RchiOBHm_Chr3g0455581

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0006425
Physical Location & Seq
Reverse (-)
5242689 .. 5245846
3158 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ42250

Sequence Viewer

Length: 1320 bp
ATGGCTTCATCATCGTATCGGTTTGGTATTGAACTTCAACAAGTTGAGCAAAGTATGATTGACCAAGAGGTGTTGAAGGAGTGCGTCGATGGAGTTGGAAACCGGACACCTGAGGTAGAAGCCCCTACCCATCATTCTCCCACCTTGATCCAGCTTTTCCCCAATTTGTCCTATCGGCTGCCACGCCAGGGAGTGCCAAATGGTCGTCTAATCCGCATTCAATTGTGGCCTCCTCCTCCGCCCCGTGATGATTATAGGGCTACTGTGAGGTATATAGAATACACAATAAGTCAACTTAAGAATGGAATCGTTTCACAACAAATGGTAGATTCGGCTAAGGAAACGGTACGCCGCCTTAGATCGAAAGGATATTCCAACTTAAATGAGGATGAAGCAATCACTCTAAAGGACAGCATTCACTTCCTTGGTAGGCTAGAAAGCACCCCCTCTTCCTTTAGGAGGAGGTTTCTTAAATTTGCTGAAGACATTCCAAGCCGTGTCCGCTGCCTCCGTCAAATGCAGGAAGCATTGATTGATCAGCCAAATCTTGTAGAGCAAGAGAGACAATGCATAGCCAAAATTCAGAACAGAATGCAAGCCCGCGCTCTAAGAAACCAACAGTTTGATGAGGAAGAAGCGACGGTCACTTGTGAGAGGGCTAAGAGAGAAGAGGAGAAAGAGGTTCTAATCACCAGATTGGAGGACATTCGCCGCAATTTGTCCTATCGGCTGCCACGCCAGGGAGTTCCAAATGGTCGTCTAATCCGCATTCAATTGTGGCCTCCTCCTCCGCCCCGTGATGATTATAGGGCTACTGTGAGGTATATAGAATACACAATAAGTCAACTTAAGAATGGAATCGTTTCACAACAAATGGTAGATTCGGCTAAGGAAACGGTACGCCGCCTTAGATCGAAAGGATATTCCAACTTAGATGAGGATGAAGCAATCACTCTAAAGGACAGCATTCACTTCCTTGGTAGGCTAGAAAGCACCCCCTCTTCCTTTAGGGAGAGGTTTCTTAAACTTGCTGAAGACATTCCAAGCGGTGTCTGCTGCCTCCGTCAAATGCAGGAAACATTGATTGATCAGCCAAATCTTGTAGAGCAAGAGAGACAATGCATAGCCGAAATTCAGAACAGAATGCAAGCCCACGCTCTAAGAAATCAACAGTTTGATGAGGAAGAAGTGACGGTCACTTGTGAGAGGGCTAAGAGAGAAGAGGAGAAAGAGGTTCTAATCACCAGATTGGAGGACATTCGCCGCATTGTGACTGAAACTTCCACAGCCTTGTCTTATATAGATGGTGGGAGGATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

439

Amino Acids

51.15

Weight (kDa)

6.99

Isoelectric Point (pI)

