RchiOBHm_Chr4g0426051

Desiccation-related protein PCC13-62-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0003995
Physical Location & Seq
Reverse (-)
51586894 .. 51588138
1245 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 612 bp
ATGGCACATTTTGCTCATACCAGCACCACCGCTATACTTGCTTTCCTCAGTTTCCTTCTTCTTCTTCCACATTCTTACTCTTCTATCCCAAAGTCAGATGTTGATCTCTTGGAGTTTCCTTTGAACCTTGAGTACTTAGAAGCTGAGTTCTTCCTGTATGGCTCTTTGGGTTTTGGCTTGGACAAAGTTGCTTCAAACTTGACATTGGGAGCTTGTTGCGGGTCTTTTGGCTGTGGAATCAGGACAAGATGTGTGATTAGAACATTGCTGTATAAGAATGCTCTGGTGAGAGTGCACCCATATGGAATAACAGTGGTCGAGTTTACAAATTGGCTTTCTGATCTGAGGAACAAGCTGGGACAGACAGGTTCGAAAGATGAAGGCCCTCTGGTTCCAAAATATAAAGGAGCTGAGGGAAACATCATTGGCAATGTTCTTGCCGGAACTGCATATTCAGTAGCATATGACAGGAGTCACAGGACACCGGAGGAGATACTAAGAATTGTATATGGATCAGGTGATGAACATGTCCCTGGGGGTTTCTATCATAAAGGAGCTGATGGTCGTATTGCAAAATCTCATCTGCAAAATGGTACTGGAAGAAATAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ferritin_2

Protein Analysis

203

Amino Acids

22.11

Weight (kDa)

7.73

Isoelectric Point (pI)

