Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0001469

Physical Location & Seq

Genomic Coordinates Reverse (-)

2771205 .. 2780307

Gene Structure 9103 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG029900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

ATGTTGGGACAGTGTAATTACAATCAGCATTCTGCTTCAGGAACAACTCATAAGTCAAGAAAATCGAAGAGATGGAGAACAGTGTGTCAACAACAAACGGCTGAGGCTTCGCATAGTTTATGTGGAAATGACGAACAAAATTCTGCTATAATGGTGAACGAGGATCTATTAGTTGGTACAGCATCACATATTGATAATTCAATTATGGGAGACATGCCATCCAATACTATATCAAGAAGAACCAGGAGAATGTTGAGACAATGTGATCGCACTGAAAATTGTGCTCCAACAAATGTGTTCTTTACTAGCGATGAATCTCACCAAGTCATATCACGGAAGTCAAAGAGGTGGAAAGCTGCATCTCAGCAACCAGCTACTGAAGCATTAGATACTTTATCTGGAAATCATGAACAAAACGTTGCTGCACCTATAAATGAGAATTTATTAGTTGGGACAGCATCACATATCGATTATTCAATCACAGAAGAGACTCGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

165

Amino Acids

18.39

Weight (kDa)

7.04

Isoelectric Point (pI)

56.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001469)

