Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0001469

Physical Location & Seq

Genomic Coordinates Reverse (-)

50149716 .. 50153534

Gene Structure 3819 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000009276

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

ATGGAGAGAATTACAGAGAATAGGGGTTTAGGGTTGTCGTGTTGGGGTTGTCATCAACAAGGAGAAGGAAGGTGGCTCAACCTTGAGGTGGAGATTGCTTCTACTTTCAAGTTTTGTATGCAGGTTTCACCTGCTACTATCATTGTTGCTGCAATTGATTTATCTGTTGTAAAAAATTGGTCTGCAAGGTCTGAAAAAAAGGAGAAGCTTGAATCTGTCAATCAAGGTATTCCGAGAAGAATTAGTATAGACTTGAACAGTAATTTGGACCTGAATGAGTGGCCTGTGCTTAAACCCCTTCCATCTTATGGTACAAGAACAGATGCAGCAGCTGGAAGGTTCCAAGTTATCATAAGGAGGCAGAGAATAGAAAGAAACAAATCGCAGTGTCTACAGCTGAGATATAGAATGGTACTGACGATCAGAGCTCTTTCCAATGTTCAATCTATCCATAAAAGTATTCTGCAGAGTCTCAAGCAACAGCATTTGACACGGTTTCAGATAACTACAACTTCAATACACTTCATGCAAGTGGCTTTCTATGGACTATCAGTGACCTCAACAACAATCTGGATCAACATTATCTTCTCATTAGGTTTGATTTCAAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_28 Pectate_lyase_3

Protein Analysis

204

Amino Acids

23.15

Weight (kDa)

10.03

Isoelectric Point (pI)

51.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001469)

