Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0001469

Physical Location & Seq

Genomic Coordinates Reverse (-)

17291081 .. 17303166

Gene Structure 12086 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG178000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGAGACTGGTTCCAACATCTCTTTATCAGTCCAATGGCATTAGCCATCTGGTGATCCCTACCAGAGACTACTGCTTTGCACCATCGCTGGATGATATATGTCGTGCTGTAAACATCATTAATGGCGGTGTCGAGAATGCAGGGTCCCCAAGTCAAGGTGCTACGGCTGACGATGGTGCCAAGTCCTCCCAGCGAAGGGTCTTCCGATCTATGGCTCAGCAGAATAGGACGAGAGCACGACTTAAGGCCAGTAGAGGCGCCGCCGAGGTGCTCAGATATGCAGGATCAAAGGCAAAGAGTTTAGTGCCTTGTTCTGTGGCTACTGAGGCAAGGGCTGCTATGACTCGTCGAATTCATGCTGCATTTGGTGACATGGAATGGACGCTGGCAAAAGGTTGGGCTATTCTTGAAGAGGCAGCAATGGTGGTCCTGGTGGCAACAGAGATCGCAGTGGTCAAGGTGGTTAAAGCATGGGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004439 GO:0004721 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0008138 GO:0008150 GO:0008152 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019538 GO:0034593 GO:0034595 GO:0036211 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0052866 GO:0071704 GO:0106019 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DSPc

Protein Analysis

159

Amino Acids

17.08

Weight (kDa)

9.87

Isoelectric Point (pI)

40.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001469)

