Rh6BG059200
ERF Family

Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin Fzo YdjA family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0001469
Physical Location & Seq
Reverse (-)
9420079 .. 9421549
1471 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG059200.1

Sequence Viewer

Length: 234 bp
ATGATTGTTGCTTTGCTTGTTTCTGCTGTTATTGTGCTTCTTACATGTTACGGAAACGAGCTCTTTATGATCAGTGAGTGGCCTGTGCTTAAACCCCTTCCATCTTATGGTACAAGAAGAGATGCAGCAGCTGGTATGGAAGGCCAGGCCATCCTCGCCGACGAAGACTCTACTGCCTCCTCTCGCCGCTCCTCAACTTTCTTCAACGTCGTCGGTCTCGGCAATGTTTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000266 GO:0000902 GO:0000904 GO:0001101 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005829 GO:0005886 GO:0005911 GO:0006810 GO:0006892 GO:0006896 GO:0006897 GO:0006898 GO:0006996 GO:0007005 GO:0007034 GO:0007275 GO:0008017 GO:0008092 GO:0008150 GO:0009504 GO:0009506 GO:0009653 GO:0009719 GO:0009725 GO:0009737 GO:0009888 GO:0009987 GO:0010015 GO:0010033 GO:0010053 GO:0010054 GO:0012505 GO:0015631 GO:0016020 GO:0016043 GO:0016192 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0021700 GO:0022622 GO:0030054 GO:0030135 GO:0030136 GO:0030139 GO:0030154 GO:0030276 GO:0031090 GO:0031410 GO:0031982 GO:0032501 GO:0032502 GO:0032878 GO:0032989 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045334 GO:0046907 GO:0048193 GO:0048285 GO:0048364 GO:0048468 GO:0048469 GO:0048731 GO:0048764 GO:0048765 GO:0048766 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055044 GO:0065007 GO:0071695 GO:0071840 GO:0071944 GO:0072583 GO:0090558 GO:0090627 GO:0097305 GO:0097708 GO:0098588 GO:0098657 GO:0098805 GO:0099402 GO:1901700 GO:1905392 GO:2000114
KEGG Pathways
Metabolic & Signaling
ko04072 ko04144 ko04721 ko04961 ko05100 map04072 map04144 map04721 map04961 map05100
Pfam Domains
Protein Families
Dynamin_M Dynamin_N GED PH

Protein Analysis

77

Amino Acids

8.28

Weight (kDa)

4.72

Isoelectric Point (pI)

