Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0001469

Physical Location & Seq

Genomic Coordinates Reverse (-)

5864463 .. 5880937

Gene Structure 16475 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG044200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 783 bp

ATGTTGGGACGGTGTAATTACAATCAGCATTCTGCTTCAGCAACAACTCATAAGTCAAGAAAATCGAAGAGATGGAGAACAGTGTGTGAACAACAAACGGCTGAGGCTTCGCATAGTTTCTGTGGAAATGACGAACAAAATTCTGCTGTAATGGCGAACGAGGATCTATTAGTTGGTACAGCATCACATATTGATAATTCAATTATGGGAGATATGCCATCCAATACTATATCAAGAAGAACCAGGAGAATGTTGAGACAATGTGATCGCACTGAAAATTGTGCTCCAACAAATGTGTTCTTTACTAGCGATGAATCTCACCAAGTCATATCACGGAAGTCAAAGAGGTGGAAAGCTGCATCAGCTACTGAAGCATTAGATACTTTCTCTGGAAATCATGAACAAAACGTTGCTGCACCTATAAATGAGAATTTATTAGTTGGGACAGCATCACATATCGATTATTCAATCACAGAAGAACAACCTGCTCCAGCAAATACAAGCAATACCTGCATTTTCATCAATCCAACAATTCCAGAGGCGATGAGATACAGAATTCAGTTTTCAAAGTTGGTTGACAGAGTGCAGGTACGTCCTATTCCATCGAAACAACCAACATCAGAGGAAATTGAAGAAAATGATGTGAGAACAGTCTCTCAATTGAACACACTGGATCCATCATCATACAAGGACCCTATGGAAAGACATGAACTTGTTTTCAACGTCCTCCCACTCTCTTTGCCGGTTGGCCTATGGAGCCTTGGCCATTATGAGCTGAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

260

Amino Acids

29.22

Weight (kDa)

6.14

Isoelectric Point (pI)

53.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001469)

