RchiOBHm_Chr3g0455531

FACT complex subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0006425
Physical Location & Seq
Reverse (-)
5226472 .. 5229361
2890 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 795 bp
ATGGCTTCATCATGGAGGGACCCGTTTAGGACCTTTCTGATTGATCCCAATGACCTTCCTAGCAAGGCATGTGAAGTTCTGTACAAGGCCCATGAAGCAGCCATTAAGGAGTTGAAGCCCGGAAACAAAGCTTGTACTGCTTATGAAGCAGCAGTTTCTGTTGTAAAGAAGGAGGCCCCTGAATTATCATGTAAGATGACAACAAATACTAGACCAGGCATTATCTTTGCACTCCATGAATCTGTTTTGGATCTCAATGGGCAAAATGAGCAACTGGTGAAAGAAGGCGAGGTGTTTAATATGTCCCTCGGTTTTGAGAACCTGCAGTATTCCAAGGGAAAAAGAATCTCTATGTGGCTAGCAGACACTGTTACTGTACAGAGTGTTATTCCTGAGGTTCTGACAGCGAAGTGTTCTAAAACGAATGAGAATATTAAATTACCCTTAGCTGACAATGGAGGAGAAAGGCAGCCAGAGTTCATGATATTTGATGATGATGATGTAGAAACCTGCAAAAAACGGAAAAGAAGAGAGATGGAGGACTTGGAAGAAGCTTATAGTTTACAGACCCAATTGGATGCAAAAGTTAATGATATTGAAGCGCTTAATATCAAGTTGGAAGAGATCAATGCTGGAAGAGAAAAAAATAAAAGTGAGGATCAGGAAGCCTTGACAGCTTTACATGTTCATGAGAAAAATATAAACAACAGATTCAAGAAGATGGAGTTGGCTAGGAAAGCTCAATCAGAATTTAACGAATTGGATGTCCTATTTGATGAATTTGATCACCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000228 GO:0000785 GO:0000790 GO:0000791 GO:0003006 GO:0003674 GO:0003682 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005719 GO:0005730 GO:0006139 GO:0006325 GO:0006333 GO:0006351 GO:0006354 GO:0006355 GO:0006357 GO:0006366 GO:0006368 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0008023 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009791 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010228 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016043 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0022414 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031491 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032774 GO:0032784 GO:0032786 GO:0032968 GO:0032991 GO:0034243 GO:0034641 GO:0034645 GO:0034654 GO:0034724 GO:0034728 GO:0035101 GO:0042393 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0044877 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051276 GO:0060255 GO:0061458 GO:0065007 GO:0070013 GO:0071704 GO:0071824 GO:0071840 GO:0080090 GO:0090304 GO:0097659 GO:1901360 GO:1901362 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FACT-Spt16_Nlob Peptidase_M24 Rtt106 SPT16

Protein Analysis

264

Amino Acids

30.04

Weight (kDa)

5.07

Isoelectric Point (pI)

