Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0006425

Physical Location & Seq

Genomic Coordinates Reverse (-)

4857149 .. 4862191

Gene Structure 5043 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG071500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1200 bp

ATGATTGACAAAGAGGTGTTGGAGGAGTGCGTTGATGGAGTTGGAAACCGAACACCTGAGGCACGCCAGGGAGTGCCAAATGGTCGTCTGATCCGCATTCAATTGTGGTCTCCTCCTCCGCCCCGTGATGATTATAGGGCTACTGTGATGTATATAGAATACACAATAAGTCAACTTAAGAATGGAATCGTTTCACAACAAATGGTAGATTGTGCTAAGGAAACGGTACGCCGCCTTAGATCGAAAGGATATTCCAGCTTAGATGAGGATGAAACAATCACTCTAAAGGATAGCATTCACTTCCTTGGTAGGCTAGAAAGCACCCCCTCTTTCTTTAGGGAGAGGTTTCTTAACTTTGCTGAAGACATTCCAAGCCGTGTCCGCTGCCTCCGTCAAATGCAGGAAGCATTGATTGATCAGCCAAATCTTGTAGAGCAAGAGAGACAATGCATAGCCAAAATTCAGAACAGAATGCAAGCCCGCGCTCTAAGAAACCAACAGTTTGATGAGGAAGAAGCGACGGTCACTTGTGAGAGGGCTAAGAGAGAAGAGGAGAAAGAGGTTCTAATCACCAGATTGGAGGACATTCGCCGCAATTTGTCCTATCGGCTGCCACGCCAGGGAGTTCCAAATGGTCGTCTAATCCGCATTCAATTGTGGCCTCCTCCTCCGCCCCGTGATGATTATAGGGCTACTGTGAGGTATATAGAATACACAATAAGTCAACTGAAGAATGGAATCGTTTCACAACAAATGGTAGATTCGGCTAAGGAAACGGTACGCCGCCTTAGATCGAAAGGATATTCCAACTTAGATGAGGATGAAGCAATCACTCTAAAGGACAGCATTCACTTCCTTGGTAGGCTAGAAAGCACCCCCTCTTCCTTTAGGGAGAGGTTTCTTAAATTTGCTGAAGACATTCCAAGCCGCGTCTGCTGCCTCCGTCAAATGCAGGAAACATTGATTGATCAGCCAAATCTTGTAGAGCAAGAGAGACAGTGCATAGCCGAAATTCAGAACAGAATGCAAGCCCACGCTCTAAGAAACCAACAGTTTGATGAGGAAGAAGTGACGGTCACTTGTGAGAGGGCTAAGAGGGAAGAGGAGAAAGAGGTTCTAATCACCAGATTGGAGGACATTCGCCGCAATGTGACTGAAACTTCCACAGCCTTGTCTTATATAGATGGTGGGAGGATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

399

Amino Acids

46.71

Weight (kDa)

5.8

Isoelectric Point (pI)