55.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 603
AclWI GGATC 1 cut(s) 142
AcsI RAATTY 3 cut(s) 473, 579, 1131
AcuI CTGAAG 2 cut(s) 501, 1053
AfaI GTAC 2 cut(s) 348, 900
AfiI CCNNNNNNNGG 3 cut(s) 188, 459, 740
AflII CTTAAG 2 cut(s) 296, 848
AgsI TTSAA 5 cut(s) 32, 38, 76, 221, 773
AjnI CCWGG 2 cut(s) 186, 738
AluBI AGCT 1 cut(s) 154
AluI AGCT 1 cut(s) 154
Alw26I GTCTC 2 cut(s) 556, 1108
AlwI GGATC 1 cut(s) 142
AoxI GGCC 2 cut(s) 227, 779
ApeKI GCWGC 4 cut(s) 178, 504, 730, 1056
ApoI RAATTY 3 cut(s) 473, 579, 1131
Asp700I GAANNNNTTC 4 cut(s) 310, 486, 862, 1038
AspLEI GCGC 1 cut(s) 605
AsuHPI GGTGA 2 cut(s) 682, 1234
AxyI CCTNAGG 1 cut(s) 111
BbsI GAAGAC 2 cut(s) 489, 1041
BbvI GCAGC 4 cut(s) 165, 491, 717, 1043
BccI CCATC 3 cut(s) 83, 138, 1298
BceAI ACGGC 1 cut(s) 480
BciT130I CCWGG 2 cut(s) 188, 740
BclI TGATCA 2 cut(s) 535, 1087
BcoDI GTCTC 2 cut(s) 556, 1108
BfaI CTAG 2 cut(s) 434, 986
BfrI CTTAAG 2 cut(s) 296, 848
BisI GCNGC 8 cut(s) 179, 352, 505, 712, 731, 904, 1057, 1264
BlsI GCNGC 8 cut(s) 180, 353, 506, 713, 732, 905, 1058, 1265
Bme1390I CCNGG 2 cut(s) 188, 740
BmrFI CCNGG 2 cut(s) 188, 740
BpiI GAAGAC 2 cut(s) 489, 1041
Bpu10I CCTNAGC 2 cut(s) 336, 888
BsaJI CCNNGG 4 cut(s) 187, 424, 739, 976
BsaWI WCCGGW 1 cut(s) 102
Bsc4I CCNNNNNNNGG 3 cut(s) 188, 459, 740
Bse21I CCTNAGG 1 cut(s) 111
BseBI CCWGG 2 cut(s) 188, 740
BseDI CCNNGG 4 cut(s) 187, 424, 739, 976
BseGI GGATG 2 cut(s) 394, 946
BseLI CCNNNNNNNGG 3 cut(s) 188, 459, 740
BseMII CTCAG 1 cut(s) 102
BseRI GAGGAG 7 cut(s) 222, 225, 475, 686, 774, 777, 1238
BseXI GCAGC 4 cut(s) 165, 491, 717, 1043
Bsh1236I CGCG 1 cut(s) 603
BshFI GGCC 2 cut(s) 229, 781
BsiSI CCGG 1 cut(s) 103
BslI CCNNNNNNNGG 3 cut(s) 188, 459, 740
BsmAI GTCTC 2 cut(s) 556, 1108
BsmI GAATGC 6 cut(s) 216, 414, 597, 768, 966, 1149
BsnI GGCC 2 cut(s) 229, 781
Bsp143I GATC 6 cut(s) 147, 359, 535, 911, 1087, 1314
BspANI GGCC 2 cut(s) 229, 781
BspCNI CTCAG 1 cut(s) 103
BspFNI CGCG 1 cut(s) 603
BspPI GGATC 1 cut(s) 142
BspTI CTTAAG 2 cut(s) 296, 848
BssECI CCNNGG 4 cut(s) 187, 424, 739, 976
BssMI GATC 6 cut(s) 147, 359, 535, 911, 1087, 1314
BssT1I CCWWGG 2 cut(s) 424, 976
Bst2UI CCWGG 2 cut(s) 188, 740
Bst4CI ACNGT 8 cut(s) 265, 346, 621, 643, 817, 898, 1173, 1195
Bst6I CTCTTC 4 cut(s) 454, 663, 1006, 1215
BstAFI CTTAAG 2 cut(s) 296, 848
BstC8I GCNNGC 3 cut(s) 597, 601, 1149
