Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0001469

Physical Location & Seq

Genomic Coordinates Forward (+)

640403 .. 647600

Gene Structure 7198 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0008400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1299 bp

ATGAGAATTGCATTGCTCCCCATACTCATTGTGCAACTCAAAAGGTTGAAAAGGATTGAACCATTTCTTCCCAGATTGCCTCCTCCCGGGTCATCTTGCTACTCAGCAAAAAGTTACTTTCGTCGAATTTCTCTGTTTGAAAAGAGGAGGAGGGAAATAGGATGTCCCTCATTTCTATGGCTAATTGCAATCCCCATTGTTCGGGCTCTGTGCTTTTCCCTCTGGTTCAGAAGTATTCGAGAGATGTCACTGAGTAACCATCCAGGGTTTGATTGTGGTGGCACTTTATGGTTCCAAAATTTGACCGAATTGCCTCGTGATGTTTTAAGCTGCATCTTCCCTTTAATGATTGCTGGTTTGCATTATAGCTATATTCAGATTTGCTTTAAGCCATCTTCAGGAAGGAAGTTCATGTTTGGCTTATTATCTGAAGAAGAATTTAAGTTCCAATTGAAAGCTTTGACTCTGCCTATCTACTTGTTTTGCTATTTTGTTCCTCAGGGATGTCTAGTCTATTGGGTCACAAGTAATTCACTCAATATTATTCAGGCATTAGCTCTGGCTGATCCTCGTGTATGTGCAAAGTTGGGGTTGCCAGACAAGAATCATAGTAAAGAGACTTCGAGTTGTGAGGAGTTGGATAATTCTAGACTATCACCCTTGGTCTCTCCTATGGAATCAAAAAAGATATCTCCGCAGATCCCATCCCCTAGAGATCTGAGTAATCTTTCAATCAAACTCTTATCAGAAGGACATAAAGAAAGAGCACTACATTTGCTAAAAATTGCTCTTGAAAAGGATCCTGAATATATAAGAGCATTAATTCTAATGGGTCAGACTCTATTGCAAAAGAAATTGAATGCAGAAGCAACCGAGTACTTTGAGCGTGCTATAACAAAGATCTTTATTGCTGGTCATCCGACAAAAGTAGAGGACATTGATAATTTAATTGTTGCATCTCAGTGGGCTGGTAGCGCCTACATACGACAGGGAAAAATGGAGGAAGGGATTGTACACCTTGAAAGAATTGCACAGTTGGAAGAGCCAGATGAACCAAAGAGCAAAGCTCATTATTTTGATGGGTTGTTAATGCTGGCAAGTGCTCTATCAAATGTGGGTCGCAAGGATGAAGCTTTAAAGCATCTGCGCTTGGCTGCTGCTTATAATCCTGCTTACAAGGAATACTTGGAACAATGTAAAAATATGGACGACAGTGTTGTCAGCGGTAATAGGAAAGTCCAGCAAGACAGAAGAAAATTGGGCAACAAGAAGAAAGACAAGAAAACGAAGAATTGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

432

Amino Acids

49.28

Weight (kDa)

9.33

Isoelectric Point (pI)

48.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001469)

