Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0001469

Physical Location & Seq

Genomic Coordinates Reverse (-)

47204307 .. 47205204

Gene Structure 898 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0320100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

ATGCACCGACTCCTGCCTCCGCACCCGATCCTCCAAGCCGCGATGCTGTTGCTCCCTTACCTTCATCCATTTCTGGCAGCCATCTCGCAACACCTCCACCACCGCTTTGATTCAGGTATCAGTCACCCCAATGAACCCAGAGCCAAGCTTGAGGTTGATCACTCTTGCAGGCATGCTTGCGACGCAGGGCATTGCATATATATAGGAGTGGTCTACTTGGTGATGATCACAGCATCGCCCAATCTAGAGGTTCACGAGCTGGATGAGCTCCCGGAGCAGTGGCGGAGGTTCAAGCTGGCTTGGCTTTGTAAGGAGCTGCAGTCGCATAATTCCGGGGCTTTGATTCGGATTCTCAATGCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

120

Amino Acids

13.73

Weight (kDa)

6.85

Isoelectric Point (pI)

57.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001469)

Species	Orthologous Gene IDs
malus_domestica	MD01G1068900.v1.1
rosa_chinensis	RchiOBHm_Chr1g0328881 RchiOBHm_Chr2g0103941 RchiOBHm_Chr2g0148771 RchiOBHm_Chr5g0081751 RchiOBHm_Chr6g0251601 RchiOBHm_Chr6g0252891 RchiOBHm_Chr6g0261041
rosa_laevigata	RLG00000009276
rosa_multiflora	Rmu_sc0002607.1_g000054
rosa_roxburghii	Rroxscaffold_3G00226620 Rroxscaffold_3G00261660 Rroxscaffold_6G00387930 Rroxscaffold_7G00214780
rosa_rugosa	Rorug01G0154400.1 Rorug02G0266600.1 Rorug03G0008400 Rorug03G0200100 Rorug05G0519500 Rorug06G0005400.1 Rorug06G0320100 Rorug07G0042900
rosa_samantha	Rh1AG156000 Rh1AG219000 Rh1BG044200 Rh1DG160300 Rh2BG398200 Rh2BG403900 Rh2BG460500 Rh2CG000900 Rh2CG307500 Rh2CG547200 Rh2DG469900 Rh4CG118200 Rh4DG178300 Rh5CG178000 Rh5CG304800 Rh5CG363400 Rh5DG164400 Rh6AG114000 Rh6AG247400 Rh6BG059200 Rh6BG107600 Rh6CG031400 Rh6CG104700 Rh6DG029900 Rh6DG095500 Rh7BG290500
rosa_wichuraiana	Rw1G002350 Rw4G023590 Rw5G005770 Rw6G009740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	213
AccII	CGCG	1 cut(s)	41
AciI	CCGC	4 cut(s)	20, 39, 103, 283
AclWI	GGATC	1 cut(s)	22
AgsI	TTSAA	1 cut(s)	292
AluBI	AGCT	5 cut(s)	148, 259, 268, 295, 316
AluI	AGCT	5 cut(s)	148, 259, 268, 295, 316
Alw21I	GWGCWC	1 cut(s)	270
AlwI	GGATC	1 cut(s)	22
ApeKI	GCWGC	2 cut(s)	77, 316
AsuC2I	CCSGG	2 cut(s)	272, 334
AsuHPI	GGTGA	2 cut(s)	116, 232
BanII	GRGCYC	1 cut(s)	270
BauI	CACGAG	1 cut(s)	254