BstENI CCTNNNNNAGG 1 cut(s) 457
BstF5I GGATG 2 cut(s) 394, 946
BstFNI CGCG 1 cut(s) 603
BstHHI GCGC 1 cut(s) 605
BstKTI GATC 6 cut(s) 150, 362, 538, 914, 1090, 1317
BstMAI GTCTC 2 cut(s) 556, 1108
BstMBI GATC 6 cut(s) 147, 359, 535, 911, 1087, 1314
BstMWI GCNNNNNNNGC 2 cut(s) 501, 1053
BstNI CCWGG 2 cut(s) 188, 740
BstSCI CCNGG 2 cut(s) 186, 738
BstUI CGCG 1 cut(s) 603
BstV1I GCAGC 4 cut(s) 165, 491, 717, 1043
BstV2I GAAGAC 2 cut(s) 489, 1041
BstX2I RGATCY 1 cut(s) 1314
BstYI RGATCY 1 cut(s) 1314
Bsu36I CCTNAGG 1 cut(s) 111
BsuRI GGCC 2 cut(s) 229, 781
BtsCI GGATG 2 cut(s) 394, 946
Cac8I GCNNGC 3 cut(s) 597, 601, 1149
CfoI GCGC 1 cut(s) 605
CseI GACGC 1 cut(s) 73
Csp6I GTAC 2 cut(s) 347, 899
CviQI GTAC 2 cut(s) 347, 899
DpnI GATC 6 cut(s) 149, 361, 537, 913, 1089, 1316
DpnII GATC 6 cut(s) 147, 359, 535, 911, 1087, 1314
Eam1104I CTCTTC 4 cut(s) 454, 663, 1006, 1215
EarI CTCTTC 4 cut(s) 454, 663, 1006, 1215
EciI GGCGGA 2 cut(s) 228, 780
Eco130I CCWWGG 2 cut(s) 424, 976
Eco57I CTGAAG 2 cut(s) 501, 1053
Eco81I CCTNAGG 1 cut(s) 111
EcoNI CCTNNNNNAGG 1 cut(s) 457
EcoRII CCWGG 2 cut(s) 186, 738
EcoT14I CCWWGG 2 cut(s) 424, 976
EcoT22I ATGCAT 2 cut(s) 572, 1124
ErhI CCWWGG 2 cut(s) 424, 976
FauI CCCGC 1 cut(s) 608
FbaI TGATCA 2 cut(s) 535, 1087
Fnu4HI GCNGC 8 cut(s) 179, 352, 505, 712, 731, 904, 1057, 1264
FokI GGATG 2 cut(s) 401, 953
Fsp4HI GCNGC 8 cut(s) 179, 352, 505, 712, 731, 904, 1057, 1264
FspBI CTAG 2 cut(s) 434, 986
GlaI GCGC 1 cut(s) 604
GluI GCNGC 8 cut(s) 179, 352, 505, 712, 731, 904, 1057, 1264
HaeIII GGCC 2 cut(s) 229, 781
HapII CCGG 1 cut(s) 103
HgaI GACGC 1 cut(s) 73
HhaI GCGC 1 cut(s) 605
Hin6I GCGC 1 cut(s) 603
HinP1I GCGC 1 cut(s) 603
HincII GTYRAC 2 cut(s) 293, 845
HindII GTYRAC 2 cut(s) 293, 845
HinfI GANTC 4 cut(s) 306, 329, 858, 881
HpaII CCGG 1 cut(s) 103
HphI GGTGA 2 cut(s) 682, 1234
Hpy166II GTNNAC 2 cut(s) 293, 845
Hpy188I TCNGA 3 cut(s) 585, 1137, 1319
Hpy8I GTNNAC 2 cut(s) 293, 845
Hpy99I CGWCG 2 cut(s) 89, 643
HpyAV CCTTC 1 cut(s) 70
HpyCH4III ACNGT 8 cut(s) 265, 346, 621, 643, 817, 898, 1173, 1195
HpyCH4V TGCA 6 cut(s) 520, 570, 595, 1072, 1122, 1147
HpyF10VI GCNNNNNNNGC 2 cut(s) 501, 1053
HspAI GCGC 1 cut(s) 603
Ksp22I TGATCA 2 cut(s) 535, 1087
Kzo9I GATC 6 cut(s) 147, 359, 535, 911, 1087, 1314
Lsp1109I GCAGC 4 cut(s) 165, 491, 717, 1043
MaeI CTAG 2 cut(s) 434, 986
MaeIII GTNAC 4 cut(s) 643, 1189, 1195, 1270