Species	Orthologous Gene IDs
malus_domestica	MD01G1068900.v1.1
rosa_chinensis	RchiOBHm_Chr1g0328881 RchiOBHm_Chr2g0103941 RchiOBHm_Chr2g0148771 RchiOBHm_Chr5g0081751 RchiOBHm_Chr6g0251601 RchiOBHm_Chr6g0252891 RchiOBHm_Chr6g0261041
rosa_laevigata	RLG00000009276
rosa_multiflora	Rmu_sc0002607.1_g000054
rosa_roxburghii	Rroxscaffold_3G00226620 Rroxscaffold_3G00261660 Rroxscaffold_6G00387930 Rroxscaffold_7G00214780
rosa_rugosa	Rorug01G0154400.1 Rorug02G0266600.1 Rorug03G0008400 Rorug03G0200100 Rorug05G0519500 Rorug06G0005400.1 Rorug06G0320100 Rorug07G0042900
rosa_samantha	Rh1AG156000 Rh1AG219000 Rh1BG044200 Rh1DG160300 Rh2BG398200 Rh2BG403900 Rh2BG460500 Rh2CG000900 Rh2CG307500 Rh2CG547200 Rh2DG469900 Rh4CG118200 Rh4DG178300 Rh5CG178000 Rh5CG304800 Rh5CG363400 Rh5DG164400 Rh6AG114000 Rh6AG247400 Rh6BG059200 Rh6BG107600 Rh6CG031400 Rh6CG104700 Rh6DG029900 Rh6DG095500 Rh7BG290500
rosa_wichuraiana	Rw1G002350 Rw4G023590 Rw5G005770 Rw6G009740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1164
AasI	GACNNNNNNGTC	1 cut(s)	1217
AciI	CCGC	2 cut(s)	695, 1224
AclWI	GGATC	4 cut(s)	560, 694, 794, 807
AcsI	RAATTY	3 cut(s)	126, 298, 437
AcuI	CTGAAG	2 cut(s)	381, 450
AfaI	GTAC	2 cut(s)	878, 1014
AfiI	CCNNNNNNNGG	3 cut(s)	86, 201, 398
AgsI	TTSAA	8 cut(s)	49, 59, 140, 454, 732, 794, 859, 1022
AjnI	CCWGG	1 cut(s)	262
AluBI	AGCT	6 cut(s)	330, 369, 458, 557, 1067, 1133
AluI	AGCT	6 cut(s)	330, 369, 458, 557, 1067, 1133
Alw21I	GWGCWC	2 cut(s)	769, 1105
Alw26I	GTCTC	2 cut(s)	611, 670
AlwI	GGATC	4 cut(s)	560, 694, 794, 807
Ama87I	CYCGRG	1 cut(s)	86
ApeKI	GCWGC	3 cut(s)	330, 1154, 1157
ApoI	RAATTY	3 cut(s)	126, 298, 437
AseI	ATTAAT	1 cut(s)	821
Asp700I	GAANNNNTTC	1 cut(s)	63
AspLEI	GCGC	2 cut(s)	977, 1149
AsuC2I	CCSGG	2 cut(s)	87, 88
AsuHPI	GGTGA	1 cut(s)	648
AvaI	CYCGRG	1 cut(s)	86
AxyI	CCTNAGG	1 cut(s)	498
BamHI	GGATCC	1 cut(s)	799
BanII	GRGCYC	1 cut(s)	208
BarI	GAAGNNNNNNTAC	4 cut(s)	604, 636, 996, 1028
BauI	CACGAG	2 cut(s)	315, 570
Bbv12I	GWGCWC	2 cut(s)	769, 1105
BbvI	GCAGC	3 cut(s)	317, 1141, 1144
BccI	CCATC	4 cut(s)	267, 400, 712, 1073
BciT130I	CCWGG	1 cut(s)	264
BcnI	CCSGG	2 cut(s)	87, 88
BcoDI	GTCTC	2 cut(s)	611, 670
BfaI	CTAG	4 cut(s)	509, 648, 711, 1297
BfoI	RGCGCY	1 cut(s)	978
BglII	AGATCT	2 cut(s)	715, 900
BisI	GCNGC	3 cut(s)	331, 1155, 1158
BlsI	GCNGC	3 cut(s)	332, 1156, 1159
BmcAI	AGTACT	1 cut(s)	878
