Rroxscaffold_6G00387930

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0001469
Physical Location & Seq
Reverse (-)
260967 .. 275337
14371 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00387930.1

Sequence Viewer

Length: 564 bp
ATGTTGGGACAGTGTAATCACAATCAGAATTTTGCTTCAGCAACAACTCATACGTCAAGAAAATCGAAAAGATGGAGAACAGTGTGTCAACAACAAACGGCTGAAGCTTCGCATAGTTTCTGTGGAAATGACGAACAAAATTCTGCTGTAATGGCGAACGAGGATCTATTAGTCGGTACAGCATCACATATTGATAATTTAATTATGGGAGATATGCCATCCAATATTGAATCAAGAAGAACCAGGAATTTGTTGAGACAATGTGATCGCGCTGAAAATTGTGCTCCAACAAATGTGTTCTTTACTAGCGATGAATCTCACCAAGTCACATCACGGAACTCAAAGAGGTGGAAAGTTGCATCTCAACAACCAGCTACTGAAGCATTAGATACTTTCTCTGGAAATCATGAACAAAACCTTGCTGCACCTATAAATGAAAATTTATTAGTTGGGACATCATCACATAACGATTATTCAATCACAGAAGGTCAATCTTCACATTCACGTGGTCAGGCATCATTTCAAAGAACAAAGCAAGCCTCCAGTCTAAACTTCATGATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

187

Amino Acids

20.76

Weight (kDa)

6.7

Isoelectric Point (pI)