52.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006425)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0455531 RchiOBHm_Chr3g0455581 RchiOBHm_Chr5g0002701 RchiOBHm_Chr6g0248951
rosa_laevigata	RLG00000025338
rosa_multiflora	Rmu_co8241263.1_g000001 Rmu_sc0006994.1_g000001 Rmu_sc0009084.1_g000018
rosa_roxburghii	Rroxscaffold_1G00073180 Rroxscaffold_6G00423550 Rroxscaffold_6G00424060 Rroxscaffold_6G00424070
rosa_rugosa	Rorug03G0008400 Rorug03G0008400 Rorug04G0398400
rosa_samantha	Rh3DG071500 Rh3DG071600 Rh4CG231700 Rh5AG021700 Rh5BG024600 Rh5BG366200 Rh5CG024000 Rh5DG023000 Rh6AG051900
rosa_wichuraiana	Rw3G005400 Rw3G005430 Rw5G002020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	483, 930
AclWI	GGATC	1 cut(s)	85
AcsI	RAATTY	3 cut(s)	459, 905, 1011
AcuI	CTGAAG	3 cut(s)	381, 749, 933
AfaI	GTAC	2 cut(s)	228, 780
AfiI	CCNNNNNNNGG	1 cut(s)	620
AflII	CTTAAG	1 cut(s)	176
AgsI	TTSAA	2 cut(s)	101, 653
AjnI	CCWGG	2 cut(s)	66, 618
AluBI	AGCT	1 cut(s)	258
AluI	AGCT	1 cut(s)	258
Alw26I	GTCTC	3 cut(s)	114, 436, 988
AlwI	GGATC	1 cut(s)	85
AoxI	GGCC	1 cut(s)	659
ApeKI	GCWGC	3 cut(s)	384, 610, 936
ApoI	RAATTY	3 cut(s)	459, 905, 1011
Asp700I	GAANNNNTTC	4 cut(s)	190, 366, 742, 918
AspLEI	GCGC	1 cut(s)	485
AsuHPI	GGTGA	2 cut(s)	562, 1114
AxyI	CCTNAGG	1 cut(s)	57
BbsI	GAAGAC	2 cut(s)	369, 921
BbvI	GCAGC	3 cut(s)	371, 597, 923
BccI	CCATC	2 cut(s)	29, 1178
BceAI	ACGGC	1 cut(s)	360
BciT130I	CCWGG	2 cut(s)	68, 620
BclI	TGATCA	2 cut(s)	415, 967
BcoDI	GTCTC	3 cut(s)	114, 436, 988
BfaI	CTAG	2 cut(s)	314, 866
BfrI	CTTAAG	1 cut(s)	176
BisI	GCNGC	8 cut(s)	232, 385, 592, 611, 784, 928, 937, 1144
BlsI	GCNGC	8 cut(s)	233, 386, 593, 612, 785, 929, 938, 1145
Bme1390I	CCNGG	2 cut(s)	68, 620
BmrFI	CCNGG	2 cut(s)	68, 620
BpiI	GAAGAC	2 cut(s)	369, 921
Bpu10I	CCTNAGC	2 cut(s)	216, 768
BsaI	GGTCTC	1 cut(s)	114
BsaJI	CCNNGG	4 cut(s)	67, 304, 619, 856
Bsc4I	CCNNNNNNNGG	1 cut(s)	620
Bse21I	CCTNAGG	1 cut(s)	57
Bse3DI	GCAATG	1 cut(s)	1153
BseBI	CCWGG	2 cut(s)	68, 620
BseDI	CCNNGG	4 cut(s)	67, 304, 619, 856
BseGI	GGATG	2 cut(s)	274, 826
BseLI	CCNNNNNNNGG	1 cut(s)	620
BseMI	GCAATG	1 cut(s)	1153
BseMII	CTCAG	1 cut(s)	48
BseRI	GAGGAG	7 cut(s)	38, 102, 105, 566, 654, 657, 1118
BseXI	GCAGC	3 cut(s)	371, 597, 923
Bsh1236I	CGCG	2 cut(s)	483, 930
BshFI	GGCC	1 cut(s)	661
BslI	CCNNNNNNNGG	1 cut(s)	620
BsmAI	GTCTC	3 cut(s)	114, 436, 988
BsmI	GAATGC	6 cut(s)	96, 294, 477, 648, 846, 1029
BsnI	GGCC	1 cut(s)	661
Bso31I	GGTCTC	1 cut(s)	114
Bsp143I	GATC	6 cut(s)	90, 239, 415, 791, 967, 1194
BspANI	GGCC	1 cut(s)	661