Bme1390I	CCNGG	3 cut(s)	87, 88, 264
BmeT110I	CYCGRG	1 cut(s)	86
BmiI	GGNNCC	2 cut(s)	293, 801
BmrFI	CCNGG	3 cut(s)	87, 88, 264
BmsI	GCATC	3 cut(s)	342, 965, 1150
BplI	GAGNNNNNCTC	2 cut(s)	1051, 1083
BpuMI	CCSGG	2 cut(s)	87, 88
BsaI	GGTCTC	1 cut(s)	670
BsaJI	CCNNGG	3 cut(s)	86, 263, 660
Bsc4I	CCNNNNNNNGG	3 cut(s)	86, 201, 398
Bse21I	CCTNAGG	1 cut(s)	498
Bse3DI	GCAATG	1 cut(s)	11
BseBI	CCWGG	1 cut(s)	264
BseDI	CCNNGG	3 cut(s)	86, 263, 660
BseGI	GGATG	6 cut(s)	167, 259, 509, 704, 916, 1132
BseLI	CCNNNNNNNGG	3 cut(s)	86, 201, 398
BseMI	GCAATG	1 cut(s)	11
BseMII	CTCAG	5 cut(s)	117, 242, 512, 710, 974
BseRI	GAGGAG	4 cut(s)	72, 160, 163, 647
BseXI	GCAGC	3 cut(s)	317, 1141, 1144
BsiHKAI	GWGCWC	2 cut(s)	769, 1105
BsiHKCI	CYCGRG	1 cut(s)	86
BsiSI	CCGG	1 cut(s)	87
BslFI	GGGAC	1 cut(s)	150
BslI	CCNNNNNNNGG	3 cut(s)	86, 201, 398
BsmAI	GTCTC	2 cut(s)	611, 670
BsmFI	GGGAC	1 cut(s)	150
BsmI	GAATGC	1 cut(s)	865
Bso31I	GGTCTC	1 cut(s)	670
BsoBI	CYCGRG	1 cut(s)	86
Bsp1286I	GDGCHC	3 cut(s)	208, 769, 1105
Bsp1407I	TGTACA	1 cut(s)	1012
Bsp143I	GATC	5 cut(s)	565, 699, 715, 799, 900
BspACI	CCGC	2 cut(s)	695, 1224
BspCNI	CTCAG	5 cut(s)	116, 243, 511, 711, 973
BspLI	GGNNCC	2 cut(s)	293, 801
BspPI	GGATC	4 cut(s)	560, 694, 794, 807
BspQI	GCTCTTC	1 cut(s)	1035
BspTNI	GGTCTC	1 cut(s)	670
BsrDI	GCAATG	1 cut(s)	11
BsrGI	TGTACA	1 cut(s)	1012
BssECI	CCNNGG	3 cut(s)	86, 263, 660
BssMI	GATC	5 cut(s)	565, 699, 715, 799, 900
BssSI	CACGAG	2 cut(s)	315, 570
BssT1I	CCWWGG	1 cut(s)	660
Bst2BI	CACGAG	2 cut(s)	315, 570
Bst2UI	CCWGG	1 cut(s)	264
Bst4CI	ACNGT	2 cut(s)	1035, 1214
Bst6I	CTCTTC	1 cut(s)	1035
BstAUI	TGTACA	1 cut(s)	1012
BstC8I	GCNNGC	2 cut(s)	888, 1095
BstDEI	CTNAG	5 cut(s)	103, 251, 498, 719, 960
BstF5I	GGATG	6 cut(s)	167, 259, 509, 704, 916, 1132
BstH2I	RGCGCY	1 cut(s)	978
BstHHI	GCGC	2 cut(s)	977, 1149
BstKTI	GATC	5 cut(s)	568, 702, 718, 802, 903
BstMAI	GTCTC	2 cut(s)	611, 670
BstMBI	GATC	5 cut(s)	565, 699, 715, 799, 900
BstMWI	GCNNNNNNNGC	1 cut(s)	974
BstNI	CCWGG	1 cut(s)	264
BstSCI	CCNGG	3 cut(s)	85, 86, 262
BstV1I	GCAGC	3 cut(s)	317, 1141, 1144
BstX2I	RGATCY	4 cut(s)	699, 715, 799, 900
BstYI	RGATCY	4 cut(s)	699, 715, 799, 900
Bsu36I	CCTNAGG	1 cut(s)	498
BtsCI	GGATG	6 cut(s)	167, 259, 509, 704, 916, 1132
BtsIMutI	CAGTG	3 cut(s)	248, 968, 1219
Cac8I	GCNNGC	2 cut(s)	888, 1095
CfoI	GCGC	2 cut(s)	977, 1149