49.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_M24 PF00557 10 - 127 4.7e-10 Metallopeptidase family M24
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 330, 518
AclWI GGATC 3 cut(s) 38, 258, 666
AcsI RAATTY 2 cut(s) 749, 779
AfaI GTAC 3 cut(s) 83, 136, 378
AfeI AGCGCT 1 cut(s) 603
AflIII ACRYGT 1 cut(s) 682
AgsI TTSAA 3 cut(s) 115, 599, 715
AjnI CCWGG 1 cut(s) 214
AjuI GAANNNNNNNTTGG 2 cut(s) 710, 742
AluBI AGCT 5 cut(s) 131, 449, 554, 677, 740
AluI AGCT 5 cut(s) 131, 449, 554, 677, 740
AlwI GGATC 3 cut(s) 38, 258, 666
AlwNI CAGNNNCTG 2 cut(s) 158, 368
Aor51HI AGCGCT 1 cut(s) 603
AoxI GGCC 2 cut(s) 87, 174
ApeKI GCWGC 3 cut(s) 98, 149, 469
ApoI RAATTY 2 cut(s) 749, 779
ArsI GACNNNNNNTTYG 2 cut(s) 750, 782
AspLEI GCGC 1 cut(s) 604
AspS9I GGNCC 4 cut(s) 19, 30, 88, 175
AsuC2I CCSGG 1 cut(s) 120
AsuHPI GGTGA 2 cut(s) 289, 779
AsuNHI GCTAGC 1 cut(s) 358
AvaII GGWCC 2 cut(s) 19, 30
AxyI CCTNAGG 1 cut(s) 393
BbvI GCAGC 3 cut(s) 110, 161, 481
BccI CCATC 2 cut(s) 529, 715
BciT130I CCWGG 1 cut(s) 216
BclI TGATCA 1 cut(s) 784
BcnI CCSGG 1 cut(s) 120
BfaI CTAG 4 cut(s) 60, 210, 359, 732
BfmI CTRYAG 1 cut(s) 323
BfoI RGCGCY 1 cut(s) 605
BfuAI ACCTGC 2 cut(s) 330, 518
BisI GCNGC 3 cut(s) 99, 150, 470
BlsI GCNGC 3 cut(s) 100, 151, 471
Bme1390I CCNGG 2 cut(s) 120, 216
Bme18I GGWCC 2 cut(s) 19, 30
BmgT120I GGNCC 4 cut(s) 19, 30, 88, 175
BmiI GGNNCC 3 cut(s) 20, 21, 177
BmrFI CCNGG 2 cut(s) 120, 216
BmsI GCATC 1 cut(s) 568
BmtI GCTAGC 1 cut(s) 362
Bpu10I CCTNAGC 1 cut(s) 445
BpuMI CCSGG 1 cut(s) 120
BsaJI CCNNGG 2 cut(s) 307, 333
Bse1I ACTGG 1 cut(s) 279
Bse21I CCTNAGG 1 cut(s) 393
BseBI CCWGG 1 cut(s) 216
BseDI CCNNGG 2 cut(s) 307, 333
BseGI GGATG 2 cut(s) 583, 769
BseMII CTCAG 1 cut(s) 384
BseNI ACTGG 1 cut(s) 279
BseRI GAGGAG 1 cut(s) 474
BseXI GCAGC 3 cut(s) 110, 161, 481
BshFI GGCC 2 cut(s) 89, 176
BsiSI CCGG 1 cut(s) 120
BslFI GGGAC 2 cut(s) 32, 289
BsmFI GGGAC 2 cut(s) 32, 289
BsnI GGCC 2 cut(s) 89, 176
Bsp1407I TGTACA 2 cut(s) 81, 376
Bsp143I GATC 5 cut(s) 43, 250, 624, 658, 784
BspANI GGCC 2 cut(s) 89, 176
BspCNI CTCAG 1 cut(s) 385
BspHI TCATGA 2 cut(s) 480, 688
BspLI GGNNCC 3 cut(s) 20, 21, 177
BspMAI CTGCAG 1 cut(s) 327
BspMI ACCTGC 2 cut(s) 330, 518
BspOI GCTAGC 1 cut(s) 362
BspPI GGATC 3 cut(s) 38, 258, 666
BsrGI TGTACA 2 cut(s) 81, 376
BsrI ACTGG 1 cut(s) 279
BssECI CCNNGG 2 cut(s) 307, 333
BssMI GATC 5 cut(s) 43, 250, 624, 658, 784
BssT1I CCWWGG 1 cut(s) 333
Bst2UI CCWGG 1 cut(s) 216
Bst4CI ACNGT 2 cut(s) 370, 376
Bst6I CTCTTC 3 cut(s) 523, 615, 631
