Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0006425

Physical Location & Seq

Genomic Coordinates Reverse (-)

4491934 .. 4492767

Gene Structure 834 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G005430.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

ATGATTGACCAAGAGGTGTTGAAGGAGTGCGTCGATGGAGTTGGAAACCGGACACCTGAGGTAGAAGCCCCTACCCATCATTCTCCCACCTTGATCCAGCTTTTCCCCAATTTGTCCTATCGGCTGCGACGCCAGGGAGTGCCAAATGGTCGTCTAATCCGCATTCAATTGTGGCCTCCTCCTCCGCCCCGGGATGATTATAGGGCTACTGTGAGGTATATAGAATACACAATAAGTCAACTTAAGAATGGAATCGTTTCACAACAAATGGTAGATTCGGCTAAGGAAACGGTACGCCGCCTTAGATCGAAAGGATATTCCAACTTAGATGAGGATGAAGCAATCACTCTAAAGGACAGCATTCACTTCCTTGGTAGGCTAGAAAGCACCCCCTCTTCCTTTAGGGAGAGGTTTCTTAAACTTGCTGAAGACATTCCAAGCGGTGTCTGCTGCCTCCGTCAAATGCAGGAAACATTGATTGATCAGCCAAATCTTGTAGAGCAAGAGAGACAATGCATAGCCGAAATTCAGAACAGAATGCAAGCCCACGCTCTAAGAAATCAACAGTTTGATGAGGAAGAAGTGACGGTCACTTGTGAGAGGGCTAAGAGAGAAGAGGAGAAAGAGGTTCTAATCACCAGATTGGAGGACATTCGCCGCATTGTGACTGAAACTTCCACAGCCTTGTCTTATATAGATGGTGGGAGGATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

237

Amino Acids

27.42

Weight (kDa)

5.57

Isoelectric Point (pI)

