Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0001469

Physical Location & Seq

Genomic Coordinates Reverse (-)

11725832 .. 11726531

Gene Structure 700 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG104700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

ATGGACTGGGAAAGCAAAATTGATCCTTTACGCTGCATATCCATGCATGAAATTACAAAGCCTAATCCATTTGCTCAGAAAGATGATGCAACTATATTTGTCAATTTCCAGCTGGGTGATCTGGAGTCAAGAGTATCACTGCAGTTTGTTTGTTTTGTTGATGAAGCATTCCACCAGATTGAAAGAAATGATAGCAATGTTAAGAAAATAGGTCTACATTGTAAAGTAACTGAGTTTCAGGACTTGAATGAGTGGCATGTGCTTAACGCCCTTCCATCATATGGCAGAGGAAGAGATGCAGCAGCTGTAAGGATCCTAAGCTGGAAAAATTGCACGCTGATCAAATTGCAGCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000145 GO:0003674 GO:0005488 GO:0005515 GO:0005543 GO:0005546 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0005938 GO:0006810 GO:0006887 GO:0006892 GO:0006893 GO:0007154 GO:0008037 GO:0008104 GO:0008150 GO:0008289 GO:0009856 GO:0009875 GO:0009987 GO:0016020 GO:0016192 GO:0017016 GO:0017048 GO:0017049 GO:0019899 GO:0022414 GO:0031267 GO:0031503 GO:0031982 GO:0032501 GO:0032940 GO:0032991 GO:0033036 GO:0034613 GO:0034629 GO:0035091 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043230 GO:0044421 GO:0044424 GO:0044444 GO:0044448 GO:0044464 GO:0044706 GO:0046903 GO:0048193 GO:0048544 GO:0051020 GO:0051179 GO:0051234 GO:0051601 GO:0051641 GO:0051704 GO:0060321 GO:0070062 GO:0070727 GO:0071944 GO:0098876 GO:0099023 GO:0099568 GO:1901981 GO:1902936 GO:1903561

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sec3-PIP2_bind Sec3_C

Protein Analysis

118

Amino Acids

13.65

Weight (kDa)

6.05

Isoelectric Point (pI)

37.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001469)