Species	Orthologous Gene IDs
malus_domestica	MD01G1068900.v1.1
rosa_chinensis	RchiOBHm_Chr1g0328881 RchiOBHm_Chr2g0103941 RchiOBHm_Chr2g0148771 RchiOBHm_Chr5g0081751 RchiOBHm_Chr6g0251601 RchiOBHm_Chr6g0252891 RchiOBHm_Chr6g0261041
rosa_laevigata	RLG00000009276
rosa_multiflora	Rmu_sc0002607.1_g000054
rosa_roxburghii	Rroxscaffold_3G00226620 Rroxscaffold_3G00261660 Rroxscaffold_6G00387930 Rroxscaffold_7G00214780
rosa_rugosa	Rorug01G0154400.1 Rorug02G0266600.1 Rorug03G0008400 Rorug03G0200100 Rorug05G0519500 Rorug06G0005400.1 Rorug06G0320100 Rorug07G0042900
rosa_samantha	Rh1AG156000 Rh1AG219000 Rh1BG044200 Rh1DG160300 Rh2BG398200 Rh2BG403900 Rh2BG460500 Rh2CG000900 Rh2CG307500 Rh2CG547200 Rh2DG469900 Rh4CG118200 Rh4DG178300 Rh5CG178000 Rh5CG304800 Rh5CG363400 Rh5DG164400 Rh6AG114000 Rh6AG247400 Rh6BG059200 Rh6BG107600 Rh6CG031400 Rh6CG104700 Rh6DG029900 Rh6DG095500 Rh7BG290500
rosa_wichuraiana	Rw1G002350 Rw4G023590 Rw5G005770 Rw6G009740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	176, 257
AciI	CCGC	2 cut(s)	126, 261
AclWI	GGATC	2 cut(s)	49, 292
AcsI	RAATTY	1 cut(s)	351
AcyI	GRCGYC	1 cut(s)	258
AfiI	CCNNNNNNNGG	4 cut(s)	155, 195, 196, 211
AflII	CTTAAG	1 cut(s)	242
AgsI	TTSAA	1 cut(s)	410
AjnI	CCWGG	1 cut(s)	429
Alw21I	GWGCWC	2 cut(s)	238, 273
Alw26I	GTCTC	1 cut(s)	60
AlwI	GGATC	2 cut(s)	49, 292
AoxI	GGCC	1 cut(s)	246
ApeKI	GCWGC	3 cut(s)	335, 359, 416
ApoI	RAATTY	1 cut(s)	351
ArsI	GACNNNNNNTTYG	2 cut(s)	59, 91
AseI	ATTAAT	1 cut(s)	120
AspLEI	GCGC	1 cut(s)	260
AspS9I	GGNCC	2 cut(s)	144, 427
AsuHPI	GGTGA	2 cut(s)	64, 380
AvaII	GGWCC	2 cut(s)	144, 427
BanI	GGYRCC	2 cut(s)	176, 257
BbsI	GAAGAC	1 cut(s)	193
Bbv12I	GWGCWC	2 cut(s)	238, 273
BbvI	GCAGC	3 cut(s)	322, 346, 428
BccI	CCATC	3 cut(s)	54, 91, 167
BceAI	ACGGC	1 cut(s)	180
BciT130I	CCWGG	1 cut(s)	431
BcoDI	GTCTC	1 cut(s)	60
BfoI	RGCGCY	1 cut(s)	261
BfrI	CTTAAG	1 cut(s)	242
BisI	GCNGC	4 cut(s)	261, 336, 360, 417
BlpI	GCTNAGC	1 cut(s)	216
BlsI	GCNGC	4 cut(s)	262, 337, 361, 418
Bme1390I	CCNGG	1 cut(s)	431
Bme18I	GGWCC	2 cut(s)	144, 427
BmgT120I	GGNCC	2 cut(s)	144, 427
BmiI	GGNNCC	5 cut(s)	12, 145, 146, 178, 259
BmrFI	CCNGG	1 cut(s)	431
BpiI	GAAGAC	1 cut(s)	193
Bpu1102I	GCTNAGC	1 cut(s)	216
BsaHI	GRCGYC	1 cut(s)	258
BsaJI	CCNNGG	1 cut(s)	264
Bsc4I	CCNNNNNNNGG	4 cut(s)	155, 195, 196, 211
Bse1I	ACTGG	2 cut(s)	12, 249
Bse3DI	GCAATG	1 cut(s)	426
BseBI	CCWGG	1 cut(s)	431
BseDI	CCNNGG	1 cut(s)	264
BseGI	GGATG	1 cut(s)	97
BseLI	CCNNNNNNNGG	4 cut(s)	155, 195, 196, 211
BseMI	GCAATG	1 cut(s)	426
BseMII	CTCAG	3 cut(s)	230, 286, 315
BseNI	ACTGG	2 cut(s)	12, 249
BseXI	GCAGC	3 cut(s)	322, 346, 428
BseYI	CCCAGC	1 cut(s)	189