Species	Orthologous Gene IDs
malus_domestica	MD01G1068900.v1.1
rosa_chinensis	RchiOBHm_Chr1g0328881 RchiOBHm_Chr2g0103941 RchiOBHm_Chr2g0148771 RchiOBHm_Chr5g0081751 RchiOBHm_Chr6g0251601 RchiOBHm_Chr6g0252891 RchiOBHm_Chr6g0261041
rosa_laevigata	RLG00000009276
rosa_multiflora	Rmu_sc0002607.1_g000054
rosa_roxburghii	Rroxscaffold_3G00226620 Rroxscaffold_3G00261660 Rroxscaffold_6G00387930 Rroxscaffold_7G00214780
rosa_rugosa	Rorug01G0154400.1 Rorug02G0266600.1 Rorug03G0008400 Rorug03G0200100 Rorug05G0519500 Rorug06G0005400.1 Rorug06G0320100 Rorug07G0042900
rosa_samantha	Rh1AG156000 Rh1AG219000 Rh1BG044200 Rh1DG160300 Rh2BG398200 Rh2BG403900 Rh2BG460500 Rh2CG000900 Rh2CG307500 Rh2CG547200 Rh2DG469900 Rh4CG118200 Rh4DG178300 Rh5CG178000 Rh5CG304800 Rh5CG363400 Rh5DG164400 Rh6AG114000 Rh6AG247400 Rh6BG059200 Rh6BG107600 Rh6CG031400 Rh6CG104700 Rh6DG029900 Rh6DG095500 Rh7BG290500
rosa_wichuraiana	Rw1G002350 Rw4G023590 Rw5G005770 Rw6G009740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	139
Acc36I	ACCTGC	2 cut(s)	112, 139
AccB7I	CCANNNNNTGG	1 cut(s)	308
AccI	GTMKAC	1 cut(s)	391
AclWI	GGATC	1 cut(s)	581
AfaI	GTAC	2 cut(s)	313, 414
AfiI	CCNNNNNNNGG	2 cut(s)	88, 308
AgsI	TTSAA	6 cut(s)	109, 212, 256, 443, 516, 606
AjuI	GAANNNNNNNTTGG	2 cut(s)	248, 280
AluBI	AGCT	4 cut(s)	208, 332, 397, 428
AluI	AGCT	4 cut(s)	208, 332, 397, 428
Alw21I	GWGCWC	1 cut(s)	430
Alw26I	GTCTC	1 cut(s)	476
AlwI	GGATC	1 cut(s)	581
AlwNI	CAGNNNCTG	1 cut(s)	332
AoxI	GGCC	1 cut(s)	281
ApeKI	GCWGC	3 cut(s)	149, 326, 329
AspS9I	GGNCC	1 cut(s)	268
AsuHPI	GGTGA	1 cut(s)	120
AvaII	GGWCC	1 cut(s)	268
BanII	GRGCYC	1 cut(s)	430
Bbv12I	GWGCWC	1 cut(s)	430
BbvI	GCAGC	3 cut(s)	136, 338, 341
BccI	CCATC	1 cut(s)	310
BcoDI	GTCTC	1 cut(s)	476
BfmI	CTRYAG	2 cut(s)	392, 464
BfuAI	ACCTGC	2 cut(s)	112, 139
BisI	GCNGC	3 cut(s)	150, 327, 330
BlsI	GCNGC	3 cut(s)	151, 328, 331
Bme18I	GGWCC	1 cut(s)	268
BmgT120I	GGNCC	1 cut(s)	268
BmiI	GGNNCC	1 cut(s)	341
BmsI	GCATC	1 cut(s)	313
BpuEI	CTTGAG	2 cut(s)	104, 458
Bsc4I	CCNNNNNNNGG	2 cut(s)	88, 308
BseLI	CCNNNNNNNGG	2 cut(s)	88, 308
BseMII	CTCAG	1 cut(s)	389
BseXI	GCAGC	3 cut(s)	136, 338, 341
BshFI	GGCC	1 cut(s)	283
BsiHKAI	GWGCWC	1 cut(s)	430
BslI	CCNNNNNNNGG	2 cut(s)	88, 308
BsmAI	GTCTC	1 cut(s)	476
BsnI	GGCC	1 cut(s)	283
Bsp1286I	GDGCHC	1 cut(s)	430
Bsp143I	GATC	2 cut(s)	420, 573
BspANI	GGCC	1 cut(s)	283
BspCNI	CTCAG	1 cut(s)	390
BspLI	GGNNCC	1 cut(s)	341
BspMAI	CTGCAG	1 cut(s)	468
BspMI	ACCTGC	2 cut(s)	112, 139
BspPI	GGATC	1 cut(s)	581
BssMI	GATC	2 cut(s)	420, 573
Bst4CI	ACNGT	2 cut(s)	260, 495
BstDEI	CTNAG	1 cut(s)	398
BstKTI	GATC	2 cut(s)	423, 576
BstMAI	GTCTC	1 cut(s)	476
BstMBI	GATC	2 cut(s)	420, 573
BstSFI	CTRYAG	2 cut(s)	392, 464
BstV1I	GCAGC	3 cut(s)	136, 338, 341
BsuRI	GGCC	1 cut(s)	283
BtsI	GCAGTG	1 cut(s)	392
BtsIMutI	CAGTG	2 cut(s)	392, 558
BveI	ACCTGC	2 cut(s)	112, 139
CaiI	CAGNNNCTG	1 cut(s)	332
Cfr13I	GGNCC	1 cut(s)	268
Csp6I	GTAC	2 cut(s)	312, 413
CviAII	CATG	1 cut(s)	526
CviJI	RGCY	7 cut(s)	76, 208, 283, 332, 397, 428, 536