BstAUI TGTACA 2 cut(s) 81, 376
BstC8I GCNNGC 1 cut(s) 360
BstDEI CTNAG 2 cut(s) 393, 445
BstF5I GGATG 2 cut(s) 583, 769
BstH2I RGCGCY 1 cut(s) 605
BstHHI GCGC 1 cut(s) 604
BstKTI GATC 5 cut(s) 46, 253, 627, 661, 787
BstMBI GATC 5 cut(s) 43, 250, 624, 658, 784
BstMWI GCNNNNNNNGC 6 cut(s) 95, 137, 146, 268, 674, 737
BstNI CCWGG 1 cut(s) 216
BstNSI RCATGY 2 cut(s) 72, 686
BstSCI CCNGG 2 cut(s) 118, 214
BstSFI CTRYAG 1 cut(s) 323
BstV1I GCAGC 3 cut(s) 110, 161, 481
BstX2I RGATCY 1 cut(s) 250
BstYI RGATCY 1 cut(s) 250
Bsu36I CCTNAGG 1 cut(s) 393
BsuRI GGCC 2 cut(s) 89, 176
BtsCI GGATG 2 cut(s) 583, 769
BtsIMutI CAGTG 1 cut(s) 366
BveI ACCTGC 2 cut(s) 330, 518
Cac8I GCNNGC 1 cut(s) 360
CaiI CAGNNNCTG 2 cut(s) 158, 368
CciI TCATGA 2 cut(s) 480, 688
CfoI GCGC 1 cut(s) 604
Cfr13I GGNCC 4 cut(s) 19, 30, 88, 175
Csp6I GTAC 3 cut(s) 82, 135, 377
CviAII CATG 8 cut(s) 12, 69, 92, 189, 236, 481, 683, 689
CviQI GTAC 3 cut(s) 82, 135, 377
DdeI CTNAG 2 cut(s) 393, 445
DpnI GATC 5 cut(s) 45, 252, 626, 660, 786
DpnII GATC 5 cut(s) 43, 250, 624, 658, 784
Eam1104I CTCTTC 3 cut(s) 523, 615, 631
EarI CTCTTC 3 cut(s) 523, 615, 631
Eco130I CCWWGG 1 cut(s) 333
Eco47I GGWCC 2 cut(s) 19, 30
Eco47III AGCGCT 1 cut(s) 603
Eco81I CCTNAGG 1 cut(s) 393
EcoO109I RGGNCCY 3 cut(s) 19, 30, 175
EcoRII CCWGG 1 cut(s) 214
EcoT14I CCWWGG 1 cut(s) 333
ErhI CCWWGG 1 cut(s) 333
FaeI CATG 8 cut(s) 15, 72, 95, 192, 239, 484, 686, 692
FaqI GGGAC 2 cut(s) 32, 289
FatI CATG 8 cut(s) 11, 68, 91, 188, 235, 480, 682, 688
FbaI TGATCA 1 cut(s) 784
Fnu4HI GCNGC 3 cut(s) 99, 150, 470
FokI GGATG 2 cut(s) 590, 776
Fsp4HI GCNGC 3 cut(s) 99, 150, 470
FspBI CTAG 4 cut(s) 60, 210, 359, 732
GlaI GCGC 1 cut(s) 603
GluI GCNGC 3 cut(s) 99, 150, 470
HaeII RGCGCY 1 cut(s) 605
HaeIII GGCC 2 cut(s) 89, 176
HapII CCGG 1 cut(s) 120
HhaI GCGC 1 cut(s) 604
Hin1II CATG 8 cut(s) 15, 72, 95, 192, 239, 484, 686, 692
Hin6I GCGC 1 cut(s) 602
HinP1I GCGC 1 cut(s) 602
HindIII AAGCTT 2 cut(s) 129, 552
HinfI GANTC 3 cut(s) 239, 345, 711
HpaII CCGG 1 cut(s) 120
HphI GGTGA 2 cut(s) 289, 779
Hpy166II GTNNAC 1 cut(s) 563
Hpy188I TCNGA 3 cut(s) 39, 402, 748
Hpy188III TCNNGA 5 cut(s) 392, 481, 662, 689, 715
Hpy8I GTNNAC 1 cut(s) 563
HpyAV CCTTC 3 cut(s) 65, 163, 278
HpyCH4III ACNGT 2 cut(s) 370, 376
HpyCH4V TGCA 4 cut(s) 230, 325, 513, 581
HpyF10VI GCNNNNNNNGC 6 cut(s) 95, 137, 146, 268, 674, 737
HpyF3I CTNAG 2 cut(s) 393, 445
Hsp92II CATG 8 cut(s) 15, 72, 95, 192, 239, 484, 686, 692
HspAI GCGC 1 cut(s) 602
KflI GGGWCCC 1 cut(s) 19
Ksp22I TGATCA 1 cut(s) 784
