RLG00000025338

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0006425
Physical Location & Seq
Forward (+)
45129707 .. 45130237
531 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000025338

Sequence Viewer

Length: 459 bp
ATGGTAGATTGGGCTAAGGAAACGGTACGCCACCTTAGATCGAAAGGATATTCTAACTTAGATGAGGATGAAACAATCACTCTAAAGGACAACATTCACTTCCTTGGTAGGCTAGAAAGCACCCTCTCTTCCTTTAGGGAGAGATTTCTTAACTTTGTTGAAGACATTCCAAGCCGTGTCCGCTGCCTCCGTCAAATGCAGGAAACATTGATTGATCAGCCAAATCTTGTAGAGCAAGAGAGACAATGCATAGCCGAAATTCAGAACAGAATGCAAGCCCGCGCTCTAAGAAACCAACAGTTTGATGAGGAAGAAGTGACGGTCACTTGTGATAGGGCTAATAGAGAAGAGGAGAAAGAGGTTCTAATCACCAGATTGGAGGACATTCACCACAATGTGACTGAAACTTCCACAGCCTTGTCTGATATTGATGGAGGATATGGTTCCCCTTTTTACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

153

Amino Acids

17.86

Weight (kDa)

4.82

Isoelectric Point (pI)

52.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 282
AciI CCGC 2 cut(s) 181, 280
AcsI RAATTY 1 cut(s) 258
AdeI CACNNNGTG 1 cut(s) 397
AfaI GTAC 1 cut(s) 27
AgsI TTSAA 1 cut(s) 161
Alw26I GTCTC 1 cut(s) 235
ApeKI GCWGC 1 cut(s) 183
ApoI RAATTY 1 cut(s) 258
Asp700I GAANNNNTTC 1 cut(s) 165
AspLEI GCGC 1 cut(s) 284
AsuHPI GGTGA 2 cut(s) 361, 380
BbsI GAAGAC 1 cut(s) 168
BbvI GCAGC 1 cut(s) 170
BccI CCATC 1 cut(s) 425
BceAI ACGGC 1 cut(s) 159
BclI TGATCA 1 cut(s) 214
BcoDI GTCTC 1 cut(s) 235
BfaI CTAG 1 cut(s) 113
BisI GCNGC 1 cut(s) 184
BlsI GCNGC 1 cut(s) 185
BmiI GGNNCC 1 cut(s) 445
BpiI GAAGAC 1 cut(s) 168
Bpu10I CCTNAGC 1 cut(s) 15
BsaJI CCNNGG 1 cut(s) 103
BseDI CCNNGG 1 cut(s) 103
BseGI GGATG 1 cut(s) 73
BseRI GAGGAG 1 cut(s) 365
BseXI GCAGC 1 cut(s) 170
Bsh1236I CGCG 1 cut(s) 282
BsmAI GTCTC 1 cut(s) 235
BsmI GAATGC 1 cut(s) 276
Bsp143I GATC 2 cut(s) 38, 214
BspACI CCGC 2 cut(s) 181, 280
BspFNI CGCG 1 cut(s) 282
BspLI GGNNCC 1 cut(s) 445
BssECI CCNNGG 1 cut(s) 103
BssMI GATC 2 cut(s) 38, 214
BssT1I CCWWGG 1 cut(s) 103
Bst4CI ACNGT 3 cut(s) 25, 300, 322
Bst6I CTCTTC 2 cut(s) 133, 342
BstC8I GCNNGC 2 cut(s) 276, 280
BstDEI CTNAG 4 cut(s) 15, 35, 58, 287
BstF5I GGATG 1 cut(s) 73
BstFNI CGCG 1 cut(s) 282
BstHHI GCGC 1 cut(s) 284
BstKTI GATC 2 cut(s) 41, 217
BstMAI GTCTC 1 cut(s) 235
BstMBI GATC 2 cut(s) 38, 214
BstMWI GCNNNNNNNGC 1 cut(s) 180
BstUI CGCG 1 cut(s) 282
BstV1I GCAGC 1 cut(s) 170
BstV2I GAAGAC 1 cut(s) 168
BtsCI GGATG 1 cut(s) 73
Cac8I GCNNGC 2 cut(s) 276, 280
CfoI GCGC 1 cut(s) 284
Csp6I GTAC 1 cut(s) 26
CviJI RGCY 8 cut(s) 14, 112, 174, 220, 254, 278, 338, 416