BspCNI	CTCAG	1 cut(s)	49
BspFNI	CGCG	2 cut(s)	483, 930
BspPI	GGATC	1 cut(s)	85
BspTI	CTTAAG	1 cut(s)	176
BspTNI	GGTCTC	1 cut(s)	114
BsrDI	GCAATG	1 cut(s)	1153
BssECI	CCNNGG	4 cut(s)	67, 304, 619, 856
BssMI	GATC	6 cut(s)	90, 239, 415, 791, 967, 1194
BssT1I	CCWWGG	2 cut(s)	304, 856
Bst2UI	CCWGG	2 cut(s)	68, 620
Bst4CI	ACNGT	9 cut(s)	145, 226, 501, 523, 697, 778, 999, 1053, 1075
Bst6I	CTCTTC	3 cut(s)	543, 886, 1095
BstAFI	CTTAAG	1 cut(s)	176
BstC8I	GCNNGC	4 cut(s)	64, 477, 481, 1029
BstF5I	GGATG	2 cut(s)	274, 826
BstFNI	CGCG	2 cut(s)	483, 930
BstHHI	GCGC	1 cut(s)	485
BstKTI	GATC	6 cut(s)	93, 242, 418, 794, 970, 1197
BstMAI	GTCTC	3 cut(s)	114, 436, 988
BstMBI	GATC	6 cut(s)	90, 239, 415, 791, 967, 1194
BstMWI	GCNNNNNNNGC	3 cut(s)	381, 933, 936
BstNI	CCWGG	2 cut(s)	68, 620
BstSCI	CCNGG	2 cut(s)	66, 618
BstUI	CGCG	2 cut(s)	483, 930
BstV1I	GCAGC	3 cut(s)	371, 597, 923
BstV2I	GAAGAC	2 cut(s)	369, 921
BstX2I	RGATCY	1 cut(s)	1194
BstYI	RGATCY	1 cut(s)	1194
Bsu36I	CCTNAGG	1 cut(s)	57
BsuRI	GGCC	1 cut(s)	661
BtsCI	GGATG	2 cut(s)	274, 826
BtsIMutI	CAGTG	1 cut(s)	1004
Cac8I	GCNNGC	4 cut(s)	64, 477, 481, 1029
CfoI	GCGC	1 cut(s)	485
CseI	GACGC	1 cut(s)	919
Csp6I	GTAC	2 cut(s)	227, 779
CviQI	GTAC	2 cut(s)	227, 779
DpnI	GATC	6 cut(s)	92, 241, 417, 793, 969, 1196
DpnII	GATC	6 cut(s)	90, 239, 415, 791, 967, 1194
Eam1104I	CTCTTC	3 cut(s)	543, 886, 1095
EarI	CTCTTC	3 cut(s)	543, 886, 1095
EciI	GGCGGA	2 cut(s)	108, 660
Eco130I	CCWWGG	2 cut(s)	304, 856
Eco31I	GGTCTC	1 cut(s)	114
Eco57I	CTGAAG	3 cut(s)	381, 749, 933
Eco81I	CCTNAGG	1 cut(s)	57
EcoRII	CCWGG	2 cut(s)	66, 618
EcoT14I	CCWWGG	2 cut(s)	304, 856
EcoT22I	ATGCAT	1 cut(s)	452
ErhI	CCWWGG	2 cut(s)	304, 856
FauI	CCCGC	1 cut(s)	488
FbaI	TGATCA	2 cut(s)	415, 967
Fnu4HI	GCNGC	8 cut(s)	232, 385, 592, 611, 784, 928, 937, 1144
FokI	GGATG	2 cut(s)	281, 833
Fsp4HI	GCNGC	8 cut(s)	232, 385, 592, 611, 784, 928, 937, 1144
FspBI	CTAG	2 cut(s)	314, 866
GlaI	GCGC	1 cut(s)	484
GluI	GCNGC	8 cut(s)	232, 385, 592, 611, 784, 928, 937, 1144
HaeIII	GGCC	1 cut(s)	661
HgaI	GACGC	1 cut(s)	919
HhaI	GCGC	1 cut(s)	485
Hin6I	GCGC	1 cut(s)	483
HinP1I	GCGC	1 cut(s)	483
HincII	GTYRAC	2 cut(s)	173, 725
HindII	GTYRAC	2 cut(s)	173, 725
HinfI	GANTC	3 cut(s)	186, 738, 761
HphI	GGTGA	2 cut(s)	562, 1114
Hpy166II	GTNNAC	2 cut(s)	173, 725
Hpy188I	TCNGA	4 cut(s)	90, 465, 1017, 1199
Hpy8I	GTNNAC	2 cut(s)	173, 725
Hpy99I	CGWCG	1 cut(s)	523
HpyCH4III	ACNGT	9 cut(s)	145, 226, 501, 523, 697, 778, 999, 1053, 1075
HpyCH4V	TGCA	6 cut(s)	400, 450, 475, 952, 1002, 1027