Species	Orthologous Gene IDs
malus_domestica	MD01G1068900.v1.1
rosa_chinensis	RchiOBHm_Chr1g0328881 RchiOBHm_Chr2g0103941 RchiOBHm_Chr2g0148771 RchiOBHm_Chr5g0081751 RchiOBHm_Chr6g0251601 RchiOBHm_Chr6g0252891 RchiOBHm_Chr6g0261041
rosa_laevigata	RLG00000009276
rosa_multiflora	Rmu_sc0002607.1_g000054
rosa_roxburghii	Rroxscaffold_3G00226620 Rroxscaffold_3G00261660 Rroxscaffold_6G00387930 Rroxscaffold_7G00214780
rosa_rugosa	Rorug01G0154400.1 Rorug02G0266600.1 Rorug03G0008400 Rorug03G0200100 Rorug05G0519500 Rorug06G0005400.1 Rorug06G0320100 Rorug07G0042900
rosa_samantha	Rh1AG156000 Rh1AG219000 Rh1BG044200 Rh1DG160300 Rh2BG398200 Rh2BG403900 Rh2BG460500 Rh2CG000900 Rh2CG307500 Rh2CG547200 Rh2DG469900 Rh4CG118200 Rh4DG178300 Rh5CG178000 Rh5CG304800 Rh5CG363400 Rh5DG164400 Rh6AG114000 Rh6AG247400 Rh6BG059200 Rh6BG107600 Rh6CG031400 Rh6CG104700 Rh6DG029900 Rh6DG095500 Rh7BG290500
rosa_wichuraiana	Rw1G002350 Rw4G023590 Rw5G005770 Rw6G009740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	3 cut(s)	493, 518, 577
AclI	AACGTT	1 cut(s)	408
AclWI	GGATC	3 cut(s)	171, 668, 681
AcoI	YGGCCR	1 cut(s)	763
AcsI	RAATTY	3 cut(s)	139, 430, 555
AcuI	CTGAAG	2 cut(s)	21, 390
AfaI	GTAC	2 cut(s)	178, 591
AgsI	TTSAA	6 cut(s)	201, 468, 567, 632, 664, 721
AjnI	CCWGG	1 cut(s)	242
AluBI	AGCT	3 cut(s)	356, 365, 775
AluI	AGCT	3 cut(s)	356, 365, 775
Alw21I	GWGCWC	1 cut(s)	286
Alw26I	GTCTC	2 cut(s)	250, 658
AlwI	GGATC	3 cut(s)	171, 668, 681
AlwNI	CAGNNNCTG	1 cut(s)	368
AoxI	GGCC	2 cut(s)	748, 763
ApeKI	GCWGC	2 cut(s)	356, 413
ApoI	RAATTY	3 cut(s)	139, 430, 555
AspS9I	GGNCC	1 cut(s)	691
AsuHPI	GGTGA	1 cut(s)	311
AvaII	GGWCC	1 cut(s)	691
BalI	TGGCCA	1 cut(s)	765
BamHI	GGATCC	1 cut(s)	673
Bbv12I	GWGCWC	1 cut(s)	286
BbvCI	CCTCAGC	1 cut(s)	102
BbvI	GCAGC	2 cut(s)	343, 400
BccI	CCATC	4 cut(s)	66, 226, 610, 685
BceAI	ACGGC	1 cut(s)	114
BciT130I	CCWGG	1 cut(s)	244
BcoDI	GTCTC	2 cut(s)	250, 658
BfaI	CTAG	1 cut(s)	306
BfuAI	ACCTGC	3 cut(s)	493, 518, 577
BisI	GCNGC	2 cut(s)	357, 414
BlsI	GCNGC	2 cut(s)	358, 415
Bme1390I	CCNGG	1 cut(s)	244
Bme18I	GGWCC	1 cut(s)	691
BmgT120I	GGNCC	1 cut(s)	691
BmiI	GGNNCC	3 cut(s)	675, 693, 758
BmrFI	CCNGG	1 cut(s)	244
BmsI	GCATC	3 cut(s)	191, 368, 458
BpmI	CTGGAG	1 cut(s)	474
Bpu10I	CCTNAGC	1 cut(s)	102
Bsa29I	ATCGAT	1 cut(s)	459
BsaJI	CCNNGG	1 cut(s)	760
Bse118I	RCCGGY	1 cut(s)	742
Bse1I	ACTGG	1 cut(s)	675
BseBI	CCWGG	1 cut(s)	244
BseCI	ATCGAT	1 cut(s)	459
BseDI	CCNNGG	1 cut(s)	760
BseGI	GGATG	1 cut(s)	218
BseMII	CTCAG	2 cut(s)	93, 767
BseNI	ACTGG	1 cut(s)	675
BseXI	GCAGC	2 cut(s)	343, 400