CviKI_1	RGCY	7 cut(s)	76, 208, 283, 332, 397, 428, 536
CviQI	GTAC	2 cut(s)	312, 413
DdeI	CTNAG	1 cut(s)	398
DpnI	GATC	2 cut(s)	422, 575
DpnII	GATC	2 cut(s)	420, 573
Ecl136II	GAGCTC	1 cut(s)	428
Eco24I	GRGCYC	1 cut(s)	430
Eco47I	GGWCC	1 cut(s)	268
Eco53kI	GAGCTC	1 cut(s)	428
EcoICRI	GAGCTC	1 cut(s)	428
EcoT38I	GRGCYC	1 cut(s)	430
FaeI	CATG	1 cut(s)	529
FaiI	YATR	8 cut(s)	119, 248, 309, 353, 405, 453, 527, 543
FatI	CATG	1 cut(s)	525
FblI	GTMKAC	1 cut(s)	391
Fnu4HI	GCNGC	3 cut(s)	150, 327, 330
FriOI	GRGCYC	1 cut(s)	430
Fsp4HI	GCNGC	3 cut(s)	150, 327, 330
GluI	GCNGC	3 cut(s)	150, 327, 330
HaeIII	GGCC	1 cut(s)	283
Hin1II	CATG	1 cut(s)	529
HindIII	AAGCTT	1 cut(s)	206
HinfI	GANTC	2 cut(s)	212, 469
HphI	GGTGA	1 cut(s)	120
Hpy166II	GTNNAC	1 cut(s)	392
Hpy188I	TCNGA	4 cut(s)	193, 234, 425, 501
Hpy188III	TCNNGA	1 cut(s)	571
Hpy8I	GTNNAC	1 cut(s)	392
HpyAV	CCTTC	4 cut(s)	59, 63, 308, 330
HpyCH4III	ACNGT	2 cut(s)	260, 495
HpyCH4V	TGCA	6 cut(s)	121, 152, 185, 326, 466, 529
HpyF3I	CTNAG	1 cut(s)	398
Hsp92II	CATG	1 cut(s)	529
Kzo9I	GATC	2 cut(s)	420, 573
LpnPI	CCDG	6 cut(s)	107, 144, 284, 297, 318, 556
Lsp1109I	GCAGC	3 cut(s)	136, 338, 341
LweI	GCATC	1 cut(s)	313
MaeIII	GTNAC	1 cut(s)	553
MalI	GATC	2 cut(s)	422, 575
MboI	GATC	2 cut(s)	420, 573
MboII	GAAGA	2 cut(s)	249, 577
MfeI	CAATTG	1 cut(s)	153
MhlI	GDGCHC	1 cut(s)	430
MluCI	AATT	5 cut(s)	9, 153, 175, 240, 262
MlyI	GAGTC	1 cut(s)	478
MnlI	CCTC	3 cut(s)	79, 351, 568
MseI	TTAA	2 cut(s)	291, 610
MslI	CAYNNNNRTG	1 cut(s)	530
MspA1I	CMGCKG	2 cut(s)	332, 397
MunI	CAATTG	1 cut(s)	153
NdeII	GATC	2 cut(s)	420, 573
NlaIII	CATG	1 cut(s)	529
NlaIV	GGNNCC	1 cut(s)	341
NmuCI	GTSAC	1 cut(s)	553
PaqCI	CACCTGC	1 cut(s)	139
PfeI	GAWTC	1 cut(s)	212
PflMI	CCANNNNNTGG	1 cut(s)	308
PkrI	GCNGC	3 cut(s)	151, 328, 331
PleI	GAGTC	1 cut(s)	477
PpsI	GAGTC	1 cut(s)	477
Psp124BI	GAGCTC	1 cut(s)	430
PspN4I	GGNNCC	1 cut(s)	341
PspPI	GGNCC	1 cut(s)	268
PstI	CTGCAG	1 cut(s)	468
PstNI	CAGNNNCTG	1 cut(s)	332
PvuII	CAGCTG	2 cut(s)	332, 397
RsaI	GTAC	2 cut(s)	313, 414
RsaNI	GTAC	2 cut(s)	312, 413
RseI	CAYNNNNRTG	1 cut(s)	530
SacI	GAGCTC	1 cut(s)	430
SaqAI	TTAA	2 cut(s)	291, 610
SatI	GCNGC	3 cut(s)	150, 327, 330
Sau3AI	GATC	2 cut(s)	420, 573
Sau96I	GGNCC	1 cut(s)	268
SchI	GAGTC	1 cut(s)	478
SduI	GDGCHC	1 cut(s)	430
SfaNI	GCATC	1 cut(s)	313
SfcI	CTRYAG	2 cut(s)	392, 464
SinI	GGWCC	1 cut(s)	268
SmiMI	CAYNNNNRTG	1 cut(s)	530
SmlI	CTYRAG	2 cut(s)	83, 473
SmoI	CTYRAG	2 cut(s)	83, 473
Sse9I	AATT	5 cut(s)	9, 153, 175, 240, 262
SstI	GAGCTC	1 cut(s)	430
TaaI	ACNGT	2 cut(s)	260, 495
TasI	AATT	5 cut(s)	9, 153, 175, 240, 262
TfiI	GAWTC	1 cut(s)	212
Tru1I	TTAA	2 cut(s)	291, 610
Tru9I	TTAA	2 cut(s)	291, 610
TscAI	CASTG	2 cut(s)	392, 558
TseFI	GTSAC	1 cut(s)	553
TseI	GCWGC	3 cut(s)	149, 326, 329
Tsp45I	GTSAC	1 cut(s)	553
TspDTI	ATGAA	1 cut(s)	514
TspRI	CASTG	2 cut(s)	392, 558
Van91I	CCANNNNNTGG	1 cut(s)	308
VpaK11BI	GGWCC	1 cut(s)	268
XmiI	GTMKAC	1 cut(s)	391

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.