Cfr9I	CCCGGG	1 cut(s)	86
Csp6I	GTAC	2 cut(s)	877, 1013
CviAII	CATG	1 cut(s)	412
CviQI	GTAC	2 cut(s)	877, 1013
DdeI	CTNAG	5 cut(s)	103, 251, 498, 719, 960
DpnI	GATC	5 cut(s)	567, 701, 717, 801, 902
DpnII	GATC	5 cut(s)	565, 699, 715, 799, 900
DraI	TTTAAA	1 cut(s)	1137
DrdI	GACNNNNNNGTC	1 cut(s)	1217
DseDI	GACNNNNNNGTC	1 cut(s)	1217
Eam1104I	CTCTTC	1 cut(s)	1035
EarI	CTCTTC	1 cut(s)	1035
Eco130I	CCWWGG	1 cut(s)	660
Eco24I	GRGCYC	1 cut(s)	208
Eco31I	GGTCTC	1 cut(s)	670
Eco32I	GATATC	1 cut(s)	690
Eco57I	CTGAAG	2 cut(s)	381, 450
Eco81I	CCTNAGG	1 cut(s)	498
Eco88I	CYCGRG	1 cut(s)	86
EcoRII	CCWGG	1 cut(s)	262
EcoRV	GATATC	1 cut(s)	690
EcoT14I	CCWWGG	1 cut(s)	660
EcoT38I	GRGCYC	1 cut(s)	208
ErhI	CCWWGG	1 cut(s)	660
FaeI	CATG	1 cut(s)	415
FalI	AAGNNNNNCTT	2 cut(s)	1169, 1201
FaqI	GGGAC	1 cut(s)	150
FatI	CATG	1 cut(s)	411
Fnu4HI	GCNGC	3 cut(s)	331, 1155, 1158
FokI	GGATG	6 cut(s)	174, 246, 516, 691, 903, 1139
FriOI	GRGCYC	1 cut(s)	208
Fsp4HI	GCNGC	3 cut(s)	331, 1155, 1158
FspBI	CTAG	4 cut(s)	509, 648, 711, 1297
GlaI	GCGC	2 cut(s)	976, 1148
GluI	GCNGC	3 cut(s)	331, 1155, 1158
HaeII	RGCGCY	1 cut(s)	978
HapII	CCGG	1 cut(s)	87
HhaI	GCGC	2 cut(s)	977, 1149
Hin1II	CATG	1 cut(s)	415
Hin6I	GCGC	2 cut(s)	975, 1147
HinP1I	GCGC	2 cut(s)	975, 1147
HindIII	AAGCTT	2 cut(s)	456, 1131
HinfI	GANTC	4 cut(s)	463, 604, 677, 838
HpaII	CCGG	1 cut(s)	87
HphI	GGTGA	1 cut(s)	648
Hpy166II	GTNNAC	1 cut(s)	1015
Hpy188I	TCNGA	7 cut(s)	230, 378, 430, 720, 748, 837, 921
Hpy188III	TCNNGA	6 cut(s)	239, 317, 399, 648, 791, 803
Hpy8I	GTNNAC	1 cut(s)	1015
Hpy99I	CGWCG	1 cut(s)	126
HpyAV	CCTTC	3 cut(s)	396, 743, 998
HpyCH4III	ACNGT	2 cut(s)	1035, 1214
HpyF10VI	GCNNNNNNNGC	1 cut(s)	974
HpyF3I	CTNAG	5 cut(s)	103, 251, 498, 719, 960
Hsp92II	CATG	1 cut(s)	415
HspAI	GCGC	2 cut(s)	975, 1147
Kzo9I	GATC	5 cut(s)	565, 699, 715, 799, 900
LguI	GCTCTTC	1 cut(s)	1035
LmnI	GCTCC	1 cut(s)	21
Lsp1109I	GCAGC	3 cut(s)	317, 1141, 1144
LweI	GCATC	3 cut(s)	342, 965, 1150
MaeI	CTAG	4 cut(s)	509, 648, 711, 1297
MaeIII	GTNAC	4 cut(s)	113, 246, 254, 520
MalI	GATC	5 cut(s)	567, 701, 717, 801, 902
MboI	GATC	5 cut(s)	565, 699, 715, 799, 900
MboII	GAAGA	8 cut(s)	59, 328, 387, 443, 446, 1052, 1263, 1282
MfeI	CAATTG	1 cut(s)	449
MflI	RGATCY	4 cut(s)	699, 715, 799, 900
MhlI	GDGCHC	3 cut(s)	208, 769, 1105
MlyI	GAGTC	2 cut(s)	457, 832
MmeI	TCCRAC	3 cut(s)	618, 944, 1017