BsgI	GTGCAG	2 cut(s)	399, 605
BshFI	GGCC	2 cut(s)	750, 765
BshVI	ATCGAT	1 cut(s)	459
BsiHKAI	GWGCWC	1 cut(s)	286
BsiSI	CCGG	1 cut(s)	743
BslFI	GGGAC	2 cut(s)	21, 457
BsmAI	GTCTC	2 cut(s)	250, 658
BsmFI	GGGAC	2 cut(s)	21, 457
BsmI	GAATGC	1 cut(s)	28
BsnI	GGCC	2 cut(s)	750, 765
Bsp1286I	GDGCHC	1 cut(s)	286
Bsp143I	GATC	3 cut(s)	163, 265, 673
BspANI	GGCC	2 cut(s)	750, 765
BspCNI	CTCAG	2 cut(s)	94, 768
BspDI	ATCGAT	1 cut(s)	459
BspHI	TCATGA	1 cut(s)	397
BspLI	GGNNCC	3 cut(s)	675, 693, 758
BspMI	ACCTGC	3 cut(s)	493, 518, 577
BspPI	GGATC	3 cut(s)	171, 668, 681
BsrFI	RCCGGY	1 cut(s)	742
BsrI	ACTGG	1 cut(s)	675
BssAI	RCCGGY	1 cut(s)	742
BssECI	CCNNGG	1 cut(s)	760
BssMI	GATC	3 cut(s)	163, 265, 673
BssT1I	CCWWGG	1 cut(s)	760
Bst2UI	CCWGG	1 cut(s)	244
Bst4CI	ACNGT	3 cut(s)	12, 82, 652
Bst6I	CTCTTC	1 cut(s)	62
BstAPI	GCANNNNNTGC	1 cut(s)	510
BstDEI	CTNAG	2 cut(s)	102, 776
BstF5I	GGATG	1 cut(s)	218
BstKTI	GATC	3 cut(s)	166, 268, 676
BstMAI	GTCTC	2 cut(s)	250, 658
BstMBI	GATC	3 cut(s)	163, 265, 673
BstMWI	GCNNNNNNNGC	5 cut(s)	152, 362, 371, 510, 756
BstNI	CCWGG	1 cut(s)	244
BstSCI	CCNGG	1 cut(s)	242
BstV1I	GCAGC	2 cut(s)	343, 400
BstX2I	RGATCY	2 cut(s)	163, 673
BstYI	RGATCY	2 cut(s)	163, 673
Bsu15I	ATCGAT	1 cut(s)	459
BsuRI	GGCC	2 cut(s)	750, 765
BsuTUI	ATCGAT	1 cut(s)	459
BtgZI	GCGATG	2 cut(s)	324, 557
BtsCI	GGATG	1 cut(s)	218
BtsIMutI	CAGTG	3 cut(s)	87, 270, 668
BveI	ACCTGC	3 cut(s)	493, 518, 577
CaiI	CAGNNNCTG	1 cut(s)	368
CciI	TCATGA	1 cut(s)	397
Cfr10I	RCCGGY	1 cut(s)	742
Cfr13I	GGNCC	1 cut(s)	691
ClaI	ATCGAT	1 cut(s)	459
Csp6I	GTAC	2 cut(s)	177, 590
CspCI	CAANNNNNGTGG	2 cut(s)	720, 755
CviAII	CATG	2 cut(s)	398, 707
CviJI	RGCY	8 cut(s)	101, 107, 356, 365, 750, 759, 765, 775
CviKI_1	RGCY	8 cut(s)	101, 107, 356, 365, 750, 759, 765, 775
CviQI	GTAC	2 cut(s)	177, 590
DdeI	CTNAG	2 cut(s)	102, 776
DpnI	GATC	3 cut(s)	165, 267, 675
DpnII	GATC	3 cut(s)	163, 265, 673
EaeI	YGGCCR	1 cut(s)	763
Eam1104I	CTCTTC	1 cut(s)	62
EarI	CTCTTC	1 cut(s)	62
Eco130I	CCWWGG	1 cut(s)	760
Eco47I	GGWCC	1 cut(s)	691
Eco57I	CTGAAG	2 cut(s)	21, 390
EcoO109I	RGGNCCY	1 cut(s)	691
EcoRI	GAATTC	1 cut(s)	555
EcoRII	CCWGG	1 cut(s)	242
EcoT14I	CCWWGG	1 cut(s)	760
ErhI	CCWWGG	1 cut(s)	760
FaeI	CATG	2 cut(s)	401, 710
FaqI	GGGAC	2 cut(s)	21, 457
FatI	CATG	2 cut(s)	397, 706
Fnu4HI	GCNGC	2 cut(s)	357, 414
FokI	GGATG	1 cut(s)	205
Fsp4HI	GCNGC	2 cut(s)	357, 414
FspBI	CTAG	1 cut(s)	306
GluI	GCNGC	2 cut(s)	357, 414
GsuI	CTGGAG	1 cut(s)	474
HaeIII	GGCC	2 cut(s)	750, 765
HapII	CCGG	1 cut(s)	743
Hin1II	CATG	2 cut(s)	401, 710
