Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0001469

Physical Location & Seq

Genomic Coordinates Reverse (-)

16720212 .. 16724085

Gene Structure 3874 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG107600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 654 bp

ATGCTGATGAGCTTTTGGAATCAGAAAGGAAGGTTCATGACATTGGAAGACTTTTATGCTCTGATGGACTGGGAAAGCAAAATTGATCCTTTACACTGCATATCAATGCATGAAATTACAAAGCCTAATCCGTTTGCTCAGAAAGATGATGCAACTATATTTGTCAATTTCCAGCTGGGTGATCTGGAGTCAAGAGTATCTCTGCAGTTTGTTTGTTTTGTTGATGAAGCATTCCACCAGATTGAAAGAAATGATAGCAATGTTAAGAAAATAGGTCTACATTGTAAAGGTATTCCGAGAATAATTAGTATGGACTTGAAGAGTAACTTGAGGAAGAGATGCAGCAGCTGCAAGGATCCTAAGCTGGAAAAATTGCACGCTGATCAAATTGCAGCTCTGAAGGTCATTGATCCTCAGAATAAGATCGACGGAGATGGTATGACTTTTGGGGCGGCATGGCTGACGGCTCCTGGAGGTGATTGGAAGGTAGATGATGGTGGCGGAGGCTGGTGGGATTCGGTTAGTCTAGGTCGACTTTCTGTCTCAGATGACGGCAGAGATTTAGGAGTGAAGGACCGCAATAGTGGTGGCATTGCTTATGTGTGTTGGCTGTGGTTTTCCACTCGTGGAGGTGGCTACGAAGTTGAAGGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sec3-PIP2_bind Sec3_C

Protein Analysis

217

Amino Acids

24.37

Weight (kDa)

5.54

Isoelectric Point (pI)

33.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001469)