Kzo9I GATC 5 cut(s) 43, 250, 624, 658, 784
Lsp1109I GCAGC 3 cut(s) 110, 161, 481
LweI GCATC 1 cut(s) 568
MaeI CTAG 4 cut(s) 60, 210, 359, 732
MaeIII GTNAC 1 cut(s) 370
MalI GATC 5 cut(s) 45, 252, 626, 660, 786
MboI GATC 5 cut(s) 43, 250, 624, 658, 784
MboII GAAGA 5 cut(s) 540, 560, 632, 648, 730
MfeI CAATTG 1 cut(s) 572
MflI RGATCY 1 cut(s) 250
MluCI AATT 6 cut(s) 182, 437, 572, 749, 758, 779
MmeI TCCRAC 1 cut(s) 597
MnlI CCTC 8 cut(s) 9, 166, 283, 317, 388, 452, 532, 649
MseI TTAA 6 cut(s) 105, 297, 435, 588, 606, 753
MslI CAYNNNNRTG 1 cut(s) 687
MspI CCGG 1 cut(s) 120
MspR9I CCNGG 2 cut(s) 120, 216
MunI CAATTG 1 cut(s) 572
MvaI CCWGG 1 cut(s) 216
MwoI GCNNNNNNNGC 6 cut(s) 95, 137, 146, 268, 674, 737
NciI CCSGG 1 cut(s) 120
NdeII GATC 5 cut(s) 43, 250, 624, 658, 784
NheI GCTAGC 1 cut(s) 358
NlaIII CATG 8 cut(s) 15, 72, 95, 192, 239, 484, 686, 692
NlaIV GGNNCC 3 cut(s) 20, 21, 177
NspI RCATGY 2 cut(s) 72, 686
PagI TCATGA 2 cut(s) 480, 688
PciI ACATGT 1 cut(s) 682
PfeI GAWTC 3 cut(s) 239, 345, 711
PkrI GCNGC 3 cut(s) 100, 151, 471
PpuMI RGGWCCY 2 cut(s) 19, 30
PscI ACATGT 1 cut(s) 682
Psp5II RGGWCCY 2 cut(s) 19, 30
Psp6I CCWGG 1 cut(s) 214
PspGI CCWGG 1 cut(s) 214
PspN4I GGNNCC 3 cut(s) 20, 21, 177
PspPI GGNCC 4 cut(s) 19, 30, 88, 175
PspPPI RGGWCCY 2 cut(s) 19, 30
PstI CTGCAG 1 cut(s) 327
PstNI CAGNNNCTG 2 cut(s) 158, 368
PsuI RGATCY 1 cut(s) 250
RsaI GTAC 3 cut(s) 83, 136, 378
RsaNI GTAC 3 cut(s) 82, 135, 377
RseI CAYNNNNRTG 1 cut(s) 687
SaqAI TTAA 6 cut(s) 105, 297, 435, 588, 606, 753
SatI GCNGC 3 cut(s) 99, 150, 470
Sau3AI GATC 5 cut(s) 43, 250, 624, 658, 784
Sau96I GGNCC 4 cut(s) 19, 30, 88, 175
ScrFI CCNGG 2 cut(s) 120, 216
SfaNI GCATC 1 cut(s) 568
SfcI CTRYAG 1 cut(s) 323
SinI GGWCC 2 cut(s) 19, 30
SmiMI CAYNNNNRTG 1 cut(s) 687
Sse9I AATT 6 cut(s) 182, 437, 572, 749, 758, 779
SspI AATATT 1 cut(s) 433
SspMI CTAG 4 cut(s) 60, 210, 359, 732
StyD4I CCNGG 2 cut(s) 118, 214
StyI CCWWGG 1 cut(s) 333
TaaI ACNGT 2 cut(s) 370, 376
TasI AATT 6 cut(s) 182, 437, 572, 749, 758, 779
TatI WGTACW 3 cut(s) 81, 134, 376
TfiI GAWTC 3 cut(s) 239, 345, 711
Tru1I TTAA 6 cut(s) 105, 297, 435, 588, 606, 753
Tru9I TTAA 6 cut(s) 105, 297, 435, 588, 606, 753
TscAI CASTG 1 cut(s) 373
TseI GCWGC 3 cut(s) 98, 149, 469
TspDTI ATGAA 6 cut(s) 108, 159, 252, 469, 677, 792
TspGWI ACGGA 1 cut(s) 535
TspRI CASTG 1 cut(s) 373
VpaK11BI GGWCC 2 cut(s) 19, 30
XapI RAATTY 2 cut(s) 749, 779
XceI RCATGY 2 cut(s) 72, 686
XspI CTAG 4 cut(s) 60, 210, 359, 732
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.