HincII	GTYRAC	1 cut(s)	577
HindII	GTYRAC	1 cut(s)	577
HinfI	GANTC	1 cut(s)	314
HpaII	CCGG	1 cut(s)	743
HphI	GGTGA	1 cut(s)	311
Hpy166II	GTNNAC	2 cut(s)	89, 577
Hpy188I	TCNGA	1 cut(s)	622
Hpy188III	TCNNGA	5 cut(s)	57, 234, 390, 398, 536
Hpy8I	GTNNAC	2 cut(s)	89, 577
HpyCH4III	ACNGT	3 cut(s)	12, 82, 652
HpyCH4IV	ACGT	3 cut(s)	408, 592, 723
HpyCH4V	TGCA	4 cut(s)	359, 416, 513, 586
HpyF10VI	GCNNNNNNNGC	5 cut(s)	152, 362, 371, 510, 756
HpyF3I	CTNAG	2 cut(s)	102, 776
HpySE526I	ACGT	3 cut(s)	408, 592, 723
Hsp92II	CATG	2 cut(s)	401, 710
Kzo9I	GATC	3 cut(s)	163, 265, 673
LmnI	GCTCC	3 cut(s)	289, 493, 756
Lsp1109I	GCAGC	2 cut(s)	343, 400
LweI	GCATC	3 cut(s)	191, 368, 458
MaeI	CTAG	1 cut(s)	306
MaeII	ACGT	3 cut(s)	408, 592, 723
MalI	GATC	3 cut(s)	165, 267, 675
MboI	GATC	3 cut(s)	163, 265, 673
MboII	GAAGA	4 cut(s)	79, 249, 488, 644
MfeI	CAATTG	1 cut(s)	659
MflI	RGATCY	2 cut(s)	163, 673
MhlI	GDGCHC	1 cut(s)	286
MlsI	TGGCCA	1 cut(s)	765
MluNI	TGGCCA	1 cut(s)	765
MmeI	TCCRAC	2 cut(s)	311, 551
MnlI	CCTC	6 cut(s)	97, 154, 339, 532, 616, 737
Mox20I	TGGCCA	1 cut(s)	765
MscI	TGGCCA	1 cut(s)	765
Msp20I	TGGCCA	1 cut(s)	765
MspI	CCGG	1 cut(s)	743
MspR9I	CCNGG	1 cut(s)	244
MunI	CAATTG	1 cut(s)	659
Mva1269I	GAATGC	1 cut(s)	28
MvaI	CCWGG	1 cut(s)	244
MwoI	GCNNNNNNNGC	5 cut(s)	152, 362, 371, 510, 756
NdeII	GATC	3 cut(s)	163, 265, 673
NlaIII	CATG	2 cut(s)	401, 710
NlaIV	GGNNCC	3 cut(s)	675, 693, 758
PagI	TCATGA	1 cut(s)	397
PctI	GAATGC	1 cut(s)	28
PfeI	GAWTC	1 cut(s)	314
PkrI	GCNGC	2 cut(s)	358, 415
PpuMI	RGGWCCY	1 cut(s)	691
Psp1406I	AACGTT	1 cut(s)	408
Psp5II	RGGWCCY	1 cut(s)	691
Psp6I	CCWGG	1 cut(s)	242
PspGI	CCWGG	1 cut(s)	242
PspN4I	GGNNCC	3 cut(s)	675, 693, 758
PspPI	GGNCC	1 cut(s)	691
PspPPI	RGGWCCY	1 cut(s)	691
PstNI	CAGNNNCTG	1 cut(s)	368
PsuI	RGATCY	2 cut(s)	163, 673
RsaI	GTAC	2 cut(s)	178, 591
RsaNI	GTAC	2 cut(s)	177, 590
SatI	GCNGC	2 cut(s)	357, 414
Sau3AI	GATC	3 cut(s)	163, 265, 673
Sau96I	GGNCC	1 cut(s)	691
ScrFI	CCNGG	1 cut(s)	244
SduI	GDGCHC	1 cut(s)	286
SfaNI	GCATC	3 cut(s)	191, 368, 458
SinI	GGWCC	1 cut(s)	691
SspMI	CTAG	1 cut(s)	306
StyD4I	CCNGG	1 cut(s)	242
StyI	CCWWGG	1 cut(s)	760
TaaI	ACNGT	3 cut(s)	12, 82, 652
TaiI	ACGT	3 cut(s)	411, 595, 726
TaqI	TCGA	3 cut(s)	65, 459, 605
TfiI	GAWTC	1 cut(s)	314
TscAI	CASTG	3 cut(s)	87, 277, 675
TseI	GCWGC	2 cut(s)	356, 413
TspDTI	ATGAA	4 cut(s)	327, 414, 508, 723
TspGWI	ACGGA	1 cut(s)	349
TspRI	CASTG	3 cut(s)	87, 277, 675
VpaK11BI	GGWCC	1 cut(s)	691
XapI	RAATTY	3 cut(s)	139, 430, 555
XspI	CTAG	1 cut(s)	306

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.