Rh4CG231700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0006425
Physical Location & Seq
Forward (+)
47055239 .. 47058562
3324 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG231700.1

Sequence Viewer

Length: 348 bp
ATGGAGGACTTGGAAGAAGCTTATAGTATACAGACCCAATTGGATGCAAAAGTTAATGATATTGAGGCGCTTAATATCAAGTTGGAAGAGATCAATGCTGGAAGAGAAAAAGATAAAAGTGAGGATCAGGAAGACTTGACAGCTTTACTTGTGCATGAGAAAAAGATAAACAACAGATTCAAGAAGATGGAGTTGGCTAGGAAAGTTCAATCAGAATTTGACGAATTTGATCGCCTTGAGCTCCTCCTACCTCCCATTGCTCCGGCCTCCTTCGCTCTCCCATTGCTCAGGCACTTCACAGTACTTTTTGTTTCCTCCCACGAGTACCAAAGATGTGAGCCACAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

115

Amino Acids

13.41

Weight (kDa)

4.8

Isoelectric Point (pI)

52.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 28
AclWI GGATC 1 cut(s) 132
AcsI RAATTY 2 cut(s) 215, 224
AfaI GTAC 2 cut(s) 303, 326
AgsI TTSAA 2 cut(s) 181, 209
AjuI GAANNNNNNNTTGG 2 cut(s) 176, 208
AluBI AGCT 3 cut(s) 20, 143, 241
AluI AGCT 3 cut(s) 20, 143, 241
Alw21I GWGCWC 1 cut(s) 243
AlwI GGATC 1 cut(s) 132
AoxI GGCC 1 cut(s) 264
ApoI RAATTY 2 cut(s) 215, 224
AspLEI GCGC 1 cut(s) 70
BanII GRGCYC 1 cut(s) 243
BauI CACGAG 1 cut(s) 320
BbsI GAAGAC 1 cut(s) 138
Bbv12I GWGCWC 1 cut(s) 243
BccI CCATC 1 cut(s) 181
BfaI CTAG 1 cut(s) 198
BfoI RGCGCY 1 cut(s) 71
BmcAI AGTACT 1 cut(s) 303
BmsI GCATC 1 cut(s) 34
BpiI GAAGAC 1 cut(s) 138
Bpu10I CCTNAGC 1 cut(s) 287
BpuEI CTTGAG 1 cut(s) 257
Bse3DI GCAATG 2 cut(s) 255, 281
BseGI GGATG 1 cut(s) 49
BseMI GCAATG 2 cut(s) 255, 281
BseMII CTCAG 1 cut(s) 301
BseRI GAGGAG 1 cut(s) 233
BshFI GGCC 1 cut(s) 266
BsiHKAI GWGCWC 1 cut(s) 243
BsiSI CCGG 1 cut(s) 263
BsnI GGCC 1 cut(s) 266
Bsp1286I GDGCHC 1 cut(s) 243
Bsp143I GATC 3 cut(s) 90, 124, 229
BspANI GGCC 1 cut(s) 266
BspCNI CTCAG 1 cut(s) 300
BspPI GGATC 1 cut(s) 132
BsrDI GCAATG 2 cut(s) 255, 281
BssMI GATC 3 cut(s) 90, 124, 229
BssNAI GTATAC 1 cut(s) 29
BssSI CACGAG 1 cut(s) 320
Bst1107I GTATAC 1 cut(s) 29
Bst2BI CACGAG 1 cut(s) 320
Bst4CI ACNGT 2 cut(s) 301, 345
Bst6I CTCTTC 2 cut(s) 81, 97
BstDEI CTNAG 1 cut(s) 287
BstF5I GGATG 1 cut(s) 49
BstH2I RGCGCY 1 cut(s) 71
BstHHI GCGC 1 cut(s) 70
BstKTI GATC 3 cut(s) 93, 127, 232
BstMBI GATC 3 cut(s) 90, 124, 229
BstMWI GCNNNNNNNGC 1 cut(s) 272
BstV2I GAAGAC 1 cut(s) 138
BstZ17I GTATAC 1 cut(s) 29
BsuRI GGCC 1 cut(s) 266
BtsCI GGATG 1 cut(s) 49
CfoI GCGC 1 cut(s) 70
Csp6I GTAC 2 cut(s) 302, 325
CviAII CATG 1 cut(s) 155
CviJI RGCY 6 cut(s) 20, 143, 197, 241, 266, 340