MalI GATC 6 cut(s) 149, 361, 537, 913, 1089, 1316
MboI GATC 6 cut(s) 147, 359, 535, 911, 1087, 1314
MboII GAAGA 8 cut(s) 441, 494, 644, 680, 993, 1046, 1196, 1232
MfeI CAATTG 2 cut(s) 221, 773
MflI RGATCY 1 cut(s) 1314
MluCI AATT 7 cut(s) 163, 221, 473, 579, 715, 773, 1131
MmeI TCCRAC 3 cut(s) 76, 399, 951
Mph1103I ATGCAT 2 cut(s) 572, 1124
MroXI GAANNNNTTC 4 cut(s) 310, 486, 862, 1038
MseI TTAA 5 cut(s) 297, 380, 471, 849, 1023
MspA1I CMGCKG 1 cut(s) 504
MspCI CTTAAG 2 cut(s) 296, 848
MspI CCGG 1 cut(s) 103
MspR9I CCNGG 2 cut(s) 188, 740
MunI CAATTG 2 cut(s) 221, 773
Mva1269I GAATGC 6 cut(s) 216, 414, 597, 768, 966, 1149
MvaI CCWGG 2 cut(s) 188, 740
MvnI CGCG 1 cut(s) 603
MwoI GCNNNNNNNGC 2 cut(s) 501, 1053
NdeII GATC 6 cut(s) 147, 359, 535, 911, 1087, 1314
NmuCI GTSAC 4 cut(s) 643, 1189, 1195, 1270
NsiI ATGCAT 2 cut(s) 572, 1124
PctI GAATGC 6 cut(s) 216, 414, 597, 768, 966, 1149
PdmI GAANNNNTTC 4 cut(s) 310, 486, 862, 1038
PfeI GAWTC 4 cut(s) 306, 329, 858, 881
PkrI GCNGC 8 cut(s) 180, 353, 506, 713, 732, 905, 1058, 1265
Psp6I CCWGG 2 cut(s) 186, 738
PspGI CCWGG 2 cut(s) 186, 738
PsuI RGATCY 1 cut(s) 1314
RsaI GTAC 2 cut(s) 348, 900
RsaNI GTAC 2 cut(s) 347, 899
SaqAI TTAA 5 cut(s) 297, 380, 471, 849, 1023
SatI GCNGC 8 cut(s) 179, 352, 505, 712, 731, 904, 1057, 1264
Sau3AI GATC 6 cut(s) 147, 359, 535, 911, 1087, 1314
ScrFI CCNGG 2 cut(s) 188, 740
SmlI CTYRAG 2 cut(s) 296, 848
SmoI CTYRAG 2 cut(s) 296, 848
Sse9I AATT 7 cut(s) 163, 221, 473, 579, 715, 773, 1131
SspMI CTAG 2 cut(s) 434, 986
StyD4I CCNGG 2 cut(s) 186, 738
StyI CCWWGG 2 cut(s) 424, 976
TaaI ACNGT 8 cut(s) 265, 346, 621, 643, 817, 898, 1173, 1195
TaqI TCGA 3 cut(s) 87, 362, 914
TasI AATT 7 cut(s) 163, 221, 473, 579, 715, 773, 1131
TauI GCSGC 4 cut(s) 354, 714, 906, 1266
TfiI GAWTC 4 cut(s) 306, 329, 858, 881
Tru1I TTAA 5 cut(s) 297, 380, 471, 849, 1023
Tru9I TTAA 5 cut(s) 297, 380, 471, 849, 1023
TseFI GTSAC 4 cut(s) 643, 1189, 1195, 1270
TseI GCWGC 4 cut(s) 178, 504, 730, 1056
Tsp45I GTSAC 4 cut(s) 643, 1189, 1195, 1270
TspDTI ATGAA 2 cut(s) 405, 957
TspGWI ACGGA 2 cut(s) 500, 1052
Vha464I CTTAAG 2 cut(s) 296, 848
XagI CCTNNNNNAGG 1 cut(s) 457
XapI RAATTY 3 cut(s) 473, 579, 1131
XmnI GAANNNNTTC 4 cut(s) 310, 486, 862, 1038
XspI CTAG 2 cut(s) 434, 986
Zsp2I ATGCAT 2 cut(s) 572, 1124
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.