57.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 270
AclWI GGATC 1 cut(s) 171
AcsI RAATTY 4 cut(s) 28, 139, 247, 439
AcuI CTGAAG 3 cut(s) 21, 123, 399
AcvI CACGTG 1 cut(s) 506
AfaI GTAC 1 cut(s) 178
AgsI TTSAA 3 cut(s) 230, 477, 524
AjnI CCWGG 1 cut(s) 242
AluBI AGCT 2 cut(s) 107, 374
AluI AGCT 2 cut(s) 107, 374
Alw21I GWGCWC 1 cut(s) 286
Alw26I GTCTC 1 cut(s) 250
AlwI GGATC 1 cut(s) 171
AlwNI CAGNNNCTG 1 cut(s) 377
ApeKI GCWGC 1 cut(s) 422
ApoI RAATTY 4 cut(s) 28, 139, 247, 439
AspLEI GCGC 1 cut(s) 272
AsuHPI GGTGA 1 cut(s) 311
BbrPI CACGTG 1 cut(s) 506
Bbv12I GWGCWC 1 cut(s) 286
BbvI GCAGC 1 cut(s) 409
BccI CCATC 2 cut(s) 66, 226
BceAI ACGGC 1 cut(s) 114
BciT130I CCWGG 1 cut(s) 244
BcoDI GTCTC 1 cut(s) 250
BfaI CTAG 2 cut(s) 306, 562
BisI GCNGC 1 cut(s) 423
BlsI GCNGC 1 cut(s) 424
Bme1390I CCNGG 1 cut(s) 244
BmrFI CCNGG 1 cut(s) 244
BmsI GCATC 3 cut(s) 191, 368, 524
BpmI CTGGAG 1 cut(s) 526
BsaAI YACGTR 1 cut(s) 506
Bse1I ACTGG 1 cut(s) 543
BseBI CCWGG 1 cut(s) 244
BseGI GGATG 1 cut(s) 218
BseNI ACTGG 1 cut(s) 543
BseXI GCAGC 1 cut(s) 409
BsgI GTGCAG 1 cut(s) 408
Bsh1236I CGCG 1 cut(s) 270
BsiHKAI GWGCWC 1 cut(s) 286
BslFI GGGAC 2 cut(s) 21, 466
BsmAI GTCTC 1 cut(s) 250
BsmFI GGGAC 2 cut(s) 21, 466
Bsp1286I GDGCHC 1 cut(s) 286
Bsp143I GATC 3 cut(s) 163, 265, 558
BspFNI CGCG 1 cut(s) 270
BspHI TCATGA 2 cut(s) 406, 555
BspPI GGATC 1 cut(s) 171
BsrI ACTGG 1 cut(s) 543
BssMI GATC 3 cut(s) 163, 265, 558
Bst2UI CCWGG 1 cut(s) 244
Bst4CI ACNGT 2 cut(s) 12, 82
BstBAI YACGTR 1 cut(s) 506
BstC8I GCNNGC 1 cut(s) 537
BstF5I GGATG 1 cut(s) 218
BstFNI CGCG 1 cut(s) 270
BstHHI GCGC 1 cut(s) 272
BstKTI GATC 3 cut(s) 166, 268, 561
BstMAI GTCTC 1 cut(s) 250
BstMBI GATC 3 cut(s) 163, 265, 558
BstMWI GCNNNNNNNGC 2 cut(s) 152, 380
BstNI CCWGG 1 cut(s) 244
BstSCI CCNGG 1 cut(s) 242
BstUI CGCG 1 cut(s) 270
BstV1I GCAGC 1 cut(s) 409
BstX2I RGATCY 1 cut(s) 163
BstYI RGATCY 1 cut(s) 163
BtgZI GCGATG 1 cut(s) 324
BtsCI GGATG 1 cut(s) 218
BtsIMutI CAGTG 2 cut(s) 17, 87
Cac8I GCNNGC 1 cut(s) 537
CaiI CAGNNNCTG 1 cut(s) 377
CciI TCATGA 2 cut(s) 406, 555
CfoI GCGC 1 cut(s) 272
Csp6I GTAC 1 cut(s) 177
CviAII CATG 2 cut(s) 407, 556
CviJI RGCY 4 cut(s) 101, 107, 374, 539
CviKI_1 RGCY 4 cut(s) 101, 107, 374, 539
CviQI GTAC 1 cut(s) 177
DpnI GATC 3 cut(s) 165, 267, 560
DpnII GATC 3 cut(s) 163, 265, 558
Eco57I CTGAAG 3 cut(s) 21, 123, 399
Eco72I CACGTG 1 cut(s) 506
EcoRII CCWGG 1 cut(s) 242
FaeI CATG 2 cut(s) 410, 559
FaiI YATR 9 cut(s) 51, 114, 189, 206, 215, 408, 431, 465, 557
FaqI GGGAC 2 cut(s) 21, 466
FatI CATG 2 cut(s) 406, 555
Fnu4HI GCNGC 1 cut(s) 423
FokI GGATG 1 cut(s) 205
Fsp4HI GCNGC 1 cut(s) 423
FspBI CTAG 2 cut(s) 306, 562
GlaI GCGC 1 cut(s) 271