CviKI_1 RGCY 6 cut(s) 20, 143, 197, 241, 266, 340
CviQI GTAC 2 cut(s) 302, 325
DdeI CTNAG 1 cut(s) 287
DpnI GATC 3 cut(s) 92, 126, 231
DpnII GATC 3 cut(s) 90, 124, 229
Eam1104I CTCTTC 2 cut(s) 81, 97
EarI CTCTTC 2 cut(s) 81, 97
Ecl136II GAGCTC 1 cut(s) 241
Eco24I GRGCYC 1 cut(s) 243
Eco53kI GAGCTC 1 cut(s) 241
EcoICRI GAGCTC 1 cut(s) 241
EcoT38I GRGCYC 1 cut(s) 243
FaeI CATG 1 cut(s) 158
FaiI YATR 3 cut(s) 24, 29, 156
FatI CATG 1 cut(s) 154
FblI GTMKAC 1 cut(s) 28
FokI GGATG 1 cut(s) 56
FriOI GRGCYC 1 cut(s) 243
FspBI CTAG 1 cut(s) 198
GlaI GCGC 1 cut(s) 69
HaeII RGCGCY 1 cut(s) 71
HaeIII GGCC 1 cut(s) 266
HapII CCGG 1 cut(s) 263
HhaI GCGC 1 cut(s) 70
Hin1II CATG 1 cut(s) 158
Hin6I GCGC 1 cut(s) 68
HinP1I GCGC 1 cut(s) 68
HindIII AAGCTT 1 cut(s) 18
HinfI GANTC 1 cut(s) 177
HpaII CCGG 1 cut(s) 263
Hpy166II GTNNAC 1 cut(s) 29
Hpy188I TCNGA 1 cut(s) 214
Hpy188III TCNNGA 2 cut(s) 128, 181
Hpy8I GTNNAC 1 cut(s) 29
HpyAV CCTTC 1 cut(s) 280
HpyCH4III ACNGT 2 cut(s) 301, 345
HpyCH4V TGCA 2 cut(s) 47, 154
HpyF10VI GCNNNNNNNGC 1 cut(s) 272
HpyF3I CTNAG 1 cut(s) 287
Hsp92II CATG 1 cut(s) 158
HspAI GCGC 1 cut(s) 68
Kzo9I GATC 3 cut(s) 90, 124, 229
LmnI GCTCC 2 cut(s) 246, 265
LpnPI CCDG 4 cut(s) 84, 113, 274, 276
LweI GCATC 1 cut(s) 34
MaeI CTAG 1 cut(s) 198
MalI GATC 3 cut(s) 92, 126, 231
MboI GATC 3 cut(s) 90, 124, 229
MboII GAAGA 5 cut(s) 26, 98, 114, 143, 196
MfeI CAATTG 1 cut(s) 38
MhlI GDGCHC 1 cut(s) 243
MluCI AATT 3 cut(s) 38, 215, 224
MmeI TCCRAC 1 cut(s) 63
MnlI CCTC 6 cut(s) 58, 115, 254, 261, 277, 325
MseI TTAA 2 cut(s) 54, 72
MspI CCGG 1 cut(s) 263
MunI CAATTG 1 cut(s) 38
MwoI GCNNNNNNNGC 1 cut(s) 272
NdeII GATC 3 cut(s) 90, 124, 229
NlaIII CATG 1 cut(s) 158
PfeI GAWTC 1 cut(s) 177
Psp124BI GAGCTC 1 cut(s) 243
RsaI GTAC 2 cut(s) 303, 326
RsaNI GTAC 2 cut(s) 302, 325
SacI GAGCTC 1 cut(s) 243
SaqAI TTAA 2 cut(s) 54, 72
Sau3AI GATC 3 cut(s) 90, 124, 229
ScaI AGTACT 1 cut(s) 303
SduI GDGCHC 1 cut(s) 243
SetI ASST 4 cut(s) 22, 145, 243, 253
SfaNI GCATC 1 cut(s) 34
SmlI CTYRAG 1 cut(s) 236
SmoI CTYRAG 1 cut(s) 236
Sse9I AATT 3 cut(s) 38, 215, 224
SspMI CTAG 1 cut(s) 198
SstI GAGCTC 1 cut(s) 243
TaaI ACNGT 2 cut(s) 301, 345
TasI AATT 3 cut(s) 38, 215, 224
TatI WGTACW 1 cut(s) 301
TfiI GAWTC 1 cut(s) 177
Tru1I TTAA 2 cut(s) 54, 72
Tru9I TTAA 2 cut(s) 54, 72
XapI RAATTY 2 cut(s) 215, 224
XmiI GTMKAC 1 cut(s) 28
XspI CTAG 1 cut(s) 198
ZrmI AGTACT 1 cut(s) 303
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.