CviKI_1 RGCY 8 cut(s) 14, 112, 174, 220, 254, 278, 338, 416
CviQI GTAC 1 cut(s) 26
DdeI CTNAG 4 cut(s) 15, 35, 58, 287
DpnI GATC 2 cut(s) 40, 216
DpnII GATC 2 cut(s) 38, 214
DraIII CACNNNGTG 1 cut(s) 397
Eam1104I CTCTTC 2 cut(s) 133, 342
EarI CTCTTC 2 cut(s) 133, 342
Eco130I CCWWGG 1 cut(s) 103
EcoT14I CCWWGG 1 cut(s) 103
EcoT22I ATGCAT 1 cut(s) 251
ErhI CCWWGG 1 cut(s) 103
FaiI YATR 2 cut(s) 251, 441
FauI CCCGC 1 cut(s) 287
FbaI TGATCA 1 cut(s) 214
Fnu4HI GCNGC 1 cut(s) 184
FokI GGATG 1 cut(s) 80
Fsp4HI GCNGC 1 cut(s) 184
FspBI CTAG 1 cut(s) 113
GlaI GCGC 1 cut(s) 283
GluI GCNGC 1 cut(s) 184
HhaI GCGC 1 cut(s) 284
Hin6I GCGC 1 cut(s) 282
HinP1I GCGC 1 cut(s) 282
HphI GGTGA 2 cut(s) 361, 380
Hpy188I TCNGA 2 cut(s) 264, 424
HpyCH4III ACNGT 3 cut(s) 25, 300, 322
HpyCH4V TGCA 3 cut(s) 199, 249, 274
HpyF10VI GCNNNNNNNGC 1 cut(s) 180
HpyF3I CTNAG 4 cut(s) 15, 35, 58, 287
HspAI GCGC 1 cut(s) 282
Ksp22I TGATCA 1 cut(s) 214
Kzo9I GATC 2 cut(s) 38, 214
LpnPI CCDG 2 cut(s) 185, 385
Lsp1109I GCAGC 1 cut(s) 170
MaeI CTAG 1 cut(s) 113
MaeIII GTNAC 3 cut(s) 316, 322, 397
MalI GATC 2 cut(s) 40, 216
MboI GATC 2 cut(s) 38, 214
MboII GAAGA 4 cut(s) 120, 173, 323, 359
MluCI AATT 1 cut(s) 258
MnlI CCTC 8 cut(s) 58, 134, 197, 301, 343, 352, 373, 428
Mph1103I ATGCAT 1 cut(s) 251
MroXI GAANNNNTTC 1 cut(s) 165
MseI TTAA 1 cut(s) 150
MslI CAYNNNNRTG 1 cut(s) 393
MspA1I CMGCKG 1 cut(s) 183
Mva1269I GAATGC 1 cut(s) 276
MvnI CGCG 1 cut(s) 282
MwoI GCNNNNNNNGC 1 cut(s) 180
NdeII GATC 2 cut(s) 38, 214
NlaIV GGNNCC 1 cut(s) 445
NmuCI GTSAC 3 cut(s) 316, 322, 397
NsiI ATGCAT 1 cut(s) 251
PctI GAATGC 1 cut(s) 276
PdmI GAANNNNTTC 1 cut(s) 165
PkrI GCNGC 1 cut(s) 185
PspN4I GGNNCC 1 cut(s) 445
RsaI GTAC 1 cut(s) 27
RsaNI GTAC 1 cut(s) 26
RseI CAYNNNNRTG 1 cut(s) 393
SaqAI TTAA 1 cut(s) 150
SatI GCNGC 1 cut(s) 184
Sau3AI GATC 2 cut(s) 38, 214
SetI ASST 2 cut(s) 36, 363
SmiMI CAYNNNNRTG 1 cut(s) 393
Sse9I AATT 1 cut(s) 258
SsiI CCGC 2 cut(s) 181, 280
SspMI CTAG 1 cut(s) 113
StyI CCWWGG 1 cut(s) 103
TaaI ACNGT 3 cut(s) 25, 300, 322
TaqI TCGA 1 cut(s) 41
TasI AATT 1 cut(s) 258
Tru1I TTAA 1 cut(s) 150
Tru9I TTAA 1 cut(s) 150
TseFI GTSAC 3 cut(s) 316, 322, 397
TseI GCWGC 1 cut(s) 183
Tsp45I GTSAC 3 cut(s) 316, 322, 397
TspDTI ATGAA 1 cut(s) 84
TspGWI ACGGA 1 cut(s) 179
XapI RAATTY 1 cut(s) 258
XmnI GAANNNNTTC 1 cut(s) 165
XspI CTAG 1 cut(s) 113
Zsp2I ATGCAT 1 cut(s) 251
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.