HpyF10VI	GCNNNNNNNGC	3 cut(s)	381, 933, 936
HspAI	GCGC	1 cut(s)	483
Ksp22I	TGATCA	2 cut(s)	415, 967
Kzo9I	GATC	6 cut(s)	90, 239, 415, 791, 967, 1194
Lsp1109I	GCAGC	3 cut(s)	371, 597, 923
MaeI	CTAG	2 cut(s)	314, 866
MaeIII	GTNAC	4 cut(s)	523, 1069, 1075, 1150
MalI	GATC	6 cut(s)	92, 241, 417, 793, 969, 1196
MboI	GATC	6 cut(s)	90, 239, 415, 791, 967, 1194
MboII	GAAGA	8 cut(s)	374, 524, 560, 742, 873, 926, 1076, 1112
MfeI	CAATTG	2 cut(s)	101, 653
MflI	RGATCY	1 cut(s)	1194
MluCI	AATT	6 cut(s)	101, 459, 595, 653, 905, 1011
MmeI	TCCRAC	2 cut(s)	22, 831
Mph1103I	ATGCAT	1 cut(s)	452
MroXI	GAANNNNTTC	4 cut(s)	190, 366, 742, 918
MseI	TTAA	3 cut(s)	177, 351, 903
MspA1I	CMGCKG	1 cut(s)	384
MspCI	CTTAAG	1 cut(s)	176
MspR9I	CCNGG	2 cut(s)	68, 620
MunI	CAATTG	2 cut(s)	101, 653
Mva1269I	GAATGC	6 cut(s)	96, 294, 477, 648, 846, 1029
MvaI	CCWGG	2 cut(s)	68, 620
MvnI	CGCG	2 cut(s)	483, 930
MwoI	GCNNNNNNNGC	3 cut(s)	381, 933, 936
NdeII	GATC	6 cut(s)	90, 239, 415, 791, 967, 1194
NmuCI	GTSAC	4 cut(s)	523, 1069, 1075, 1150
NsiI	ATGCAT	1 cut(s)	452
PctI	GAATGC	6 cut(s)	96, 294, 477, 648, 846, 1029
PdmI	GAANNNNTTC	4 cut(s)	190, 366, 742, 918
PfeI	GAWTC	3 cut(s)	186, 738, 761
PkrI	GCNGC	8 cut(s)	233, 386, 593, 612, 785, 929, 938, 1145
Psp6I	CCWGG	2 cut(s)	66, 618
PspGI	CCWGG	2 cut(s)	66, 618
PsuI	RGATCY	1 cut(s)	1194
RsaI	GTAC	2 cut(s)	228, 780
RsaNI	GTAC	2 cut(s)	227, 779
SaqAI	TTAA	3 cut(s)	177, 351, 903
SatI	GCNGC	8 cut(s)	232, 385, 592, 611, 784, 928, 937, 1144
Sau3AI	GATC	6 cut(s)	90, 239, 415, 791, 967, 1194
ScrFI	CCNGG	2 cut(s)	68, 620
SetI	ASST	8 cut(s)	18, 58, 260, 347, 564, 704, 899, 1116
SmlI	CTYRAG	1 cut(s)	176
SmoI	CTYRAG	1 cut(s)	176
Sse9I	AATT	6 cut(s)	101, 459, 595, 653, 905, 1011
SspMI	CTAG	2 cut(s)	314, 866
StyD4I	CCNGG	2 cut(s)	66, 618
StyI	CCWWGG	2 cut(s)	304, 856
TaaI	ACNGT	9 cut(s)	145, 226, 501, 523, 697, 778, 999, 1053, 1075
TaqI	TCGA	2 cut(s)	242, 794
TasI	AATT	6 cut(s)	101, 459, 595, 653, 905, 1011
TauI	GCSGC	5 cut(s)	234, 594, 786, 930, 1146
TfiI	GAWTC	3 cut(s)	186, 738, 761
Tru1I	TTAA	3 cut(s)	177, 351, 903
Tru9I	TTAA	3 cut(s)	177, 351, 903
TscAI	CASTG	1 cut(s)	1004
TseFI	GTSAC	4 cut(s)	523, 1069, 1075, 1150
TseI	GCWGC	3 cut(s)	384, 610, 936
Tsp45I	GTSAC	4 cut(s)	523, 1069, 1075, 1150
TspDTI	ATGAA	2 cut(s)	285, 837
TspGWI	ACGGA	2 cut(s)	380, 932
TspRI	CASTG	1 cut(s)	1004
Vha464I	CTTAAG	1 cut(s)	176
XapI	RAATTY	3 cut(s)	459, 905, 1011
XmnI	GAANNNNTTC	4 cut(s)	190, 366, 742, 918
XspI	CTAG	2 cut(s)	314, 866
Zsp2I	ATGCAT	1 cut(s)	452

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.