50.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006425)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0455531 RchiOBHm_Chr3g0455581 RchiOBHm_Chr5g0002701 RchiOBHm_Chr6g0248951
rosa_laevigata	RLG00000025338
rosa_multiflora	Rmu_co8241263.1_g000001 Rmu_sc0006994.1_g000001 Rmu_sc0009084.1_g000018
rosa_roxburghii	Rroxscaffold_1G00073180 Rroxscaffold_6G00423550 Rroxscaffold_6G00424060 Rroxscaffold_6G00424070
rosa_rugosa	Rorug03G0008400 Rorug03G0008400 Rorug04G0398400
rosa_samantha	Rh3DG071500 Rh3DG071600 Rh4CG231700 Rh5AG021700 Rh5BG024600 Rh5BG366200 Rh5CG024000 Rh5DG023000 Rh6AG051900
rosa_wichuraiana	Rw3G005400 Rw3G005430 Rw5G002020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	5 cut(s)	160, 185, 298, 441, 658
AclWI	GGATC	1 cut(s)	88
AcsI	RAATTY	1 cut(s)	525
AcuI	CTGAAG	1 cut(s)	447
AcyI	GRCGYC	1 cut(s)	130
AfaI	GTAC	1 cut(s)	294
AflII	CTTAAG	1 cut(s)	242
AgsI	TTSAA	2 cut(s)	22, 167
AjnI	CCWGG	1 cut(s)	132
AluBI	AGCT	1 cut(s)	100
AluI	AGCT	1 cut(s)	100
Alw26I	GTCTC	1 cut(s)	502
AlwI	GGATC	1 cut(s)	88
Ama87I	CYCGRG	1 cut(s)	189
AoxI	GGCC	1 cut(s)	173
ApeKI	GCWGC	2 cut(s)	124, 450
ApoI	RAATTY	1 cut(s)	525
Asp700I	GAANNNNTTC	2 cut(s)	256, 432
AsuC2I	CCSGG	2 cut(s)	190, 191
AsuHPI	GGTGA	1 cut(s)	628
AvaI	CYCGRG	1 cut(s)	189
AxyI	CCTNAGG	1 cut(s)	57
BbsI	GAAGAC	1 cut(s)	435
BbvI	GCAGC	2 cut(s)	111, 437
BccI	CCATC	3 cut(s)	29, 84, 692
BciT130I	CCWGG	1 cut(s)	134
BclI	TGATCA	1 cut(s)	481
BcnI	CCSGG	2 cut(s)	190, 191
BcoDI	GTCTC	1 cut(s)	502
BfaI	CTAG	1 cut(s)	380
BfrI	CTTAAG	1 cut(s)	242
BisI	GCNGC	4 cut(s)	125, 298, 451, 658
BlsI	GCNGC	4 cut(s)	126, 299, 452, 659
Bme1390I	CCNGG	3 cut(s)	134, 190, 191
BmeT110I	CYCGRG	1 cut(s)	189
BmrFI	CCNGG	3 cut(s)	134, 190, 191
BpiI	GAAGAC	1 cut(s)	435
Bpu10I	CCTNAGC	1 cut(s)	282
BpuMI	CCSGG	2 cut(s)	190, 191
BsaHI	GRCGYC	1 cut(s)	130
BsaJI	CCNNGG	4 cut(s)	133, 188, 189, 370
BsaWI	WCCGGW	1 cut(s)	48
Bse21I	CCTNAGG	1 cut(s)	57
BseBI	CCWGG	1 cut(s)	134
BseDI	CCNNGG	4 cut(s)	133, 188, 189, 370
BseGI	GGATG	2 cut(s)	199, 340
BseMII	CTCAG	1 cut(s)	48
BseRI	GAGGAG	3 cut(s)	168, 171, 632
BseXI	GCAGC	2 cut(s)	111, 437
BshFI	GGCC	1 cut(s)	175
BsiHKCI	CYCGRG	1 cut(s)	189
BsiSI	CCGG	2 cut(s)	49, 190
BsmAI	GTCTC	1 cut(s)	502
BsmI	GAATGC	3 cut(s)	162, 360, 543
BsnI	GGCC	1 cut(s)	175
BsoBI	CYCGRG	1 cut(s)	189
Bsp143I	GATC	4 cut(s)	93, 305, 481, 708
BspACI	CCGC	5 cut(s)	160, 185, 298, 441, 658
BspANI	GGCC	1 cut(s)	175
BspCNI	CTCAG	1 cut(s)	49
BspMI	ACCTGC	1 cut(s)	330
BspPI	GGATC	1 cut(s)	88
BspTI	CTTAAG	1 cut(s)	242
BssECI	CCNNGG	4 cut(s)	133, 188, 189, 370
BssMI	GATC	4 cut(s)	93, 305, 481, 708
BssNI	GRCGYC	1 cut(s)	130
BssT1I	CCWWGG	1 cut(s)	370
Bst2UI	CCWGG	1 cut(s)	134
Bst4CI	ACNGT	4 cut(s)	211, 292, 567, 589
Bst6I	CTCTTC	2 cut(s)	400, 609
BstACI	GRCGYC	1 cut(s)	130
BstAFI	CTTAAG	1 cut(s)	242
BstC8I	GCNNGC	1 cut(s)	543
BstDEI	CTNAG	6 cut(s)	57, 282, 302, 325, 554, 606
BstF5I	GGATG	2 cut(s)	199, 340
BstKTI	GATC	4 cut(s)	96, 308, 484, 711
BstMAI	GTCTC	1 cut(s)	502
BstMBI	GATC	4 cut(s)	93, 305, 481, 708
BstMWI	GCNNNNNNNGC	1 cut(s)	447
BstNI	CCWGG	1 cut(s)	134
BstSCI	CCNGG	3 cut(s)	132, 188, 189
BstV1I	GCAGC	2 cut(s)	111, 437
BstV2I	GAAGAC	1 cut(s)	435
BstX2I	RGATCY	1 cut(s)	708
BstYI	RGATCY	1 cut(s)	708
Bsu36I	CCTNAGG	1 cut(s)	57
BsuRI	GGCC	1 cut(s)	175
BtsCI	GGATG	2 cut(s)	199, 340
Cac8I	GCNNGC	1 cut(s)	543
Cfr9I	CCCGGG	1 cut(s)	189
CseI	GACGC	2 cut(s)	19, 138
Csp6I	GTAC	1 cut(s)	293
CviQI	GTAC	1 cut(s)	293