Species	Orthologous Gene IDs
malus_domestica	MD01G1068900.v1.1
rosa_chinensis	RchiOBHm_Chr1g0328881 RchiOBHm_Chr2g0103941 RchiOBHm_Chr2g0148771 RchiOBHm_Chr5g0081751 RchiOBHm_Chr6g0251601 RchiOBHm_Chr6g0252891 RchiOBHm_Chr6g0261041
rosa_laevigata	RLG00000009276
rosa_multiflora	Rmu_sc0002607.1_g000054
rosa_roxburghii	Rroxscaffold_3G00226620 Rroxscaffold_3G00261660 Rroxscaffold_6G00387930 Rroxscaffold_7G00214780
rosa_rugosa	Rorug01G0154400.1 Rorug02G0266600.1 Rorug03G0008400 Rorug03G0200100 Rorug05G0519500 Rorug06G0005400.1 Rorug06G0320100 Rorug07G0042900
rosa_samantha	Rh1AG156000 Rh1AG219000 Rh1BG044200 Rh1DG160300 Rh2BG398200 Rh2BG403900 Rh2BG460500 Rh2CG000900 Rh2CG307500 Rh2CG547200 Rh2DG469900 Rh4CG118200 Rh4DG178300 Rh5CG178000 Rh5CG304800 Rh5CG363400 Rh5DG164400 Rh6AG114000 Rh6AG247400 Rh6BG059200 Rh6BG107600 Rh6CG031400 Rh6CG104700 Rh6DG029900 Rh6DG095500 Rh7BG290500
rosa_wichuraiana	Rw1G002350 Rw4G023590 Rw5G005770 Rw6G009740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	277, 532
AciI	CCGC	3 cut(s)	452, 501, 577
AclWI	GGATC	4 cut(s)	80, 350, 363, 404
AcuI	CTGAAG	1 cut(s)	419
AgsI	TTSAA	3 cut(s)	245, 319, 647
AhdI	GACNNNNNGTC	1 cut(s)	539
AjnI	CCWGG	1 cut(s)	469
AluBI	AGCT	5 cut(s)	12, 175, 348, 364, 395
AluI	AGCT	5 cut(s)	12, 175, 348, 364, 395
Alw26I	GTCTC	1 cut(s)	547
AlwI	GGATC	4 cut(s)	80, 350, 363, 404
AlwNI	CAGNNNCTG	1 cut(s)	348
ApeKI	GCWGC	4 cut(s)	342, 345, 348, 392
AspS9I	GGNCC	1 cut(s)	574
AsuHPI	GGTGA	2 cut(s)	191, 488
AvaII	GGWCC	1 cut(s)	574
BamHI	GGATCC	1 cut(s)	355
BauI	CACGAG	1 cut(s)	624
BbsI	GAAGAC	1 cut(s)	54
BbvI	GCAGC	4 cut(s)	335, 354, 357, 404
BccI	CCATC	3 cut(s)	58, 428, 488
BceAI	ACGGC	2 cut(s)	480, 568
BciT130I	CCWGG	1 cut(s)	471
BclI	TGATCA	1 cut(s)	382
BcoDI	GTCTC	1 cut(s)	547
BfaI	CTAG	1 cut(s)	527
BfmI	CTRYAG	1 cut(s)	203
BisI	GCNGC	5 cut(s)	343, 346, 349, 393, 453
BlsI	GCNGC	5 cut(s)	344, 347, 350, 394, 454
Bme1390I	CCNGG	1 cut(s)	471
Bme18I	GGWCC	1 cut(s)	574
BmeRI	GACNNNNNGTC	1 cut(s)	539
BmgT120I	GGNCC	1 cut(s)	574
BmiI	GGNNCC	2 cut(s)	357, 468
BmrFI	CCNGG	1 cut(s)	471
BmrI	ACTGGG	1 cut(s)	79
BmsI	GCATC	2 cut(s)	139, 329
BmuI	ACTGGG	1 cut(s)	79
BpiI	GAAGAC	1 cut(s)	54
BpmI	CTGGAG	2 cut(s)	206, 492
Bpu10I	CCTNAGC	1 cut(s)	360
BpuEI	CTTGAG	1 cut(s)	349
Bse1I	ACTGG	1 cut(s)	74
Bse3DI	GCAATG	2 cut(s)	265, 591
BseBI	CCWGG	1 cut(s)	471
BseMI	GCAATG	2 cut(s)	265, 591
BseMII	CTCAG	3 cut(s)	152, 428, 558
BseNI	ACTGG	1 cut(s)	74
BseXI	GCAGC	4 cut(s)	335, 354, 357, 404
BseYI	CCCAGC	1 cut(s)	175