BshFI	GGCC	1 cut(s)	248
BshNI	GGYRCC	2 cut(s)	176, 257
BsiHKAI	GWGCWC	2 cut(s)	238, 273
BslFI	GGGAC	1 cut(s)	130
BslI	CCNNNNNNNGG	4 cut(s)	155, 195, 196, 211
BsmAI	GTCTC	1 cut(s)	60
BsmFI	GGGAC	1 cut(s)	130
BsmI	GAATGC	1 cut(s)	142
BsnI	GGCC	1 cut(s)	248
Bsp1286I	GDGCHC	2 cut(s)	238, 273
Bsp143I	GATC	4 cut(s)	54, 206, 284, 444
Bsp1720I	GCTNAGC	1 cut(s)	216
BspACI	CCGC	2 cut(s)	126, 261
BspANI	GGCC	1 cut(s)	248
BspCNI	CTCAG	3 cut(s)	229, 285, 316
BspLI	GGNNCC	5 cut(s)	12, 145, 146, 178, 259
BspPI	GGATC	2 cut(s)	49, 292
BspT107I	GGYRCC	2 cut(s)	176, 257
BspTI	CTTAAG	1 cut(s)	242
BsrDI	GCAATG	1 cut(s)	426
BsrI	ACTGG	2 cut(s)	12, 249
BssECI	CCNNGG	1 cut(s)	264
BssMI	GATC	4 cut(s)	54, 206, 284, 444
BssNI	GRCGYC	1 cut(s)	258
Bst2UI	CCWGG	1 cut(s)	431
Bst6I	CTCTTC	1 cut(s)	405
BstACI	GRCGYC	1 cut(s)	258
BstAFI	CTTAAG	1 cut(s)	242
BstAPI	GCANNNNNTGC	1 cut(s)	335
BstC8I	GCNNGC	1 cut(s)	387
BstDEI	CTNAG	3 cut(s)	216, 272, 324
BstF5I	GGATG	1 cut(s)	97
BstH2I	RGCGCY	1 cut(s)	261
BstHHI	GCGC	1 cut(s)	260
BstKTI	GATC	4 cut(s)	57, 209, 287, 447
BstMAI	GTCTC	1 cut(s)	60
BstMBI	GATC	4 cut(s)	54, 206, 284, 444
BstMWI	GCNNNNNNNGC	2 cut(s)	326, 335
BstNI	CCWGG	1 cut(s)	431
BstSCI	CCNGG	1 cut(s)	429
BstV1I	GCAGC	3 cut(s)	322, 346, 428
BstV2I	GAAGAC	1 cut(s)	193
BsuRI	GGCC	1 cut(s)	248
BtgZI	GCGATG	1 cut(s)	69
BtsCI	GGATG	1 cut(s)	97
BtsI	GCAGTG	1 cut(s)	456
BtsIMutI	CAGTG	1 cut(s)	456
Cac8I	GCNNGC	1 cut(s)	387
CfoI	GCGC	1 cut(s)	260
Cfr13I	GGNCC	2 cut(s)	144, 427
CseI	GACGC	1 cut(s)	391
CviAII	CATG	4 cut(s)	356, 373, 471, 477
CviJI	RGCY	7 cut(s)	45, 167, 215, 248, 320, 335, 401
CviKI_1	RGCY	7 cut(s)	45, 167, 215, 248, 320, 335, 401
DdeI	CTNAG	3 cut(s)	216, 272, 324
DinI	GGCGCC	1 cut(s)	259
DpnI	GATC	4 cut(s)	56, 208, 286, 446
DpnII	GATC	4 cut(s)	54, 206, 284, 444
Eam1104I	CTCTTC	1 cut(s)	405
EarI	CTCTTC	1 cut(s)	405
Eco47I	GGWCC	2 cut(s)	144, 427
EcoO109I	RGGNCCY	1 cut(s)	144
EcoRI	GAATTC	1 cut(s)	351
EcoRII	CCWGG	1 cut(s)	429
EgeI	GGCGCC	1 cut(s)	259
EheI	GGCGCC	1 cut(s)	259
FaeI	CATG	4 cut(s)	359, 376, 474, 480
FaiI	YATR	9 cut(s)	98, 100, 212, 279, 341, 357, 374, 472, 478
FaqI	GGGAC	1 cut(s)	130
FatI	CATG	4 cut(s)	355, 372, 470, 476
Fnu4HI	GCNGC	4 cut(s)	261, 336, 360, 417
FokI	GGATG	1 cut(s)	104
Fsp4HI	GCNGC	4 cut(s)	261, 336, 360, 417
GlaI	GCGC	1 cut(s)	259
GluI	GCNGC	4 cut(s)	261, 336, 360, 417
GsaI	CCCAGC	1 cut(s)	193
HaeII	RGCGCY	1 cut(s)	261
HaeIII	GGCC	1 cut(s)	248
HgaI	GACGC	1 cut(s)	391
HhaI	GCGC	1 cut(s)	260
Hin1I	GRCGYC	1 cut(s)	258
Hin1II	CATG	4 cut(s)	359, 376, 474, 480
Hin6I	GCGC	1 cut(s)	258
HinP1I	GCGC	1 cut(s)	258
HinfI	GANTC	1 cut(s)	343
HphI	GGTGA	2 cut(s)	64, 380