MroXI	GAANNNNTTC	1 cut(s)	63
MseI	TTAA	8 cut(s)	326, 344, 387, 441, 821, 947, 1088, 1136
MslI	CAYNNNNRTG	2 cut(s)	175, 961
MspA1I	CMGCKG	1 cut(s)	1224
MspI	CCGG	1 cut(s)	87
MspR9I	CCNGG	3 cut(s)	87, 88, 264
MunI	CAATTG	1 cut(s)	449
Mva1269I	GAATGC	1 cut(s)	865
MvaI	CCWGG	1 cut(s)	264
MwoI	GCNNNNNNNGC	1 cut(s)	974
NciI	CCSGG	2 cut(s)	87, 88
NdeII	GATC	5 cut(s)	565, 699, 715, 799, 900
NlaIII	CATG	1 cut(s)	415
NlaIV	GGNNCC	2 cut(s)	293, 801
NmuCI	GTSAC	2 cut(s)	246, 520
PciSI	GCTCTTC	1 cut(s)	1035
PctI	GAATGC	1 cut(s)	865
PdmI	GAANNNNTTC	1 cut(s)	63
PfeI	GAWTC	2 cut(s)	604, 677
PkrI	GCNGC	3 cut(s)	332, 1156, 1159
PleI	GAGTC	2 cut(s)	457, 832
PpsI	GAGTC	2 cut(s)	457, 832
PshBI	ATTAAT	1 cut(s)	821
PsiI	TTATAA	1 cut(s)	1164
Psp6I	CCWGG	1 cut(s)	262
PspGI	CCWGG	1 cut(s)	262
PspN4I	GGNNCC	2 cut(s)	293, 801
PsuI	RGATCY	4 cut(s)	699, 715, 799, 900
RsaI	GTAC	2 cut(s)	878, 1014
RsaNI	GTAC	2 cut(s)	877, 1013
RseI	CAYNNNNRTG	2 cut(s)	175, 961
SapI	GCTCTTC	1 cut(s)	1035
SaqAI	TTAA	8 cut(s)	326, 344, 387, 441, 821, 947, 1088, 1136
SatI	GCNGC	3 cut(s)	331, 1155, 1158
Sau3AI	GATC	5 cut(s)	565, 699, 715, 799, 900
ScaI	AGTACT	1 cut(s)	878
SchI	GAGTC	2 cut(s)	457, 832
ScrFI	CCNGG	3 cut(s)	87, 88, 264
SduI	GDGCHC	3 cut(s)	208, 769, 1105
SetI	ASST	8 cut(s)	47, 332, 371, 460, 559, 1020, 1069, 1135
SfaNI	GCATC	3 cut(s)	342, 965, 1150
SmaI	CCCGGG	1 cut(s)	88
SmiMI	CAYNNNNRTG	2 cut(s)	175, 961
SsiI	CCGC	2 cut(s)	695, 1224
SspI	AATATT	1 cut(s)	541
SspMI	CTAG	4 cut(s)	509, 648, 711, 1297
StyD4I	CCNGG	3 cut(s)	85, 86, 262
StyI	CCWWGG	1 cut(s)	660
TaaI	ACNGT	2 cut(s)	1035, 1214
TaqI	TCGA	3 cut(s)	124, 238, 623
TaqII	GACCGA	1 cut(s)	320
TatI	WGTACW	2 cut(s)	876, 1012
TfiI	GAWTC	2 cut(s)	604, 677
Tru1I	TTAA	8 cut(s)	326, 344, 387, 441, 821, 947, 1088, 1136
Tru9I	TTAA	8 cut(s)	326, 344, 387, 441, 821, 947, 1088, 1136
TscAI	CASTG	3 cut(s)	255, 968, 1219
TseFI	GTSAC	2 cut(s)	246, 520
TseI	GCWGC	3 cut(s)	330, 1154, 1157
Tsp45I	GTSAC	2 cut(s)	246, 520
TspDTI	ATGAA	3 cut(s)	400, 1065, 1143
TspMI	CCCGGG	1 cut(s)	86
TspRI	CASTG	3 cut(s)	255, 968, 1219
VspI	ATTAAT	1 cut(s)	821
XapI	RAATTY	3 cut(s)	126, 298, 437
XbaI	TCTAGA	1 cut(s)	647
XmaI	CCCGGG	1 cut(s)	86
XmnI	GAANNNNTTC	1 cut(s)	63
XspI	CTAG	4 cut(s)	509, 648, 711, 1297
ZrmI	AGTACT	1 cut(s)	878

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.