42.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 107
AccBSI CCGCTC 1 cut(s) 189
AciI CCGC 1 cut(s) 187
AfaI GTAC 1 cut(s) 112
AfiI CCNNNNNNNGG 1 cut(s) 107
AflIII ACRYGT 1 cut(s) 44
AgsI TTSAA 1 cut(s) 205
AjnI CCWGG 1 cut(s) 144
AluBI AGCT 2 cut(s) 61, 131
AluI AGCT 2 cut(s) 61, 131
Alw21I GWGCWC 1 cut(s) 63
Alw26I GTCTC 1 cut(s) 221
AlwNI CAGNNNCTG 1 cut(s) 131
AoxI GGCC 3 cut(s) 80, 142, 147
ApeKI GCWGC 2 cut(s) 125, 128
BanII GRGCYC 1 cut(s) 63
BbsI GAAGAC 1 cut(s) 171
Bbv12I GWGCWC 1 cut(s) 63
BbvI GCAGC 2 cut(s) 137, 140
BccI CCATC 2 cut(s) 109, 158
BciT130I CCWGG 1 cut(s) 146
BclI TGATCA 1 cut(s) 69
BcoDI GTCTC 1 cut(s) 221
BisI GCNGC 3 cut(s) 126, 129, 187
BlsI GCNGC 3 cut(s) 127, 130, 188
Bme1390I CCNGG 1 cut(s) 146
BmrFI CCNGG 1 cut(s) 146
BmsI GCATC 1 cut(s) 112
BpiI GAAGAC 1 cut(s) 171
BsaI GGTCTC 1 cut(s) 221
Bsc4I CCNNNNNNNGG 1 cut(s) 107
Bse3DI GCAATG 1 cut(s) 229
BseBI CCWGG 1 cut(s) 146
BseGI GGATG 1 cut(s) 150
BseLI CCNNNNNNNGG 1 cut(s) 107
BseMI GCAATG 1 cut(s) 229
BseRI GAGGAG 2 cut(s) 169, 181
BseXI GCAGC 2 cut(s) 137, 140
BshFI GGCC 3 cut(s) 82, 144, 149
BsiHKAI GWGCWC 1 cut(s) 63
BslI CCNNNNNNNGG 1 cut(s) 107
BsmAI GTCTC 1 cut(s) 221
BsnI GGCC 3 cut(s) 82, 144, 149
Bso31I GGTCTC 1 cut(s) 221
Bsp1286I GDGCHC 1 cut(s) 63
Bsp143I GATC 1 cut(s) 69
BspACI CCGC 1 cut(s) 187
BspANI GGCC 3 cut(s) 82, 144, 149
BspTNI GGTCTC 1 cut(s) 221
BsrBI CCGCTC 1 cut(s) 189
BsrDI GCAATG 1 cut(s) 229
BssMI GATC 1 cut(s) 69
Bst2UI CCWGG 1 cut(s) 146
Bst6I CTCTTC 1 cut(s) 112
BstF5I GGATG 1 cut(s) 150
BstKTI GATC 1 cut(s) 72
BstMAI GTCTC 1 cut(s) 221
BstMBI GATC 1 cut(s) 69
BstMWI GCNNNNNNNGC 1 cut(s) 155
BstNI CCWGG 1 cut(s) 146
BstNSI RCATGY 1 cut(s) 48
BstSCI CCNGG 1 cut(s) 144
BstV1I GCAGC 2 cut(s) 137, 140
BstV2I GAAGAC 1 cut(s) 171
BsuRI GGCC 3 cut(s) 82, 144, 149
BtsCI GGATG 1 cut(s) 150
BtsIMutI CAGTG 1 cut(s) 79
CaiI CAGNNNCTG 1 cut(s) 131
Csp6I GTAC 1 cut(s) 111
CviAII CATG 1 cut(s) 45
CviJI RGCY 5 cut(s) 61, 82, 131, 144, 149
CviKI_1 RGCY 5 cut(s) 61, 82, 131, 144, 149
CviQI GTAC 1 cut(s) 111
DpnI GATC 1 cut(s) 71
DpnII GATC 1 cut(s) 69
Eam1104I CTCTTC 1 cut(s) 112
EarI CTCTTC 1 cut(s) 112
Ecl136II GAGCTC 1 cut(s) 61
Eco24I GRGCYC 1 cut(s) 63
Eco31I GGTCTC 1 cut(s) 221
Eco53kI GAGCTC 1 cut(s) 61
EcoICRI GAGCTC 1 cut(s) 61
EcoRII CCWGG 1 cut(s) 144
EcoT38I GRGCYC 1 cut(s) 63
FaeI CATG 1 cut(s) 48
FaiI YATR 4 cut(s) 46, 68, 108, 137
FatI CATG 1 cut(s) 44
FbaI TGATCA 1 cut(s) 69
Fnu4HI GCNGC 3 cut(s) 126, 129, 187
FokI GGATG 1 cut(s) 137
FriOI GRGCYC 1 cut(s) 63
Fsp4HI GCNGC 3 cut(s) 126, 129, 187
GluI GCNGC 3 cut(s) 126, 129, 187
HaeIII GGCC 3 cut(s) 82, 144, 149
Hin1II CATG 1 cut(s) 48
HinfI GANTC 1 cut(s) 167
Hpy166II GTNNAC 1 cut(s) 229
Hpy8I GTNNAC 1 cut(s) 229
Hpy99I CGWCG 3 cut(s) 164, 212, 215
HpyAV CCTTC 2 cut(s) 107, 134
HpyCH4IV ACGT 1 cut(s) 207
HpyCH4V TGCA 1 cut(s) 125
HpyF10VI GCNNNNNNNGC 1 cut(s) 155
HpySE526I ACGT 1 cut(s) 207
Hsp92II CATG 1 cut(s) 48
Ksp22I TGATCA 1 cut(s) 69
Kzo9I GATC 1 cut(s) 69
LmnI GCTCC 1 cut(s) 194
LpnPI CCDG 4 cut(s) 96, 117, 131, 158
Lsp1109I GCAGC 2 cut(s) 137, 140
LweI GCATC 1 cut(s) 112
MaeII ACGT 1 cut(s) 207
MaeIII GTNAC 1 cut(s) 47
MalI GATC 1 cut(s) 71
MbiI CCGCTC 1 cut(s) 189
MboI GATC 1 cut(s) 69
MboII GAAGA 3 cut(s) 129, 176, 193
MhlI GDGCHC 1 cut(s) 63
MlyI GAGTC 1 cut(s) 161
MnlI CCTC 4 cut(s) 164, 187, 190, 202
MseI TTAA 1 cut(s) 90
MspA1I CMGCKG 1 cut(s) 131
MspR9I CCNGG 1 cut(s) 146
MvaI CCWGG 1 cut(s) 146
MwoI GCNNNNNNNGC 1 cut(s) 155
NdeII GATC 1 cut(s) 69
NlaIII CATG 1 cut(s) 48
NmeAIII GCCGAG 1 cut(s) 198
NspI RCATGY 1 cut(s) 48
PciI ACATGT 1 cut(s) 44
PflMI CCANNNNNTGG 1 cut(s) 107
PkrI GCNGC 3 cut(s) 127, 130, 188
PleI GAGTC 1 cut(s) 161
PpsI GAGTC 1 cut(s) 161
PscI ACATGT 1 cut(s) 44
Psp124BI GAGCTC 1 cut(s) 63
Psp6I CCWGG 1 cut(s) 144
PspGI CCWGG 1 cut(s) 144
PstNI CAGNNNCTG 1 cut(s) 131
PvuII CAGCTG 1 cut(s) 131
RsaI GTAC 1 cut(s) 112
RsaNI GTAC 1 cut(s) 111
SacI GAGCTC 1 cut(s) 63
SaqAI TTAA 1 cut(s) 90
SatI GCNGC 3 cut(s) 126, 129, 187
Sau3AI GATC 1 cut(s) 69
SchI GAGTC 1 cut(s) 161
ScrFI CCNGG 1 cut(s) 146
SduI GDGCHC 1 cut(s) 63
SetI ASST 3 cut(s) 63, 133, 210
SfaNI GCATC 1 cut(s) 112
SsiI CCGC 1 cut(s) 187
SstI GAGCTC 1 cut(s) 63
StyD4I CCNGG 1 cut(s) 144
TaiI ACGT 1 cut(s) 210
TaqII GACCGA 1 cut(s) 203
TauI GCSGC 1 cut(s) 189
Tru1I TTAA 1 cut(s) 90
Tru9I TTAA 1 cut(s) 90
TscAI CASTG 1 cut(s) 79
TseI GCWGC 2 cut(s) 125, 128
TspGWI ACGGA 1 cut(s) 66
TspRI CASTG 1 cut(s) 79
Van91I CCANNNNNTGG 1 cut(s) 107
XceI RCATGY 1 cut(s) 48
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.