Species	Orthologous Gene IDs
malus_domestica	MD01G1068900.v1.1
rosa_chinensis	RchiOBHm_Chr1g0328881 RchiOBHm_Chr2g0103941 RchiOBHm_Chr2g0148771 RchiOBHm_Chr5g0081751 RchiOBHm_Chr6g0251601 RchiOBHm_Chr6g0252891 RchiOBHm_Chr6g0261041
rosa_laevigata	RLG00000009276
rosa_multiflora	Rmu_sc0002607.1_g000054
rosa_roxburghii	Rroxscaffold_3G00226620 Rroxscaffold_3G00261660 Rroxscaffold_6G00387930 Rroxscaffold_7G00214780
rosa_rugosa	Rorug01G0154400.1 Rorug02G0266600.1 Rorug03G0008400 Rorug03G0200100 Rorug05G0519500 Rorug06G0005400.1 Rorug06G0320100 Rorug07G0042900
rosa_samantha	Rh1AG156000 Rh1AG219000 Rh1BG044200 Rh1DG160300 Rh2BG398200 Rh2BG403900 Rh2BG460500 Rh2CG000900 Rh2CG307500 Rh2CG547200 Rh2DG469900 Rh4CG118200 Rh4DG178300 Rh5CG178000 Rh5CG304800 Rh5CG363400 Rh5DG164400 Rh6AG114000 Rh6AG247400 Rh6BG059200 Rh6BG107600 Rh6CG031400 Rh6CG104700 Rh6DG029900 Rh6DG095500 Rh7BG290500
rosa_wichuraiana	Rw1G002350 Rw4G023590 Rw5G005770 Rw6G009740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	281
AccI	GTMKAC	1 cut(s)	214
AclWI	GGATC	3 cut(s)	17, 307, 320
AfiI	CCNNNNNNNGG	1 cut(s)	281
AgsI	TTSAA	2 cut(s)	182, 247
AluBI	AGCT	4 cut(s)	112, 305, 321, 352
AluI	AGCT	4 cut(s)	112, 305, 321, 352
AlwI	GGATC	3 cut(s)	17, 307, 320
AlwNI	CAGNNNCTG	1 cut(s)	305
ApeKI	GCWGC	4 cut(s)	33, 299, 302, 349
AsuHPI	GGTGA	1 cut(s)	128
BamHI	GGATCC	1 cut(s)	312
BbvI	GCAGC	3 cut(s)	20, 311, 314
BccI	CCATC	1 cut(s)	283
BclI	TGATCA	1 cut(s)	339
BfmI	CTRYAG	1 cut(s)	140
BisI	GCNGC	4 cut(s)	34, 300, 303, 350
BlsI	GCNGC	4 cut(s)	35, 301, 304, 351
BmiI	GGNNCC	1 cut(s)	314
BmrI	ACTGGG	1 cut(s)	16
BmsI	GCATC	2 cut(s)	76, 286
BmuI	ACTGGG	1 cut(s)	16
BpmI	CTGGAG	1 cut(s)	143
Bpu10I	CCTNAGC	1 cut(s)	317
Bsc4I	CCNNNNNNNGG	1 cut(s)	281
Bse1I	ACTGG	1 cut(s)	11
Bse3DI	GCAATG	1 cut(s)	202
BseLI	CCNNNNNNNGG	1 cut(s)	281
BseMI	GCAATG	1 cut(s)	202
BseMII	CTCAG	2 cut(s)	89, 222
BseNI	ACTGG	1 cut(s)	11
BseXI	GCAGC	3 cut(s)	20, 311, 314
BseYI	CCCAGC	1 cut(s)	112
BslI	CCNNNNNNNGG	1 cut(s)	281
BsmI	GAATGC	1 cut(s)	167
Bsp143I	GATC	4 cut(s)	22, 118, 312, 339
BspCNI	CTCAG	2 cut(s)	88, 223
BspLI	GGNNCC	1 cut(s)	314
BspMAI	CTGCAG	1 cut(s)	144
BspPI	GGATC	3 cut(s)	17, 307, 320
BsrDI	GCAATG	1 cut(s)	202
BsrI	ACTGG	1 cut(s)	11
BssMI	GATC	4 cut(s)	22, 118, 312, 339
Bst6I	CTCTTC	1 cut(s)	286
BstC8I	GCNNGC	1 cut(s)	335
BstDEI	CTNAG	3 cut(s)	75, 231, 317
BstKTI	GATC	4 cut(s)	25, 121, 315, 342
BstMBI	GATC	4 cut(s)	22, 118, 312, 339
BstNSI	RCATGY	1 cut(s)	260
BstSFI	CTRYAG	1 cut(s)	140
BstV1I	GCAGC	3 cut(s)	20, 311, 314
BstX2I	RGATCY	1 cut(s)	312
BstYI	RGATCY	1 cut(s)	312
BtsI	GCAGTG	1 cut(s)	137
BtsIMutI	CAGTG	1 cut(s)	137
Cac8I	GCNNGC	1 cut(s)	335
CaiI	CAGNNNCTG	1 cut(s)	305
CviAII	CATG	3 cut(s)	43, 47, 257
