No description available
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| malus_domestica | MD01G1068900.v1.1 |
| rosa_chinensis | RchiOBHm_Chr1g0328881 RchiOBHm_Chr2g0103941 RchiOBHm_Chr2g0148771 RchiOBHm_Chr5g0081751 RchiOBHm_Chr6g0251601 RchiOBHm_Chr6g0252891 RchiOBHm_Chr6g0261041 |
| rosa_laevigata | RLG00000009276 |
| rosa_multiflora | Rmu_sc0002607.1_g000054 |
| rosa_roxburghii | Rroxscaffold_3G00226620 Rroxscaffold_3G00261660 Rroxscaffold_6G00387930 Rroxscaffold_7G00214780 |
| rosa_rugosa | Rorug01G0154400.1 Rorug02G0266600.1 Rorug03G0008400 Rorug03G0200100 Rorug05G0519500 Rorug06G0005400.1 Rorug06G0320100 Rorug07G0042900 |
| rosa_samantha | Rh1AG156000 Rh1AG219000 Rh1BG044200 Rh1DG160300 Rh2BG398200 Rh2BG403900 Rh2BG460500 Rh2CG000900 Rh2CG307500 Rh2CG547200 Rh2DG469900 Rh4CG118200 Rh4DG178300 Rh5CG178000 Rh5CG304800 Rh5CG363400 Rh5DG164400 Rh6AG114000 Rh6AG247400 Rh6BG059200 Rh6BG107600 Rh6CG031400 Rh6CG104700 Rh6DG029900 Rh6DG095500 Rh7BG290500 |
| rosa_wichuraiana | Rw1G002350 Rw4G023590 Rw5G005770 Rw6G009740 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 1 cut(s) | 270 |
| AclWI | GGATC | 1 cut(s) | 171 |
| AcsI | RAATTY | 2 cut(s) | 28, 139 |
| AcuI | CTGAAG | 2 cut(s) | 21, 123 |
| AfaI | GTAC | 1 cut(s) | 178 |
| AgsI | TTSAA | 2 cut(s) | 201, 288 |
| AluBI | AGCT | 2 cut(s) | 107, 356 |
| AluI | AGCT | 2 cut(s) | 107, 356 |
| Alw26I | GTCTC | 1 cut(s) | 250 |
| AlwI | GGATC | 1 cut(s) | 171 |
| ApoI | RAATTY | 2 cut(s) | 28, 139 |
| AspLEI | GCGC | 1 cut(s) | 272 |
| AsuHPI | GGTGA | 1 cut(s) | 311 |
| BccI | CCATC | 2 cut(s) | 66, 226 |
| BceAI | ACGGC | 1 cut(s) | 114 |
| BclI | TGATCA | 1 cut(s) | 16 |
| BcoDI | GTCTC | 1 cut(s) | 250 |
| BfaI | CTAG | 1 cut(s) | 306 |
| BmsI | GCATC | 1 cut(s) | 191 |
| BsaBI | GATNNNNATC | 1 cut(s) | 21 |
| Bse8I | GATNNNNATC | 1 cut(s) | 21 |
| BseGI | GGATG | 1 cut(s) | 218 |
| BseJI | GATNNNNATC | 1 cut(s) | 21 |
| Bsh1236I | CGCG | 1 cut(s) | 270 |
| BslFI | GGGAC | 1 cut(s) | 21 |
| BsmAI | GTCTC | 1 cut(s) | 250 |
| BsmFI | GGGAC | 1 cut(s) | 21 |
| Bsp143I | GATC | 4 cut(s) | 16, 62, 163, 265 |
| BspFNI | CGCG | 1 cut(s) | 270 |
| BspPI | GGATC | 1 cut(s) | 171 |
| BssMI | GATC | 4 cut(s) | 16, 62, 163, 265 |
| Bst4CI | ACNGT | 6 cut(s) | 12, 82, 229, 391, 399, 439 |
| BstF5I | GGATG | 1 cut(s) | 218 |
| BstFNI | CGCG | 1 cut(s) | 270 |
| BstHHI | GCGC | 1 cut(s) | 272 |
| BstKTI | GATC | 4 cut(s) | 19, 65, 166, 268 |
| BstMAI | GTCTC | 1 cut(s) | 250 |
| BstMBI | GATC | 4 cut(s) | 16, 62, 163, 265 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 152 |
| BstUI | CGCG | 1 cut(s) | 270 |
| BstX2I | RGATCY | 1 cut(s) | 163 |
| BstYI | RGATCY | 1 cut(s) | 163 |
| BtgZI | GCGATG | 1 cut(s) | 324 |
| BtsCI | GGATG | 1 cut(s) | 218 |
| BtsIMutI | CAGTG | 4 cut(s) | 17, 87, 387, 395 |
| CfoI | GCGC | 1 cut(s) | 272 |