Bbv12I	GWGCWC	1 cut(s)	270
BbvI	GCAGC	2 cut(s)	89, 303
BccI	CCATC	1 cut(s)	89
BcgI	CGANNNNNNTGC	4 cut(s)	31, 65, 66, 100
BclI	TGATCA	2 cut(s)	157, 225
BcnI	CCSGG	2 cut(s)	272, 334
BfaI	CTAG	2 cut(s)	245, 361
BfmI	CTRYAG	1 cut(s)	317
BisI	GCNGC	3 cut(s)	39, 78, 317
BlsI	GCNGC	3 cut(s)	40, 79, 318
Bme1390I	CCNGG	2 cut(s)	272, 334
BmrFI	CCNGG	2 cut(s)	272, 334
BmsI	GCATC	2 cut(s)	33, 242
BpuEI	CTTGAG	1 cut(s)	170
BpuMI	CCSGG	2 cut(s)	272, 334
BsaJI	CCNNGG	1 cut(s)	333
BsaXI	ACNNNNNCTCC	2 cut(s)	305, 335
Bse3DI	GCAATG	1 cut(s)	190
BseDI	CCNNGG	1 cut(s)	333
BseGI	GGATG	2 cut(s)	64, 268
BseMI	GCAATG	1 cut(s)	190
BseXI	GCAGC	2 cut(s)	89, 303
Bsh1236I	CGCG	1 cut(s)	41
BsiHKAI	GWGCWC	1 cut(s)	270
BsiSI	CCGG	2 cut(s)	272, 333
Bsp1286I	GDGCHC	1 cut(s)	270
Bsp143I	GATC	3 cut(s)	27, 157, 225
BspACI	CCGC	4 cut(s)	20, 39, 103, 283
BspFNI	CGCG	1 cut(s)	41
BspMAI	CTGCAG	1 cut(s)	321
BspPI	GGATC	1 cut(s)	22
BsrDI	GCAATG	1 cut(s)	190
BssECI	CCNNGG	1 cut(s)	333
BssMI	GATC	3 cut(s)	27, 157, 225
BssSI	CACGAG	1 cut(s)	254
Bst2BI	CACGAG	1 cut(s)	254
BstC8I	GCNNGC	4 cut(s)	170, 174, 178, 297
BstF5I	GGATG	2 cut(s)	64, 268
BstFNI	CGCG	1 cut(s)	41
BstKTI	GATC	3 cut(s)	30, 160, 228
BstMBI	GATC	3 cut(s)	27, 157, 225
BstMWI	GCNNNNNNNGC	5 cut(s)	182, 265, 274, 301, 322
BstNSI	RCATGY	1 cut(s)	176
BstSCI	CCNGG	2 cut(s)	270, 332
BstSFI	CTRYAG	1 cut(s)	317
BstUI	CGCG	1 cut(s)	41
BstV1I	GCAGC	2 cut(s)	89, 303
BtgZI	GCGATG	2 cut(s)	56, 219
BtsCI	GGATG	2 cut(s)	64, 268
BtsI	GCAGTG	1 cut(s)	284
BtsIMutI	CAGTG	1 cut(s)	284
Cac8I	GCNNGC	4 cut(s)	170, 174, 178, 297
CseI	GACGC	1 cut(s)	191
CviAII	CATG	1 cut(s)	173
DpnI	GATC	3 cut(s)	29, 159, 227
DpnII	GATC	3 cut(s)	27, 157, 225
EciI	GGCGGA	1 cut(s)	298
Ecl136II	GAGCTC	1 cut(s)	268
Eco24I	GRGCYC	1 cut(s)	270
Eco53kI	GAGCTC	1 cut(s)	268
EcoICRI	GAGCTC	1 cut(s)	268
EcoT38I	GRGCYC	1 cut(s)	270
FaeI	CATG	1 cut(s)	176
FaiI	YATR	6 cut(s)	174, 197, 199, 201, 203, 327
FatI	CATG	1 cut(s)	172
FbaI	TGATCA	2 cut(s)	157, 225
FblI	GTMKAC	1 cut(s)	213
Fnu4HI	GCNGC	3 cut(s)	39, 78, 317
FokI	GGATG	2 cut(s)	51, 275
FriOI	GRGCYC	1 cut(s)	270
Fsp4HI	GCNGC	3 cut(s)	39, 78, 317
FspBI	CTAG	2 cut(s)	245, 361
GluI	GCNGC	3 cut(s)	39, 78, 317
HapII	CCGG	2 cut(s)	272, 333
HgaI	GACGC	1 cut(s)	191
Hin1II	CATG	1 cut(s)	176