BsmAI	GTCTC	1 cut(s)	547
BsmI	GAATGC	1 cut(s)	230
Bsp143I	GATC	6 cut(s)	85, 181, 355, 382, 409, 423
BspACI	CCGC	3 cut(s)	452, 501, 577
BspCNI	CTCAG	3 cut(s)	151, 427, 557
BspHI	TCATGA	1 cut(s)	36
BspLI	GGNNCC	2 cut(s)	357, 468
BspMAI	CTGCAG	1 cut(s)	207
BspPI	GGATC	4 cut(s)	80, 350, 363, 404
BsrDI	GCAATG	2 cut(s)	265, 591
BsrI	ACTGG	1 cut(s)	74
BssMI	GATC	6 cut(s)	85, 181, 355, 382, 409, 423
BssSI	CACGAG	1 cut(s)	624
Bst2BI	CACGAG	1 cut(s)	624
Bst2UI	CCWGG	1 cut(s)	471
Bst6I	CTCTTC	2 cut(s)	314, 329
BstAPI	GCANNNNNTGC	1 cut(s)	348
BstC8I	GCNNGC	1 cut(s)	378
BstDEI	CTNAG	4 cut(s)	138, 360, 414, 544
BstKTI	GATC	6 cut(s)	88, 184, 358, 385, 412, 426
BstMAI	GTCTC	1 cut(s)	547
BstMBI	GATC	6 cut(s)	85, 181, 355, 382, 409, 423
BstMWI	GCNNNNNNNGC	1 cut(s)	348
BstNI	CCWGG	1 cut(s)	471
BstSCI	CCNGG	1 cut(s)	469
BstSFI	CTRYAG	1 cut(s)	203
BstV1I	GCAGC	4 cut(s)	335, 354, 357, 404
BstV2I	GAAGAC	1 cut(s)	54
BstX2I	RGATCY	1 cut(s)	355
BstYI	RGATCY	1 cut(s)	355
BtsI	GCAGTG	1 cut(s)	94
BtsIMutI	CAGTG	1 cut(s)	94
Cac8I	GCNNGC	1 cut(s)	378
CaiI	CAGNNNCTG	1 cut(s)	348
CciI	TCATGA	1 cut(s)	36
Cfr13I	GGNCC	1 cut(s)	574
CspCI	CAANNNNNGTGG	2 cut(s)	568, 603
CviAII	CATG	3 cut(s)	37, 110, 456
DdeI	CTNAG	4 cut(s)	138, 360, 414, 544
DpnI	GATC	6 cut(s)	87, 183, 357, 384, 411, 425
DpnII	GATC	6 cut(s)	85, 181, 355, 382, 409, 423
DriI	GACNNNNNGTC	1 cut(s)	539
Eam1104I	CTCTTC	2 cut(s)	314, 329
Eam1105I	GACNNNNNGTC	1 cut(s)	539
EarI	CTCTTC	2 cut(s)	314, 329
EciI	GGCGGA	1 cut(s)	516
Eco47I	GGWCC	1 cut(s)	574
Eco57I	CTGAAG	1 cut(s)	419
EcoRII	CCWGG	1 cut(s)	469
EcoT22I	ATGCAT	1 cut(s)	111
FaeI	CATG	3 cut(s)	40, 113, 459
FaiI	YATR	9 cut(s)	38, 57, 101, 111, 158, 311, 440, 457, 600
FalI	AAGNNNNNCTT	2 cut(s)	311, 343
FatI	CATG	3 cut(s)	36, 109, 455
FbaI	TGATCA	1 cut(s)	382
FblI	GTMKAC	2 cut(s)	277, 532
Fnu4HI	GCNGC	5 cut(s)	343, 346, 349, 393, 453
Fsp4HI	GCNGC	5 cut(s)	343, 346, 349, 393, 453
FspBI	CTAG	1 cut(s)	527
GluI	GCNGC	5 cut(s)	343, 346, 349, 393, 453
GsaI	CCCAGC	1 cut(s)	179
GsuI	CTGGAG	2 cut(s)	206, 492
Hin1II	CATG	3 cut(s)	40, 113, 459
HincII	GTYRAC	1 cut(s)	533
HindII	GTYRAC	1 cut(s)	533
HinfI	GANTC	3 cut(s)	19, 188, 515
HphI	GGTGA	2 cut(s)	191, 488
Hpy166II	GTNNAC	2 cut(s)	278, 533
Hpy188I	TCNGA	7 cut(s)	24, 63, 141, 297, 399, 417, 547
Hpy188III	TCNNGA	3 cut(s)	37, 185, 192
Hpy8I	GTNNAC	2 cut(s)	278, 533
Hpy99I	CGWCG	1 cut(s)	431
HpyAV	CCTTC	5 cut(s)	24, 394, 478, 565, 641
HpyCH4V	TGCA	8 cut(s)	99, 109, 152, 205, 342, 351, 376, 392