| CseI | GACGC | 1 cut(s) | 368 |
| Csp6I | GTAC | 1 cut(s) | 177 |
| CviJI | RGCY | 3 cut(s) | 101, 107, 356 |
| CviKI_1 | RGCY | 3 cut(s) | 101, 107, 356 |
| CviQI | GTAC | 1 cut(s) | 177 |
| DpnI | GATC | 4 cut(s) | 18, 64, 165, 267 |
| DpnII | GATC | 4 cut(s) | 16, 62, 163, 265 |
| Eco57I | CTGAAG | 2 cut(s) | 21, 123 |
| EcoRI | GAATTC | 1 cut(s) | 28 |
| FaiI | YATR | 9 cut(s) | 51, 114, 189, 206, 215, 282, 365, 370, 372 |
| FaqI | GGGAC | 1 cut(s) | 21 |
| FbaI | TGATCA | 1 cut(s) | 16 |
| FokI | GGATG | 1 cut(s) | 205 |
| FspBI | CTAG | 1 cut(s) | 306 |
| GlaI | GCGC | 1 cut(s) | 271 |
| HgaI | GACGC | 1 cut(s) | 368 |
| HhaI | GCGC | 1 cut(s) | 272 |
| Hin6I | GCGC | 1 cut(s) | 270 |
| HinP1I | GCGC | 1 cut(s) | 270 |
| HincII | GTYRAC | 1 cut(s) | 89 |
| HindII | GTYRAC | 1 cut(s) | 89 |
| HindIII | AAGCTT | 1 cut(s) | 105 |
| HinfI | GANTC | 2 cut(s) | 314, 324 |
| HphI | GGTGA | 1 cut(s) | 311 |
| Hpy166II | GTNNAC | 3 cut(s) | 89, 387, 402 |
| Hpy188I | TCNGA | 1 cut(s) | 27 |
| Hpy188III | TCNNGA | 2 cut(s) | 57, 234 |
| Hpy8I | GTNNAC | 3 cut(s) | 89, 387, 402 |
| HpyCH4III | ACNGT | 6 cut(s) | 12, 82, 229, 391, 399, 439 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 152 |
| HspAI | GCGC | 1 cut(s) | 270 |
| Ksp22I | TGATCA | 1 cut(s) | 16 |
| Kzo9I | GATC | 4 cut(s) | 16, 62, 163, 265 |
| LpnPI | CCDG | 1 cut(s) | 342 |
| LweI | GCATC | 1 cut(s) | 191 |
| MaeI | CTAG | 1 cut(s) | 306 |
| MaeIII | GTNAC | 1 cut(s) | 391 |
| MalI | GATC | 4 cut(s) | 18, 64, 165, 267 |
| MboI | GATC | 4 cut(s) | 16, 62, 163, 265 |
| MboII | GAAGA | 2 cut(s) | 72, 249 |
| MflI | RGATCY | 1 cut(s) | 163 |
| MluCI | AATT | 6 cut(s) | 28, 139, 150, 196, 201, 277 |
| MlyI | GAGTC | 1 cut(s) | 318 |
| MnlI | CCTC | 2 cut(s) | 339, 401 |
| MvnI | CGCG | 1 cut(s) | 270 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 152 |
| NdeII | GATC | 4 cut(s) | 16, 62, 163, 265 |
| PfeI | GAWTC | 1 cut(s) | 314 |
| PleI | GAGTC | 1 cut(s) | 318 |
| PpsI | GAGTC | 1 cut(s) | 318 |
| PsuI | RGATCY | 1 cut(s) | 163 |
| RsaI | GTAC | 1 cut(s) | 178 |
| RsaNI | GTAC | 1 cut(s) | 177 |
| Sau3AI | GATC | 4 cut(s) | 16, 62, 163, 265 |
| SchI | GAGTC | 1 cut(s) | 318 |
| SetI | ASST | 3 cut(s) | 109, 350, 358 |
| SfaNI | GCATC | 1 cut(s) | 191 |
| SgeI | CNNG | 9 cut(s) | 69, 172, 246, 256, 281, 318, 345, 369, 417 |
| Sse9I | AATT | 6 cut(s) | 28, 139, 150, 196, 201, 277 |
| SspMI | CTAG | 1 cut(s) | 306 |
| TaaI | ACNGT | 6 cut(s) | 12, 82, 229, 391, 399, 439 |
| TaqI | TCGA | 2 cut(s) | 65, 442 |
| TasI | AATT | 6 cut(s) | 28, 139, 150, 196, 201, 277 |
| TfiI | GAWTC | 1 cut(s) | 314 |
| TscAI | CASTG | 4 cut(s) | 17, 87, 394, 402 |
| TspDTI | ATGAA | 1 cut(s) | 327 |
| TspGWI | ACGGA | 1 cut(s) | 349 |
| TspRI | CASTG | 4 cut(s) | 17, 87, 394, 402 |
| XapI | RAATTY | 2 cut(s) | 28, 139 |
| XspI | CTAG | 1 cut(s) | 306 |