GluI GCNGC 1 cut(s) 423
GsuI CTGGAG 1 cut(s) 526
HhaI GCGC 1 cut(s) 272
Hin1II CATG 2 cut(s) 410, 559
Hin6I GCGC 1 cut(s) 270
HinP1I GCGC 1 cut(s) 270
HincII GTYRAC 1 cut(s) 89
HindII GTYRAC 1 cut(s) 89
HindIII AAGCTT 1 cut(s) 105
HinfI GANTC 2 cut(s) 230, 314
HphI GGTGA 1 cut(s) 311
Hpy166II GTNNAC 1 cut(s) 89
Hpy188I TCNGA 1 cut(s) 27
Hpy188III TCNNGA 5 cut(s) 57, 234, 399, 407, 556
Hpy8I GTNNAC 1 cut(s) 89
HpyAV CCTTC 1 cut(s) 479
HpyCH4III ACNGT 2 cut(s) 12, 82
HpyCH4IV ACGT 2 cut(s) 53, 505
HpyCH4V TGCA 2 cut(s) 359, 425
HpyF10VI GCNNNNNNNGC 2 cut(s) 152, 380
HpySE526I ACGT 2 cut(s) 53, 505
Hsp92II CATG 2 cut(s) 410, 559
HspAI GCGC 1 cut(s) 270
Kzo9I GATC 3 cut(s) 163, 265, 558
LmnI GCTCC 1 cut(s) 289
LpnPI CCDG 6 cut(s) 229, 256, 384, 384, 497, 556
Lsp1109I GCAGC 1 cut(s) 409
LweI GCATC 3 cut(s) 191, 368, 524
MaeI CTAG 2 cut(s) 306, 562
MaeII ACGT 2 cut(s) 53, 505
MaeIII GTNAC 1 cut(s) 325
MalI GATC 3 cut(s) 165, 267, 560
MboI GATC 3 cut(s) 163, 265, 558
MboII GAAGA 2 cut(s) 249, 486
MflI RGATCY 1 cut(s) 163
MhlI GDGCHC 1 cut(s) 286
MluCI AATT 7 cut(s) 28, 139, 196, 201, 247, 277, 439
MmeI TCCRAC 1 cut(s) 311
MnlI CCTC 3 cut(s) 154, 339, 550
MseI TTAA 1 cut(s) 200
MslI CAYNNNNRTG 1 cut(s) 504
MspR9I CCNGG 1 cut(s) 244
MvaI CCWGG 1 cut(s) 244
MvnI CGCG 1 cut(s) 270
MwoI GCNNNNNNNGC 2 cut(s) 152, 380
NdeII GATC 3 cut(s) 163, 265, 558
NlaIII CATG 2 cut(s) 410, 559
NmuCI GTSAC 1 cut(s) 325
PagI TCATGA 2 cut(s) 406, 555
PfeI GAWTC 2 cut(s) 230, 314
PkrI GCNGC 1 cut(s) 424
PmaCI CACGTG 1 cut(s) 506
PmlI CACGTG 1 cut(s) 506
Ppu21I YACGTR 1 cut(s) 506
Psp6I CCWGG 1 cut(s) 242
PspCI CACGTG 1 cut(s) 506
PspGI CCWGG 1 cut(s) 242
PstNI CAGNNNCTG 1 cut(s) 377
PsuI RGATCY 1 cut(s) 163
RsaI GTAC 1 cut(s) 178
RsaNI GTAC 1 cut(s) 177
RseI CAYNNNNRTG 1 cut(s) 504
SaqAI TTAA 1 cut(s) 200
SatI GCNGC 1 cut(s) 423
Sau3AI GATC 3 cut(s) 163, 265, 558
ScrFI CCNGG 1 cut(s) 244
SduI GDGCHC 1 cut(s) 286
SetI ASST 8 cut(s) 56, 109, 350, 376, 420, 430, 490, 508
SfaNI GCATC 3 cut(s) 191, 368, 524
SmiMI CAYNNNNRTG 1 cut(s) 504
Sse9I AATT 7 cut(s) 28, 139, 196, 201, 247, 277, 439
SspI AATATT 1 cut(s) 226
SspMI CTAG 2 cut(s) 306, 562
StyD4I CCNGG 1 cut(s) 242
TaaI ACNGT 2 cut(s) 12, 82
TaiI ACGT 2 cut(s) 56, 508
TaqI TCGA 1 cut(s) 65
TasI AATT 7 cut(s) 28, 139, 196, 201, 247, 277, 439
TfiI GAWTC 2 cut(s) 230, 314
Tru1I TTAA 1 cut(s) 200
Tru9I TTAA 1 cut(s) 200
TscAI CASTG 2 cut(s) 17, 87
TseFI GTSAC 1 cut(s) 325
TseI GCWGC 1 cut(s) 422
Tsp45I GTSAC 1 cut(s) 325
TspDTI ATGAA 4 cut(s) 327, 423, 450, 544
TspGWI ACGGA 1 cut(s) 349
TspRI CASTG 2 cut(s) 17, 87
XapI RAATTY 4 cut(s) 28, 139, 247, 439
XspI CTAG 2 cut(s) 306, 562
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.