HpyF10VI	GCNNNNNNNGC	1 cut(s)	348
HpyF3I	CTNAG	4 cut(s)	138, 360, 414, 544
Hsp92II	CATG	3 cut(s)	40, 113, 459
Ksp22I	TGATCA	1 cut(s)	382
Kzo9I	GATC	6 cut(s)	85, 181, 355, 382, 409, 423
LmnI	GCTCC	1 cut(s)	472
LpnPI	CCDG	9 cut(s)	55, 161, 170, 185, 251, 350, 456, 483, 493
Lsp1109I	GCAGC	4 cut(s)	335, 354, 357, 404
LweI	GCATC	2 cut(s)	139, 329
MaeI	CTAG	1 cut(s)	527
MaeIII	GTNAC	1 cut(s)	323
MalI	GATC	6 cut(s)	87, 183, 357, 384, 411, 425
MboI	GATC	6 cut(s)	85, 181, 355, 382, 409, 423
MboII	GAAGA	3 cut(s)	59, 331, 346
MflI	RGATCY	1 cut(s)	355
MluCI	AATT	6 cut(s)	81, 114, 166, 303, 371, 387
MlyI	GAGTC	1 cut(s)	197
MnlI	CCTC	5 cut(s)	324, 423, 467, 497, 623
Mph1103I	ATGCAT	1 cut(s)	111
MseI	TTAA	1 cut(s)	264
MslI	CAYNNNNRTG	1 cut(s)	104
MspA1I	CMGCKG	2 cut(s)	175, 348
MspR9I	CCNGG	1 cut(s)	471
Mva1269I	GAATGC	1 cut(s)	230
MvaI	CCWGG	1 cut(s)	471
MwoI	GCNNNNNNNGC	1 cut(s)	348
NdeII	GATC	6 cut(s)	85, 181, 355, 382, 409, 423
NlaIII	CATG	3 cut(s)	40, 113, 459
NlaIV	GGNNCC	2 cut(s)	357, 468
NsiI	ATGCAT	1 cut(s)	111
PagI	TCATGA	1 cut(s)	36
PctI	GAATGC	1 cut(s)	230
PfeI	GAWTC	2 cut(s)	19, 515
PfoI	TCCNGGA	1 cut(s)	469
PkrI	GCNGC	5 cut(s)	344, 347, 350, 394, 454
PleI	GAGTC	1 cut(s)	196
PpsI	GAGTC	1 cut(s)	196
Psp6I	CCWGG	1 cut(s)	469
PspFI	CCCAGC	1 cut(s)	175
PspGI	CCWGG	1 cut(s)	469
PspN4I	GGNNCC	2 cut(s)	357, 468
PspPI	GGNCC	1 cut(s)	574
PstI	CTGCAG	1 cut(s)	207
PstNI	CAGNNNCTG	1 cut(s)	348
PsuI	RGATCY	1 cut(s)	355
PvuII	CAGCTG	2 cut(s)	175, 348
RseI	CAYNNNNRTG	1 cut(s)	104
SalI	GTCGAC	1 cut(s)	531
SaqAI	TTAA	1 cut(s)	264
SatI	GCNGC	5 cut(s)	343, 346, 349, 393, 453
Sau3AI	GATC	6 cut(s)	85, 181, 355, 382, 409, 423
Sau96I	GGNCC	1 cut(s)	574
SchI	GAGTC	1 cut(s)	197
ScrFI	CCNGG	1 cut(s)	471
SfaNI	GCATC	2 cut(s)	139, 329
SfcI	CTRYAG	1 cut(s)	203
SinI	GGWCC	1 cut(s)	574
SmiMI	CAYNNNNRTG	1 cut(s)	104
SmlI	CTYRAG	1 cut(s)	328
SmoI	CTYRAG	1 cut(s)	328
Sse9I	AATT	6 cut(s)	81, 114, 166, 303, 371, 387
SsiI	CCGC	3 cut(s)	452, 501, 577
SspMI	CTAG	1 cut(s)	527
StyD4I	CCNGG	1 cut(s)	469
TaqI	TCGA	2 cut(s)	426, 532
TasI	AATT	6 cut(s)	81, 114, 166, 303, 371, 387
TauI	GCSGC	1 cut(s)	455
TfiI	GAWTC	2 cut(s)	19, 515
Tru1I	TTAA	1 cut(s)	264
Tru9I	TTAA	1 cut(s)	264
TscAI	CASTG	1 cut(s)	101
TseI	GCWGC	4 cut(s)	342, 345, 348, 392
TspDTI	ATGAA	3 cut(s)	25, 126, 240
TspGWI	ACGGA	2 cut(s)	120, 444
TspRI	CASTG	1 cut(s)	101
VpaK11BI	GGWCC	1 cut(s)	574
XmiI	GTMKAC	2 cut(s)	277, 532
XspI	CTAG	1 cut(s)	527
Zsp2I	ATGCAT	1 cut(s)	111

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.