Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002607.1

Orthogroup ID

OG0001469

Physical Location & Seq

Genomic Coordinates Reverse (-)

257170 .. 262799

Gene Structure 5630 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002607.1_g000054.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

atgaagcgaactgagacatccactcgggcctatcagaacggtggtggttggtctgtcacattgtttgtattgttaggtgcggttccattccctactgatgtgcctcgcctaaaggaggtcggagttcgtggagtcatcacacttaatgagccatacgagactttggttccaacatctctttatcagtccaatggcattagccatctgcggtgcttgggccagcggagccttgttttagcagtggctcctagtgggtcagcggagcttactagctgtggaagctttggtcggtggcggcttagcggaggaagttgggcagtggtgcttagcggaggcagctggatggcagcggaggattatccaatgaagacggctagcgctcggatgagctcaatcagatcagcggtgttgtggtcaggggtggtgtttggcctcagcgaagaggatgggagggcctcagcagagatgcctagtgccagcggtgtttggtcagcggcagtgaggttggcggagtggagcctttggacggctgagcggagggcggagcattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004439 GO:0004721 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0008138 GO:0008150 GO:0008152 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019538 GO:0034593 GO:0034595 GO:0036211 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0052866 GO:0071704 GO:0106019 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DSPc

Protein Analysis

183

Amino Acids

19.64

Weight (kDa)

8.71

Isoelectric Point (pI)

50.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001469)