23.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ferritin_2 PF13668 32 - 67 4.8e-07 Ferritin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 30, 219
AclWI GGATC 1 cut(s) 520
AfaI GTAC 2 cut(s) 134, 595
AflIII ACRYGT 1 cut(s) 526
AgsI TTSAA 2 cut(s) 124, 195
AjnI CCWGG 1 cut(s) 532
AluBI AGCT 5 cut(s) 143, 212, 355, 410, 557
AluI AGCT 5 cut(s) 143, 212, 355, 410, 557
Alw21I GWGCWC 1 cut(s) 297
Alw44I GTGCAC 1 cut(s) 293
AlwI GGATC 1 cut(s) 520
AoxI GGCC 1 cut(s) 382
ApaLI GTGCAC 1 cut(s) 293
AspS9I GGNCC 1 cut(s) 383
AsuHPI GGTGA 2 cut(s) 298, 530
AsuII TTCGAA 1 cut(s) 371
BaeGI GKGCMC 1 cut(s) 297
Bbv12I GWGCWC 1 cut(s) 297
BbvCI CCTCAGC 1 cut(s) 411
BccI CCATC 1 cut(s) 554
BciT130I CCWGG 1 cut(s) 534
BmcAI AGTACT 1 cut(s) 134
Bme1390I CCNGG 1 cut(s) 534
BmgT120I GGNCC 1 cut(s) 383
BmiI GGNNCC 1 cut(s) 393
BmrFI CCNGG 1 cut(s) 534
BoxI GACNNNNGTC 1 cut(s) 471
Bpu10I CCTNAGC 1 cut(s) 411
Bpu14I TTCGAA 1 cut(s) 371
BpuEI CTTGAG 1 cut(s) 149
BsaBI GATNNNNATC 1 cut(s) 102
BsaJI CCNNGG 2 cut(s) 532, 533
BsaWI WCCGGW 1 cut(s) 484
Bse1I ACTGG 1 cut(s) 601
Bse3DI GCAATG 2 cut(s) 263, 436
Bse8I GATNNNNATC 1 cut(s) 102
BseBI CCWGG 1 cut(s) 534
BseDI CCNNGG 2 cut(s) 532, 533
BseJI GATNNNNATC 1 cut(s) 102
BseMI GCAATG 2 cut(s) 263, 436
BseMII CTCAG 4 cut(s) 61, 135, 335, 402
BseNI ACTGG 1 cut(s) 601
BseRI GAGGAG 1 cut(s) 503
BseSI GKGCMC 1 cut(s) 297
BseYI CCCAGC 1 cut(s) 355
BshFI GGCC 1 cut(s) 384
BsiHKAI GWGCWC 1 cut(s) 297
BsiSI CCGG 2 cut(s) 441, 485
BslFI GGGAC 2 cut(s) 372, 515
BsmFI GGGAC 2 cut(s) 372, 515
BsmI GAATGC 1 cut(s) 283
BsnI GGCC 1 cut(s) 384
Bsp119I TTCGAA 1 cut(s) 371
Bsp1286I GDGCHC 1 cut(s) 297
Bsp143I GATC 3 cut(s) 103, 340, 512
BspACI CCGC 2 cut(s) 30, 219
BspANI GGCC 1 cut(s) 384
BspCNI CTCAG 4 cut(s) 60, 136, 336, 403
BspLI GGNNCC 1 cut(s) 393
BspPI GGATC 1 cut(s) 520
BspT104I TTCGAA 1 cut(s) 371
BsrDI GCAATG 2 cut(s) 263, 436
BsrI ACTGG 1 cut(s) 601
BssECI CCNNGG 2 cut(s) 532, 533
BssMI GATC 3 cut(s) 103, 340, 512
Bst2UI CCWGG 1 cut(s) 534
Bst4CI ACNGT 1 cut(s) 313
Bst6I CTCTTC 1 cut(s) 85
BstAPI GCANNNNNTGC 1 cut(s) 11
BstBI TTCGAA 1 cut(s) 371
BstDEI CTNAG 6 cut(s) 47, 136, 144, 344, 411, 497
BstKTI GATC 3 cut(s) 106, 343, 515
BstMBI GATC 3 cut(s) 103, 340, 512
BstMWI GCNNNNNNNGC 3 cut(s) 11, 38, 446
BstNI CCWGG 1 cut(s) 534
BstNSI RCATGY 1 cut(s) 530
BstPAI GACNNNNGTC 1 cut(s) 471
BstSCI CCNGG 1 cut(s) 532
BstSLI GKGCMC 1 cut(s) 297
BsuRI GGCC 1 cut(s) 384
BtsIMutI CAGTG 1 cut(s) 318
Cfr13I GGNCC 1 cut(s) 383
Csp6I GTAC 2 cut(s) 133, 594
CviAII CATG 1 cut(s) 527
CviQI GTAC 2 cut(s) 133, 594
DdeI CTNAG 6 cut(s) 47, 136, 144, 344, 411, 497
DpnI GATC 3 cut(s) 105, 342, 514
DpnII GATC 3 cut(s) 103, 340, 512
Eam1104I CTCTTC 1 cut(s) 85