HindIII	AAGCTT	1 cut(s)	146
HinfI	GANTC	4 cut(s)	9, 110, 343, 349
HpaII	CCGG	2 cut(s)	272, 333
HphI	GGTGA	2 cut(s)	116, 232
Hpy166II	GTNNAC	2 cut(s)	214, 253
Hpy188I	TCNGA	1 cut(s)	348
Hpy188III	TCNNGA	2 cut(s)	245, 254
Hpy8I	GTNNAC	2 cut(s)	214, 253
Hpy99I	CGWCG	1 cut(s)	185
HpyAV	CCTTC	1 cut(s)	71
HpyCH4V	TGCA	4 cut(s)	4, 168, 195, 319
HpyF10VI	GCNNNNNNNGC	5 cut(s)	182, 265, 274, 301, 322
Hsp92II	CATG	1 cut(s)	176
Ksp22I	TGATCA	2 cut(s)	157, 225
Kzo9I	GATC	3 cut(s)	27, 157, 225
LmnI	GCTCC	4 cut(s)	57, 273, 274, 313
Lsp1109I	GCAGC	2 cut(s)	89, 303
LweI	GCATC	2 cut(s)	33, 242
MaeI	CTAG	2 cut(s)	245, 361
MaeIII	GTNAC	1 cut(s)	122
MalI	GATC	3 cut(s)	29, 159, 227
MboI	GATC	3 cut(s)	27, 157, 225
MhlI	GDGCHC	1 cut(s)	270
MluCI	AATT	1 cut(s)	328
MlyI	GAGTC	1 cut(s)	3
MnlI	CCTC	6 cut(s)	27, 41, 104, 145, 241, 279
MslI	CAYNNNNRTG	1 cut(s)	129
MspI	CCGG	2 cut(s)	272, 333
MspR9I	CCNGG	2 cut(s)	272, 334
MvnI	CGCG	1 cut(s)	41
MwoI	GCNNNNNNNGC	5 cut(s)	182, 265, 274, 301, 322
NciI	CCSGG	2 cut(s)	272, 334
NdeII	GATC	3 cut(s)	27, 157, 225
NlaIII	CATG	1 cut(s)	176
NmuCI	GTSAC	1 cut(s)	122
NspI	RCATGY	1 cut(s)	176
PaeI	GCATGC	1 cut(s)	176
PfeI	GAWTC	3 cut(s)	110, 343, 349
PfoI	TCCNGGA	1 cut(s)	270
PkrI	GCNGC	3 cut(s)	40, 79, 318
PleI	GAGTC	1 cut(s)	3
PpsI	GAGTC	1 cut(s)	3
Psp124BI	GAGCTC	1 cut(s)	270
PstI	CTGCAG	1 cut(s)	321
RseI	CAYNNNNRTG	1 cut(s)	129
SacI	GAGCTC	1 cut(s)	270
SatI	GCNGC	3 cut(s)	39, 78, 317
Sau3AI	GATC	3 cut(s)	27, 157, 225
SchI	GAGTC	1 cut(s)	3
ScrFI	CCNGG	2 cut(s)	272, 334
SduI	GDGCHC	1 cut(s)	270
SfaNI	GCATC	2 cut(s)	33, 242
SfcI	CTRYAG	1 cut(s)	317
SmiMI	CAYNNNNRTG	1 cut(s)	129
SmlI	CTYRAG	1 cut(s)	149
SmoI	CTYRAG	1 cut(s)	149
SphI	GCATGC	1 cut(s)	176
Sse9I	AATT	1 cut(s)	328
SsiI	CCGC	4 cut(s)	20, 39, 103, 283
SspMI	CTAG	2 cut(s)	245, 361
SstI	GAGCTC	1 cut(s)	270
StyD4I	CCNGG	2 cut(s)	270, 332
TasI	AATT	1 cut(s)	328
TauI	GCSGC	1 cut(s)	41
TfiI	GAWTC	3 cut(s)	110, 343, 349
TscAI	CASTG	1 cut(s)	284
TseFI	GTSAC	1 cut(s)	122
TseI	GCWGC	2 cut(s)	77, 316
Tsp45I	GTSAC	1 cut(s)	122
TspDTI	ATGAA	2 cut(s)	53, 147
TspRI	CASTG	1 cut(s)	284
XbaI	TCTAGA	1 cut(s)	244
XceI	RCATGY	1 cut(s)	176
XmiI	GTMKAC	1 cut(s)	213
XspI	CTAG	2 cut(s)	245, 361

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.