CviJI	RGCY	5 cut(s)	61, 112, 305, 321, 352
CviKI_1	RGCY	5 cut(s)	61, 112, 305, 321, 352
DdeI	CTNAG	3 cut(s)	75, 231, 317
DpnI	GATC	4 cut(s)	24, 120, 314, 341
DpnII	GATC	4 cut(s)	22, 118, 312, 339
Eam1104I	CTCTTC	1 cut(s)	286
EarI	CTCTTC	1 cut(s)	286
EcoT22I	ATGCAT	1 cut(s)	48
FaeI	CATG	3 cut(s)	46, 50, 260
FaiI	YATR	7 cut(s)	38, 44, 48, 95, 258, 280, 282
FatI	CATG	3 cut(s)	42, 46, 256
FauNDI	CATATG	1 cut(s)	280
FbaI	TGATCA	1 cut(s)	339
FblI	GTMKAC	1 cut(s)	214
Fnu4HI	GCNGC	4 cut(s)	34, 300, 303, 350
Fsp4HI	GCNGC	4 cut(s)	34, 300, 303, 350
GluI	GCNGC	4 cut(s)	34, 300, 303, 350
GsaI	CCCAGC	1 cut(s)	116
GsuI	CTGGAG	1 cut(s)	143
Hin1II	CATG	3 cut(s)	46, 50, 260
HinfI	GANTC	1 cut(s)	125
HphI	GGTGA	1 cut(s)	128
Hpy166II	GTNNAC	1 cut(s)	215
Hpy188I	TCNGA	2 cut(s)	78, 356
Hpy188III	TCNNGA	3 cut(s)	122, 129, 239
Hpy8I	GTNNAC	1 cut(s)	215
HpyAV	CCTTC	1 cut(s)	281
HpyCH4V	TGCA	7 cut(s)	36, 46, 89, 142, 299, 333, 349
HpyF3I	CTNAG	3 cut(s)	75, 231, 317
Hsp92II	CATG	3 cut(s)	46, 50, 260
Ksp22I	TGATCA	1 cut(s)	339
Kzo9I	GATC	4 cut(s)	22, 118, 312, 339
LpnPI	CCDG	6 cut(s)	98, 107, 122, 188, 224, 307
Lsp1109I	GCAGC	3 cut(s)	20, 311, 314
LweI	GCATC	2 cut(s)	76, 286
MaeIII	GTNAC	1 cut(s)	226
MalI	GATC	4 cut(s)	24, 120, 314, 341
MboI	GATC	4 cut(s)	22, 118, 312, 339
MboII	GAAGA	1 cut(s)	303
MflI	RGATCY	1 cut(s)	312
MluCI	AATT	5 cut(s)	18, 51, 103, 328, 344
MlyI	GAGTC	1 cut(s)	134
MnlI	CCTC	1 cut(s)	281
Mph1103I	ATGCAT	1 cut(s)	48
MseI	TTAA	2 cut(s)	201, 264
MslI	CAYNNNNRTG	1 cut(s)	41
MspA1I	CMGCKG	2 cut(s)	112, 305
Mva1269I	GAATGC	1 cut(s)	167
NdeI	CATATG	1 cut(s)	280
NdeII	GATC	4 cut(s)	22, 118, 312, 339
NlaIII	CATG	3 cut(s)	46, 50, 260
NlaIV	GGNNCC	1 cut(s)	314
NsiI	ATGCAT	1 cut(s)	48
NspI	RCATGY	1 cut(s)	260
PctI	GAATGC	1 cut(s)	167
PflMI	CCANNNNNTGG	1 cut(s)	281
PkrI	GCNGC	4 cut(s)	35, 301, 304, 351
PleI	GAGTC	1 cut(s)	133
PpsI	GAGTC	1 cut(s)	133
PspFI	CCCAGC	1 cut(s)	112
PspN4I	GGNNCC	1 cut(s)	314
PstI	CTGCAG	1 cut(s)	144
PstNI	CAGNNNCTG	1 cut(s)	305
PsuI	RGATCY	1 cut(s)	312
PvuII	CAGCTG	2 cut(s)	112, 305
RseI	CAYNNNNRTG	1 cut(s)	41
SaqAI	TTAA	2 cut(s)	201, 264
SatI	GCNGC	4 cut(s)	34, 300, 303, 350
Sau3AI	GATC	4 cut(s)	22, 118, 312, 339
SchI	GAGTC	1 cut(s)	134
SetI	ASST	5 cut(s)	114, 214, 307, 323, 354
SfaNI	GCATC	2 cut(s)	76, 286
SfcI	CTRYAG	1 cut(s)	140
SmiMI	CAYNNNNRTG	1 cut(s)	41
Sse9I	AATT	5 cut(s)	18, 51, 103, 328, 344
TasI	AATT	5 cut(s)	18, 51, 103, 328, 344
Tru1I	TTAA	2 cut(s)	201, 264
Tru9I	TTAA	2 cut(s)	201, 264
TscAI	CASTG	1 cut(s)	144
TseI	GCWGC	4 cut(s)	33, 299, 302, 349
TspDTI	ATGAA	2 cut(s)	63, 177
TspRI	CASTG	1 cut(s)	144
Van91I	CCANNNNNTGG	1 cut(s)	281
XceI	RCATGY	1 cut(s)	260
XmiI	GTMKAC	1 cut(s)	214
Zsp2I	ATGCAT	1 cut(s)	48

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.