EarI CTCTTC 1 cut(s) 85
EcoO109I RGGNCCY 1 cut(s) 383
EcoRII CCWGG 1 cut(s) 532
FaeI CATG 1 cut(s) 530
FaqI GGGAC 2 cut(s) 372, 515
FatI CATG 1 cut(s) 526
FauI CCCGC 1 cut(s) 212
FauNDI CATATG 2 cut(s) 301, 463
GsaI CCCAGC 1 cut(s) 359
HaeIII GGCC 1 cut(s) 384
HapII CCGG 2 cut(s) 441, 485
Hin1II CATG 1 cut(s) 530
HinfI GANTC 2 cut(s) 237, 472
HpaII CCGG 2 cut(s) 441, 485
HphI GGTGA 2 cut(s) 298, 530
Hpy166II GTNNAC 2 cut(s) 295, 324
Hpy188I TCNGA 3 cut(s) 97, 340, 345
Hpy188III TCNNGA 1 cut(s) 241
Hpy8I GTNNAC 2 cut(s) 295, 324
HpyAV CCTTC 2 cut(s) 65, 374
HpyCH4III ACNGT 1 cut(s) 313
HpyCH4V TGCA 4 cut(s) 295, 449, 572, 586
HpyF10VI GCNNNNNNNGC 3 cut(s) 11, 38, 446
HpyF3I CTNAG 6 cut(s) 47, 136, 144, 344, 411, 497
Hsp92II CATG 1 cut(s) 530
Kzo9I GATC 3 cut(s) 103, 340, 512
LmnI GCTCC 3 cut(s) 209, 407, 554
MaeIII GTNAC 1 cut(s) 473
MalI GATC 3 cut(s) 105, 342, 514
MboI GATC 3 cut(s) 103, 340, 512
MboII GAAGA 6 cut(s) 50, 53, 56, 72, 142, 612
MhlI GDGCHC 1 cut(s) 297
MluCI AATT 2 cut(s) 328, 501
MlyI GAGTC 1 cut(s) 481
MnlI CCTC 5 cut(s) 56, 339, 396, 406, 481
MslI CAYNNNNRTG 1 cut(s) 300
MspI CCGG 2 cut(s) 441, 485
MspR9I CCNGG 1 cut(s) 534
Mva1269I GAATGC 1 cut(s) 283
MvaI CCWGG 1 cut(s) 534
MwoI GCNNNNNNNGC 3 cut(s) 11, 38, 446
NdeI CATATG 2 cut(s) 301, 463
NdeII GATC 3 cut(s) 103, 340, 512
NlaIII CATG 1 cut(s) 530
NlaIV GGNNCC 1 cut(s) 393
NmuCI GTSAC 1 cut(s) 473
NspI RCATGY 1 cut(s) 530
NspV TTCGAA 1 cut(s) 371
PasI CCCWGGG 1 cut(s) 533
PciI ACATGT 1 cut(s) 526
PctI GAATGC 1 cut(s) 283
PfeI GAWTC 1 cut(s) 237
PleI GAGTC 1 cut(s) 480
PpsI GAGTC 1 cut(s) 480
PscI ACATGT 1 cut(s) 526
PshAI GACNNNNGTC 1 cut(s) 471
Psp6I CCWGG 1 cut(s) 532
PspFI CCCAGC 1 cut(s) 355
PspGI CCWGG 1 cut(s) 532
PspN4I GGNNCC 1 cut(s) 393
PspPI GGNCC 1 cut(s) 383
PsrI GAACNNNNNNTAC 2 cut(s) 116, 148
RsaI GTAC 2 cut(s) 134, 595
RsaNI GTAC 2 cut(s) 133, 594
RseI CAYNNNNRTG 1 cut(s) 300
Sau3AI GATC 3 cut(s) 103, 340, 512
Sau96I GGNCC 1 cut(s) 383
ScaI AGTACT 1 cut(s) 134
SchI GAGTC 1 cut(s) 481
ScrFI CCNGG 1 cut(s) 534
SduI GDGCHC 1 cut(s) 297
SetI ASST 8 cut(s) 129, 145, 214, 357, 370, 412, 520, 559
SfuI TTCGAA 1 cut(s) 371
SmiMI CAYNNNNRTG 1 cut(s) 300
SmlI CTYRAG 1 cut(s) 128
SmoI CTYRAG 1 cut(s) 128
Sse9I AATT 2 cut(s) 328, 501
SsiI CCGC 2 cut(s) 30, 219
StyD4I CCNGG 1 cut(s) 532
TaaI ACNGT 1 cut(s) 313
TaqI TCGA 2 cut(s) 318, 371
TasI AATT 2 cut(s) 328, 501
TatI WGTACW 1 cut(s) 132
TfiI GAWTC 1 cut(s) 237
TscAI CASTG 1 cut(s) 318
TseFI GTSAC 1 cut(s) 473
Tsp45I GTSAC 1 cut(s) 473
TspDTI ATGAA 2 cut(s) 393, 537
TspRI CASTG 1 cut(s) 318
VneI GTGCAC 1 cut(s) 293
XceI RCATGY 1 cut(s) 530
ZrmI AGTACT 1 cut(s) 134
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.