Species	Orthologous Gene IDs
malus_domestica	MD01G1068900.v1.1
rosa_chinensis	RchiOBHm_Chr1g0328881 RchiOBHm_Chr2g0103941 RchiOBHm_Chr2g0148771 RchiOBHm_Chr5g0081751 RchiOBHm_Chr6g0251601 RchiOBHm_Chr6g0252891 RchiOBHm_Chr6g0261041
rosa_laevigata	RLG00000009276
rosa_multiflora	Rmu_sc0002607.1_g000054
rosa_roxburghii	Rroxscaffold_3G00226620 Rroxscaffold_3G00261660 Rroxscaffold_6G00387930 Rroxscaffold_7G00214780
rosa_rugosa	Rorug01G0154400.1 Rorug02G0266600.1 Rorug03G0008400 Rorug03G0200100 Rorug05G0519500 Rorug06G0005400.1 Rorug06G0320100 Rorug07G0042900
rosa_samantha	Rh1AG156000 Rh1AG219000 Rh1BG044200 Rh1DG160300 Rh2BG398200 Rh2BG403900 Rh2BG460500 Rh2CG000900 Rh2CG307500 Rh2CG547200 Rh2DG469900 Rh4CG118200 Rh4DG178300 Rh5CG178000 Rh5CG304800 Rh5CG363400 Rh5DG164400 Rh6AG114000 Rh6AG247400 Rh6BG059200 Rh6BG107600 Rh6CG031400 Rh6CG104700 Rh6DG029900 Rh6DG095500 Rh7BG290500
rosa_wichuraiana	Rw1G002350 Rw4G023590 Rw5G005770 Rw6G009740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	535
AfeI	AGCGCT	1 cut(s)	379
AfiI	CCNNNNNNNGG	2 cut(s)	115, 526
AluBI	AGCT	5 cut(s)	265, 273, 282, 339, 390
AluI	AGCT	5 cut(s)	265, 273, 282, 339, 390
Alw21I	GWGCWC	1 cut(s)	392
Alw26I	GTCTC	2 cut(s)	8, 152
Ama87I	CYCGRG	1 cut(s)	24
Aor51HI	AGCGCT	1 cut(s)	379
AoxI	GGCC	4 cut(s)	27, 217, 430, 453
ApeKI	GCWGC	2 cut(s)	336, 347
AspLEI	GCGC	1 cut(s)	380
AspS9I	GGNCC	3 cut(s)	27, 217, 453
AsuNHI	GCTAGC	1 cut(s)	374
AvaI	CYCGRG	1 cut(s)	24
BanII	GRGCYC	1 cut(s)	392
BbsI	GAAGAC	1 cut(s)	374
Bbv12I	GWGCWC	1 cut(s)	392
BbvCI	CCTCAGC	2 cut(s)	434, 457
BbvI	GCAGC	2 cut(s)	348, 359
BccI	CCATC	3 cut(s)	210, 337, 440
BceAI	ACGGC	2 cut(s)	387, 543
BcoDI	GTCTC	2 cut(s)	8, 152
BfaI	CTAG	4 cut(s)	249, 270, 375, 471
BfoI	RGCGCY	1 cut(s)	381
BisI	GCNGC	4 cut(s)	296, 337, 348, 495
BlpI	GCTNAGC	3 cut(s)	299, 326, 531
BlsI	GCNGC	4 cut(s)	297, 338, 349, 496
BmeT110I	CYCGRG	1 cut(s)	24
BmgT120I	GGNCC	3 cut(s)	27, 217, 453
BmiI	GGNNCC	5 cut(s)	84, 168, 227, 246, 518
BmsI	GCATC	1 cut(s)	456
BmtI	GCTAGC	1 cut(s)	378
BpiI	GAAGAC	1 cut(s)	374
Bpu10I	CCTNAGC	2 cut(s)	434, 457
Bpu1102I	GCTNAGC	3 cut(s)	299, 326, 531
Bsc4I	CCNNNNNNNGG	2 cut(s)	115, 526
BseGI	GGATG	4 cut(s)	17, 348, 390, 451
BseLI	CCNNNNNNNGG	2 cut(s)	115, 526
BseMII	CTCAG	3 cut(s)	448, 471, 522
BseXI	GCAGC	2 cut(s)	348, 359
BshFI	GGCC	4 cut(s)	29, 219, 432, 455
BsiHKAI	GWGCWC	1 cut(s)	392
BsiHKCI	CYCGRG	1 cut(s)	24
BslI	CCNNNNNNNGG	2 cut(s)	115, 526
BsmAI	GTCTC	2 cut(s)	8, 152
BsnI	GGCC	4 cut(s)	29, 219, 432, 455
BsoBI	CYCGRG	1 cut(s)	24
Bsp1286I	GDGCHC	1 cut(s)	392
Bsp143I	GATC	1 cut(s)	398
Bsp1720I	GCTNAGC	3 cut(s)	299, 326, 531
BspANI	GGCC	4 cut(s)	29, 219, 432, 455
BspCNI	CTCAG	4 cut(s)	4, 447, 470, 523
BspLI	GGNNCC	5 cut(s)	84, 168, 227, 246, 518
BspOI	GCTAGC	1 cut(s)	378
BsrBI	CCGCTC	1 cut(s)	535
BssMI	GATC	1 cut(s)	398
Bst4CI	ACNGT	1 cut(s)	41
Bst6I	CTCTTC	1 cut(s)	435
BstC8I	GCNNGC	3 cut(s)	221, 376, 478
BstDEI	CTNAG	6 cut(s)	12, 299, 326, 434, 457, 531
BstENI	CCTNNNNNAGG	1 cut(s)	113
BstF5I	GGATG	4 cut(s)	17, 348, 390, 451
BstH2I	RGCGCY	1 cut(s)	381
BstHHI	GCGC	1 cut(s)	380
BstKTI	GATC	1 cut(s)	401
