)	238
NdeII	GATC	1 cut(s)	142
NlaIII	CATG	1 cut(s)	269
NmuCI	GTSAC	1 cut(s)	169
PfeI	GAWTC	1 cut(s)	233
PkrI	GCNGC	1 cut(s)	121
PleI	GAGTC	1 cut(s)	245
PpsI	GAGTC	1 cut(s)	245
PspPI	GGNCC	1 cut(s)	121
RsaI	GTAC	1 cut(s)	212
RsaNI	GTAC	1 cut(s)	211
SatI	GCNGC	1 cut(s)	120
Sau3AI	GATC	1 cut(s)	142
Sau96I	GGNCC	1 cut(s)	121
SchI	GAGTC	1 cut(s)	245
SetI	ASST	5 cut(s)	193, 212, 216, 221, 273
SfaNI	GCATC	2 cut(s)	61, 94
SfcI	CTRYAG	1 cut(s)	272
SpeI	ACTAGT	1 cut(s)	173
Sse9I	AATT	2 cut(s)	29, 125
SsiI	CCGC	2 cut(s)	112, 119
SspMI	CTAG	1 cut(s)	174
TaaI	ACNGT	2 cut(s)	36, 138
TaiI	ACGT	1 cut(s)	212
TasI	AATT	2 cut(s)	29, 125
TauI	GCSGC	1 cut(s)	122
TfiI	GAWTC	1 cut(s)	233
TseFI	GTSAC	1 cut(s)	169
Tsp45I	GTSAC	1 cut(s)	169
TspGWI	ACGGA	1 cut(s)	44
XmiI	GTMKAC	1 cut(s)	178
XspI	CTAG	1 cut(s)	174

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.