DdeI	CTNAG	6 cut(s)	57, 282, 302, 325, 554, 606
DpnI	GATC	4 cut(s)	95, 307, 483, 710
DpnII	GATC	4 cut(s)	93, 305, 481, 708
Eam1104I	CTCTTC	2 cut(s)	400, 609
EarI	CTCTTC	2 cut(s)	400, 609
EciI	GGCGGA	1 cut(s)	174
Eco130I	CCWWGG	1 cut(s)	370
Eco57I	CTGAAG	1 cut(s)	447
Eco81I	CCTNAGG	1 cut(s)	57
Eco88I	CYCGRG	1 cut(s)	189
EcoRII	CCWGG	1 cut(s)	132
EcoT14I	CCWWGG	1 cut(s)	370
EcoT22I	ATGCAT	1 cut(s)	518
ErhI	CCWWGG	1 cut(s)	370
FaiI	YATR	6 cut(s)	201, 219, 221, 518, 693, 695
FbaI	TGATCA	1 cut(s)	481
Fnu4HI	GCNGC	4 cut(s)	125, 298, 451, 658
FokI	GGATG	2 cut(s)	206, 347
Fsp4HI	GCNGC	4 cut(s)	125, 298, 451, 658
FspBI	CTAG	1 cut(s)	380
GluI	GCNGC	4 cut(s)	125, 298, 451, 658
HaeIII	GGCC	1 cut(s)	175
HapII	CCGG	2 cut(s)	49, 190
HgaI	GACGC	2 cut(s)	19, 138
Hin1I	GRCGYC	1 cut(s)	130
HincII	GTYRAC	1 cut(s)	239
HindII	GTYRAC	1 cut(s)	239
HinfI	GANTC	2 cut(s)	252, 275
HpaII	CCGG	2 cut(s)	49, 190
HphI	GGTGA	1 cut(s)	628
Hpy166II	GTNNAC	1 cut(s)	239
Hpy188I	TCNGA	2 cut(s)	531, 713
Hpy8I	GTNNAC	1 cut(s)	239
Hpy99I	CGWCG	2 cut(s)	35, 132
HpyAV	CCTTC	1 cut(s)	16
HpyCH4III	ACNGT	4 cut(s)	211, 292, 567, 589
HpyCH4V	TGCA	3 cut(s)	466, 516, 541
HpyF10VI	GCNNNNNNNGC	1 cut(s)	447
HpyF3I	CTNAG	6 cut(s)	57, 282, 302, 325, 554, 606
Hsp92I	GRCGYC	1 cut(s)	130
Ksp22I	TGATCA	1 cut(s)	481
Kzo9I	GATC	4 cut(s)	93, 305, 481, 708
LpnPI	CCDG	8 cut(s)	62, 69, 110, 119, 146, 203, 452, 652
Lsp1109I	GCAGC	2 cut(s)	111, 437
MaeI	CTAG	1 cut(s)	380
MaeIII	GTNAC	3 cut(s)	583, 589, 664
MalI	GATC	4 cut(s)	95, 307, 483, 710
MboI	GATC	4 cut(s)	93, 305, 481, 708
MboII	GAAGA	4 cut(s)	387, 440, 590, 626
MfeI	CAATTG	1 cut(s)	167
MflI	RGATCY	1 cut(s)	708
MluCI	AATT	3 cut(s)	109, 167, 525
MmeI	TCCRAC	2 cut(s)	22, 345
Mph1103I	ATGCAT	1 cut(s)	518
MroXI	GAANNNNTTC	2 cut(s)	256, 432
MseI	TTAA	2 cut(s)	243, 417
MspCI	CTTAAG	1 cut(s)	242
MspI	CCGG	2 cut(s)	49, 190
MspR9I	CCNGG	3 cut(s)	134, 190, 191
MunI	CAATTG	1 cut(s)	167
Mva1269I	GAATGC	3 cut(s)	162, 360, 543
MvaI	CCWGG	1 cut(s)	134
MwoI	GCNNNNNNNGC	1 cut(s)	447
NciI	CCSGG	2 cut(s)	190, 191
NdeII	GATC	4 cut(s)	93, 305, 481, 708
NmuCI	GTSAC	3 cut(s)	583, 589, 664
NsiI	ATGCAT	1 cut(s)	518
PctI	GAATGC	3 cut(s)	162, 360, 543
PdmI	GAANNNNTTC	2 cut(s)	256, 432
PfeI	GAWTC	2 cut(s)	252, 275
PkrI	GCNGC	4 cut(s)	126, 299, 452, 659
Psp6I	CCWGG	1 cut(s)	132
PspGI	CCWGG	1 cut(s)	132
PsuI	RGATCY	1 cut(s)	708
RsaI	GTAC	1 cut(s)	294
RsaNI	GTAC	1 cut(s)	293
SaqAI	TTAA	2 cut(s)	243, 417
SatI	GCNGC	4 cut(s)	125, 298, 451, 658
Sau3AI	GATC	4 cut(s)	93, 305, 481, 708
ScrFI	CCNGG	3 cut(s)	134, 190, 191
SetI	ASST	8 cut(s)	18, 58, 63, 92, 102, 218, 413, 630
SmaI	CCCGGG	1 cut(s)	191
SmlI	CTYRAG	1 cut(s)	242
SmoI	CTYRAG	1 cut(s)	242
Sse9I	AATT	3 cut(s)	109, 167, 525
SsiI	CCGC	5 cut(s)	160, 185, 298, 441, 658
SspMI	CTAG	1 cut(s)	380
StyD4I	CCNGG	3 cut(s)	132, 188, 189
StyI	CCWWGG	1 cut(s)	370
TaaI	ACNGT	4 cut(s)	211, 292, 567, 589
TaqI	TCGA	2 cut(s)	33, 308
TasI	AATT	3 cut(s)	109, 167, 525
TauI	GCSGC	2 cut(s)	300, 660
TfiI	GAWTC	2 cut(s)	252, 275
Tru1I	TTAA	2 cut(s)	243, 417
Tru9I	TTAA	2 cut(s)	243, 417
TseFI	GTSAC	3 cut(s)	583, 589, 664
TseI	GCWGC	2 cut(s)	124, 450
Tsp45I	GTSAC	3 cut(s)	583, 589, 664
TspDTI	ATGAA	1 cut(s)	351
TspGWI	ACGGA	1 cut(s)	446
TspMI	CCCGGG	1 cut(s)	189
Vha464I	CTTAAG	1 cut(s)	242
XapI	RAATTY	1 cut(s)	525
XmaI	CCCGGG	1 cut(s)	189
XmnI	GAANNNNTTC	2 cut(s)	256, 432
XspI	CTAG	1 cut(s)	380
Zsp2I	ATGCAT	1 cut(s)	518

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.