BstMAI	GTCTC	2 cut(s)	8, 152
BstMBI	GATC	1 cut(s)	398
BstMWI	GCNNNNNNNGC	3 cut(s)	225, 279, 336
BstV1I	GCAGC	2 cut(s)	348, 359
BstV2I	GAAGAC	1 cut(s)	374
BsuRI	GGCC	4 cut(s)	29, 219, 432, 455
BtsCI	GGATG	4 cut(s)	17, 348, 390, 451
BtsI	GCAGTG	3 cut(s)	246, 324, 504
BtsIMutI	CAGTG	3 cut(s)	246, 324, 504
Cac8I	GCNNGC	3 cut(s)	221, 376, 478
CfoI	GCGC	1 cut(s)	380
Cfr13I	GGNCC	3 cut(s)	27, 217, 453
DdeI	CTNAG	6 cut(s)	12, 299, 326, 434, 457, 531
DpnI	GATC	1 cut(s)	400
DpnII	GATC	1 cut(s)	398
Eam1104I	CTCTTC	1 cut(s)	435
EarI	CTCTTC	1 cut(s)	435
EciI	GGCGGA	1 cut(s)	524
Ecl136II	GAGCTC	1 cut(s)	390
Eco24I	GRGCYC	1 cut(s)	392
Eco47III	AGCGCT	1 cut(s)	379
Eco53kI	GAGCTC	1 cut(s)	390
Eco88I	CYCGRG	1 cut(s)	24
EcoICRI	GAGCTC	1 cut(s)	390
EcoNI	CCTNNNNNAGG	1 cut(s)	113
EcoO109I	RGGNCCY	1 cut(s)	453
EcoT38I	GRGCYC	1 cut(s)	392
FaiI	YATR	1 cut(s)	154
Fnu4HI	GCNGC	4 cut(s)	296, 337, 348, 495
FokI	GGATG	4 cut(s)	4, 355, 397, 458
FriOI	GRGCYC	1 cut(s)	392
Fsp4HI	GCNGC	4 cut(s)	296, 337, 348, 495
FspBI	CTAG	4 cut(s)	249, 270, 375, 471
GlaI	GCGC	1 cut(s)	379
GluI	GCNGC	4 cut(s)	296, 337, 348, 495
HaeII	RGCGCY	1 cut(s)	381
HaeIII	GGCC	4 cut(s)	29, 219, 432, 455
HhaI	GCGC	1 cut(s)	380
Hin6I	GCGC	1 cut(s)	378
HinP1I	GCGC	1 cut(s)	378
HindIII	AAGCTT	1 cut(s)	280
HinfI	GANTC	1 cut(s)	132
Hpy188I	TCNGA	4 cut(s)	36, 122, 384, 398
HpyCH4III	ACNGT	1 cut(s)	41
HpyF10VI	GCNNNNNNNGC	3 cut(s)	225, 279, 336
HpyF3I	CTNAG	6 cut(s)	12, 299, 326, 434, 457, 531
HspAI	GCGC	1 cut(s)	378
Kzo9I	GATC	1 cut(s)	398
LmnI	GCTCC	5 cut(s)	225, 250, 262, 516, 544
LpnPI	CCDG	4 cut(s)	233, 325, 402, 490
Lsp1109I	GCAGC	2 cut(s)	348, 359
LweI	GCATC	1 cut(s)	456
MaeI	CTAG	4 cut(s)	249, 270, 375, 471
MaeIII	GTNAC	1 cut(s)	55
MalI	GATC	1 cut(s)	400
MbiI	CCGCTC	1 cut(s)	535
MboI	GATC	1 cut(s)	398
MboII	GAAGA	2 cut(s)	379, 452
MhlI	GDGCHC	1 cut(s)	392
MlyI	GAGTC	1 cut(s)	141
MmeI	TCCRAC	2 cut(s)	100, 194
MseI	TTAA	2 cut(s)	144, 550
MspA1I	CMGCKG	7 cut(s)	223, 260, 339, 350, 404, 480, 494
MwoI	GCNNNNNNNGC	3 cut(s)	225, 279, 336
NdeII	GATC	1 cut(s)	398
NheI	GCTAGC	1 cut(s)	374
NlaIV	GGNNCC	5 cut(s)	84, 168, 227, 246, 518
NmuCI	GTSAC	1 cut(s)	55
PkrI	GCNGC	4 cut(s)	297, 338, 349, 496
PleI	GAGTC	1 cut(s)	140
PpsI	GAGTC	1 cut(s)	140
Psp124BI	GAGCTC	1 cut(s)	392
PspN4I	GGNNCC	5 cut(s)	84, 168, 227, 246, 518
PspPI	GGNCC	3 cut(s)	27, 217, 453
PvuII	CAGCTG	1 cut(s)	339
SacI	GAGCTC	1 cut(s)	392
SaqAI	TTAA	2 cut(s)	144, 550
SatI	GCNGC	4 cut(s)	296, 337, 348, 495
Sau3AI	GATC	1 cut(s)	398
Sau96I	GGNCC	3 cut(s)	27, 217, 453
SchI	GAGTC	1 cut(s)	141
SduI	GDGCHC	1 cut(s)	392
SetI	ASST	8 cut(s)	79, 120, 267, 275, 284, 341, 392, 506
SfaNI	GCATC	1 cut(s)	456
SspMI	CTAG	4 cut(s)	249, 270, 375, 471
SstI	GAGCTC	1 cut(s)	392
TaaI	ACNGT	1 cut(s)	41
TauI	GCSGC	2 cut(s)	298, 497
Tru1I	TTAA	2 cut(s)	144, 550
Tru9I	TTAA	2 cut(s)	144, 550
TscAI	CASTG	3 cut(s)	246, 324, 504
TseFI	GTSAC	1 cut(s)	55
TseI	GCWGC	2 cut(s)	336, 347
Tsp45I	GTSAC	1 cut(s)	55
TspDTI	ATGAA	2 cut(s)	17, 380
TspRI	CASTG	3 cut(s)	246, 324, 504
XagI	CCTNNNNNAGG	1 cut(s)	113
XspI	CTAG	4 cut(s)	249, 270, 375, 471

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.