Species	Orthologous Gene IDs
malus_domestica	MD01G1068900.v1.1
rosa_chinensis	RchiOBHm_Chr1g0328881 RchiOBHm_Chr2g0103941 RchiOBHm_Chr2g0148771 RchiOBHm_Chr5g0081751 RchiOBHm_Chr6g0251601 RchiOBHm_Chr6g0252891 RchiOBHm_Chr6g0261041
rosa_laevigata	RLG00000009276
rosa_multiflora	Rmu_sc0002607.1_g000054
rosa_roxburghii	Rroxscaffold_3G00226620 Rroxscaffold_3G00261660 Rroxscaffold_6G00387930 Rroxscaffold_7G00214780
rosa_rugosa	Rorug01G0154400.1 Rorug02G0266600.1 Rorug03G0008400 Rorug03G0200100 Rorug05G0519500 Rorug06G0005400.1 Rorug06G0320100 Rorug07G0042900
rosa_samantha	Rh1AG156000 Rh1AG219000 Rh1BG044200 Rh1DG160300 Rh2BG398200 Rh2BG403900 Rh2BG460500 Rh2CG000900 Rh2CG307500 Rh2CG547200 Rh2DG469900 Rh4CG118200 Rh4DG178300 Rh5CG178000 Rh5CG304800 Rh5CG363400 Rh5DG164400 Rh6AG114000 Rh6AG247400 Rh6BG059200 Rh6BG107600 Rh6CG031400 Rh6CG104700 Rh6DG029900 Rh6DG095500 Rh7BG290500
rosa_wichuraiana	Rw1G002350 Rw4G023590 Rw5G005770 Rw6G009740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclI	AACGTT	1 cut(s)	417
AclWI	GGATC	1 cut(s)	171
AcsI	RAATTY	2 cut(s)	139, 439
AcuI	CTGAAG	2 cut(s)	21, 399
AfaI	GTAC	1 cut(s)	178
AgsI	TTSAA	2 cut(s)	201, 477
AjnI	CCWGG	1 cut(s)	242
AluBI	AGCT	2 cut(s)	356, 374
AluI	AGCT	2 cut(s)	356, 374
Alw21I	GWGCWC	1 cut(s)	286
Alw26I	GTCTC	3 cut(s)	204, 250, 482
AlwI	GGATC	1 cut(s)	171
AlwNI	CAGNNNCTG	1 cut(s)	377
ApeKI	GCWGC	2 cut(s)	356, 422
ApoI	RAATTY	2 cut(s)	139, 439
AsuHPI	GGTGA	2 cut(s)	166, 311
Bbv12I	GWGCWC	1 cut(s)	286
BbvCI	CCTCAGC	1 cut(s)	102
BbvI	GCAGC	2 cut(s)	343, 409
BccI	CCATC	2 cut(s)	66, 226
BceAI	ACGGC	1 cut(s)	114
BciT130I	CCWGG	1 cut(s)	244
BcoDI	GTCTC	3 cut(s)	204, 250, 482
BfaI	CTAG	1 cut(s)	306
BisI	GCNGC	2 cut(s)	357, 423
BlsI	GCNGC	2 cut(s)	358, 424
Bme1390I	CCNGG	1 cut(s)	244
BmrFI	CCNGG	1 cut(s)	244
BmsI	GCATC	3 cut(s)	191, 368, 467
Bpu10I	CCTNAGC	1 cut(s)	102
Bsa29I	ATCGAT	1 cut(s)	468
BseBI	CCWGG	1 cut(s)	244
BseCI	ATCGAT	1 cut(s)	468
BseGI	GGATG	1 cut(s)	218
BseMII	CTCAG	2 cut(s)	93, 377
BseXI	GCAGC	2 cut(s)	343, 409
BsgI	GTGCAG	1 cut(s)	408
BshVI	ATCGAT	1 cut(s)	468
BsiHKAI	GWGCWC	1 cut(s)	286
BslFI	GGGAC	2 cut(s)	21, 466
BsmAI	GTCTC	3 cut(s)	204, 250, 482
BsmFI	GGGAC	2 cut(s)	21, 466
BsmI	GAATGC	1 cut(s)	28
Bsp1286I	GDGCHC	1 cut(s)	286
Bsp143I	GATC	2 cut(s)	163, 265
BspCNI	CTCAG	2 cut(s)	94, 376
BspDI	ATCGAT	1 cut(s)	468
BspHI	TCATGA	1 cut(s)	406
BspPI	GGATC	1 cut(s)	171
BssMI	GATC	2 cut(s)	163, 265
Bst2UI	CCWGG	1 cut(s)	244
Bst4CI	ACNGT	2 cut(s)	12, 82
Bst6I	CTCTTC	2 cut(s)	62, 480
BstDEI	CTNAG	2 cut(s)	102, 363
BstF5I	GGATG	1 cut(s)	218
BstKTI	GATC	2 cut(s)	166, 268
BstMAI	GTCTC	3 cut(s)	204, 250, 482
BstMBI	GATC	2 cut(s)	163, 265
BstMWI	GCNNNNNNNGC	1 cut(s)	380
BstNI	CCWGG	1 cut(s)	244
BstNSI	RCATGY	1 cut(s)	217
BstSCI	CCNGG	1 cut(s)	242
BstV1I	GCAGC	2 cut(s)	343, 409
BstX2I	RGATCY	1 cut(s)	163
BstYI	RGATCY	1 cut(s)	163
Bsu15I	ATCGAT	1 cut(s)	468
BsuTUI	ATCGAT	1 cut(s)	468
BtgZI	GCGATG	1 cut(s)	324