Hpy166II	GTNNAC	1 cut(s)	112
Hpy188I	TCNGA	2 cut(s)	206, 275
Hpy188III	TCNNGA	2 cut(s)	133, 407
Hpy8I	GTNNAC	1 cut(s)	112
Hpy99I	CGWCG	1 cut(s)	351
HpyAV	CCTTC	1 cut(s)	189
HpyCH4V	TGCA	4 cut(s)	80, 140, 281, 362
HpyF10VI	GCNNNNNNNGC	2 cut(s)	326, 335
HpyF3I	CTNAG	3 cut(s)	216, 272, 324
Hsp92I	GRCGYC	1 cut(s)	258
Hsp92II	CATG	4 cut(s)	359, 376, 474, 480
HspAI	GCGC	1 cut(s)	258
KasI	GGCGCC	1 cut(s)	257
KflI	GGGWCCC	1 cut(s)	144
Kzo9I	GATC	4 cut(s)	54, 206, 284, 444
Lsp1109I	GCAGC	3 cut(s)	322, 346, 428
MaeIII	GTNAC	1 cut(s)	368
MalI	GATC	4 cut(s)	56, 208, 286, 446
MboI	GATC	4 cut(s)	54, 206, 284, 444
MboII	GAAGA	2 cut(s)	193, 422
MhlI	GDGCHC	2 cut(s)	238, 273
MluCI	AATT	1 cut(s)	351
Mly113I	GGCGCC	1 cut(s)	258
MlyI	GAGTC	1 cut(s)	337
MmeI	TCCRAC	1 cut(s)	38
MnlI	CCTC	5 cut(s)	196, 248, 259, 319, 406
MseI	TTAA	3 cut(s)	120, 243, 465
MslI	CAYNNNNRTG	1 cut(s)	475
MspCI	CTTAAG	1 cut(s)	242
MspR9I	CCNGG	1 cut(s)	431
Mva1269I	GAATGC	1 cut(s)	142
MvaI	CCWGG	1 cut(s)	431
MwoI	GCNNNNNNNGC	2 cut(s)	326, 335
NarI	GGCGCC	1 cut(s)	258
NdeII	GATC	4 cut(s)	54, 206, 284, 444
NlaIII	CATG	4 cut(s)	359, 376, 474, 480
NlaIV	GGNNCC	5 cut(s)	12, 145, 146, 178, 259
NmeAIII	GCCGAG	1 cut(s)	289
NmuCI	GTSAC	1 cut(s)	368
PctI	GAATGC	1 cut(s)	142
PkrI	GCNGC	4 cut(s)	262, 337, 361, 418
PleI	GAGTC	1 cut(s)	337
PluTI	GGCGCC	1 cut(s)	261
PpsI	GAGTC	1 cut(s)	337
PpuMI	RGGWCCY	1 cut(s)	144
PshBI	ATTAAT	1 cut(s)	120
Psp5II	RGGWCCY	1 cut(s)	144
Psp6I	CCWGG	1 cut(s)	429
PspFI	CCCAGC	1 cut(s)	189
PspGI	CCWGG	1 cut(s)	429
PspN4I	GGNNCC	5 cut(s)	12, 145, 146, 178, 259
PspPI	GGNCC	2 cut(s)	144, 427
PspPPI	RGGWCCY	1 cut(s)	144
RseI	CAYNNNNRTG	1 cut(s)	475
SaqAI	TTAA	3 cut(s)	120, 243, 465
SatI	GCNGC	4 cut(s)	261, 336, 360, 417
Sau3AI	GATC	4 cut(s)	54, 206, 284, 444
Sau96I	GGNCC	2 cut(s)	144, 427
SchI	GAGTC	1 cut(s)	337
ScrFI	CCNGG	1 cut(s)	431
SduI	GDGCHC	2 cut(s)	238, 273
SetI	ASST	4 cut(s)	160, 270, 397, 462
SfoI	GGCGCC	1 cut(s)	259
SinI	GGWCC	2 cut(s)	144, 427
SmiMI	CAYNNNNRTG	1 cut(s)	475
SmlI	CTYRAG	1 cut(s)	242
SmoI	CTYRAG	1 cut(s)	242
Sse9I	AATT	1 cut(s)	351
SsiI	CCGC	2 cut(s)	126, 261
SspDI	GGCGCC	1 cut(s)	257
StyD4I	CCNGG	1 cut(s)	429
TaqI	TCGA	2 cut(s)	132, 349
TasI	AATT	1 cut(s)	351
TauI	GCSGC	1 cut(s)	263
Tru1I	TTAA	3 cut(s)	120, 243, 465
Tru9I	TTAA	3 cut(s)	120, 243, 465
TscAI	CASTG	1 cut(s)	456
TseFI	GTSAC	1 cut(s)	368
TseI	GCWGC	3 cut(s)	335, 359, 416
Tsp45I	GTSAC	1 cut(s)	368
TspDTI	ATGAA	1 cut(s)	344
TspRI	CASTG	1 cut(s)	456
Vha464I	CTTAAG	1 cut(s)	242
VpaK11BI	GGWCC	2 cut(s)	144, 427
VspI	ATTAAT	1 cut(s)	120
XapI	RAATTY	1 cut(s)	351

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.