BtsCI	GGATG	1 cut(s)	218
BtsIMutI	CAGTG	3 cut(s)	17, 87, 270
CaiI	CAGNNNCTG	1 cut(s)	377
CciI	TCATGA	1 cut(s)	406
ClaI	ATCGAT	1 cut(s)	468
Csp6I	GTAC	1 cut(s)	177
CviAII	CATG	2 cut(s)	214, 407
CviJI	RGCY	4 cut(s)	101, 107, 356, 374
CviKI_1	RGCY	4 cut(s)	101, 107, 356, 374
CviQI	GTAC	1 cut(s)	177
DdeI	CTNAG	2 cut(s)	102, 363
DpnI	GATC	2 cut(s)	165, 267
DpnII	GATC	2 cut(s)	163, 265
Eam1104I	CTCTTC	2 cut(s)	62, 480
EarI	CTCTTC	2 cut(s)	62, 480
Eco57I	CTGAAG	2 cut(s)	21, 399
EcoRII	CCWGG	1 cut(s)	242
FaeI	CATG	2 cut(s)	217, 410
FaqI	GGGAC	2 cut(s)	21, 466
FatI	CATG	2 cut(s)	213, 406
Fnu4HI	GCNGC	2 cut(s)	357, 423
FokI	GGATG	1 cut(s)	205
Fsp4HI	GCNGC	2 cut(s)	357, 423
FspBI	CTAG	1 cut(s)	306
GluI	GCNGC	2 cut(s)	357, 423
Hin1II	CATG	2 cut(s)	217, 410
HincII	GTYRAC	1 cut(s)	89
HindII	GTYRAC	1 cut(s)	89
HinfI	GANTC	2 cut(s)	314, 490
HphI	GGTGA	2 cut(s)	166, 311
Hpy166II	GTNNAC	2 cut(s)	89, 157
Hpy188III	TCNNGA	5 cut(s)	39, 57, 234, 399, 407
Hpy8I	GTNNAC	2 cut(s)	89, 157
HpyCH4III	ACNGT	2 cut(s)	12, 82
HpyCH4IV	ACGT	1 cut(s)	417
HpyCH4V	TGCA	2 cut(s)	359, 425
HpyF10VI	GCNNNNNNNGC	1 cut(s)	380
HpyF3I	CTNAG	2 cut(s)	102, 363
HpySE526I	ACGT	1 cut(s)	417
Hsp92II	CATG	2 cut(s)	217, 410
Kzo9I	GATC	2 cut(s)	163, 265
LmnI	GCTCC	1 cut(s)	289
LpnPI	CCDG	5 cut(s)	24, 229, 256, 384, 384
Lsp1109I	GCAGC	2 cut(s)	343, 409
LweI	GCATC	3 cut(s)	191, 368, 467
MaeI	CTAG	1 cut(s)	306
MaeII	ACGT	1 cut(s)	417
MalI	GATC	2 cut(s)	165, 267
MboI	GATC	2 cut(s)	163, 265
MboII	GAAGA	3 cut(s)	79, 249, 497
MflI	RGATCY	1 cut(s)	163
MhlI	GDGCHC	1 cut(s)	286
MluCI	AATT	6 cut(s)	16, 139, 196, 201, 277, 439
MlyI	GAGTC	1 cut(s)	484
MmeI	TCCRAC	1 cut(s)	311
MnlI	CCTC	3 cut(s)	97, 154, 339
MspR9I	CCNGG	1 cut(s)	244
Mva1269I	GAATGC	1 cut(s)	28
MvaI	CCWGG	1 cut(s)	244
MwoI	GCNNNNNNNGC	1 cut(s)	380
NdeII	GATC	2 cut(s)	163, 265
NlaIII	CATG	2 cut(s)	217, 410
NspI	RCATGY	1 cut(s)	217
PagI	TCATGA	1 cut(s)	406
PctI	GAATGC	1 cut(s)	28
PfeI	GAWTC	1 cut(s)	314
PkrI	GCNGC	2 cut(s)	358, 424
PleI	GAGTC	1 cut(s)	484
PpsI	GAGTC	1 cut(s)	484
Psp1406I	AACGTT	1 cut(s)	417
Psp6I	CCWGG	1 cut(s)	242
PspGI	CCWGG	1 cut(s)	242
PstNI	CAGNNNCTG	1 cut(s)	377
PsuI	RGATCY	1 cut(s)	163
RsaI	GTAC	1 cut(s)	178
RsaNI	GTAC	1 cut(s)	177
SatI	GCNGC	2 cut(s)	357, 423
Sau3AI	GATC	2 cut(s)	163, 265
SchI	GAGTC	1 cut(s)	484
ScrFI	CCNGG	1 cut(s)	244
SduI	GDGCHC	1 cut(s)	286
SetI	ASST	5 cut(s)	350, 358, 376, 420, 430
SfaNI	GCATC	3 cut(s)	191, 368, 467
Sse9I	AATT	6 cut(s)	16, 139, 196, 201, 277, 439
SspMI	CTAG	1 cut(s)	306
StyD4I	CCNGG	1 cut(s)	242
TaaI	ACNGT	2 cut(s)	12, 82
TaiI	ACGT	1 cut(s)	420
TaqI	TCGA	2 cut(s)	65, 468
TasI	AATT	6 cut(s)	16, 139, 196, 201, 277, 439
TfiI	GAWTC	1 cut(s)	314
TscAI	CASTG	3 cut(s)	17, 87, 277
TseI	GCWGC	2 cut(s)	356, 422
TspDTI	ATGAA	2 cut(s)	327, 423
TspGWI	ACGGA	1 cut(s)	349
TspRI	CASTG	3 cut(s)	17, 87, 277
XapI	RAATTY	2 cut(s)	139, 439
XceI	RCATGY	1 cut(s)	217
XspI	CTAG	1 cut(s)	306

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.