Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001469

Physical Location & Seq

Genomic Coordinates Forward (+)

66533515 .. 66540402

Gene Structure 6888 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ51829

Sequence Viewer

CDS Protein Promoter (2k)

Length: 237 bp

ATGTCATCAGGAATAAGCTTCAAGCTAAGTGGTGAGGTGCCTCACTTAAAGGAGGTCGGAGTTCGTGGAGTCATCACACTTAATGAGCCATATGAGACTGATTCCAACATCTCTTTATCAGTCTGCAATGGTACCCTGAAGGAAAACAGGAGAGAAAGAGCCCACAGCACAGAAAGCTTTGTCTTGGTGAGCTTAACAAACCACCACTTCCAGTTTGTGCTATCTCTACAGCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004439 GO:0004721 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0008138 GO:0008150 GO:0008152 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019538 GO:0034593 GO:0034595 GO:0036211 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0052866 GO:0071704 GO:0106019 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DSPc

Protein Analysis

78

Amino Acids

8.69

Weight (kDa)

6.39

Isoelectric Point (pI)

28.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001469)

Species	Orthologous Gene IDs
malus_domestica	MD01G1068900.v1.1
rosa_chinensis	RchiOBHm_Chr1g0328881 RchiOBHm_Chr2g0103941 RchiOBHm_Chr2g0148771 RchiOBHm_Chr5g0081751 RchiOBHm_Chr6g0251601 RchiOBHm_Chr6g0252891 RchiOBHm_Chr6g0261041
rosa_laevigata	RLG00000009276
rosa_multiflora	Rmu_sc0002607.1_g000054
rosa_roxburghii	Rroxscaffold_3G00226620 Rroxscaffold_3G00261660 Rroxscaffold_6G00387930 Rroxscaffold_7G00214780
rosa_rugosa	Rorug01G0154400.1 Rorug02G0266600.1 Rorug03G0008400 Rorug03G0200100 Rorug05G0519500 Rorug06G0005400.1 Rorug06G0320100 Rorug07G0042900
rosa_samantha	Rh1AG156000 Rh1AG219000 Rh1BG044200 Rh1DG160300 Rh2BG398200 Rh2BG403900 Rh2BG460500 Rh2CG000900 Rh2CG307500 Rh2CG547200 Rh2DG469900 Rh4CG118200 Rh4DG178300 Rh5CG178000 Rh5CG304800 Rh5CG363400 Rh5DG164400 Rh6AG114000 Rh6AG247400 Rh6BG059200 Rh6BG107600 Rh6CG031400 Rh6CG104700 Rh6DG029900 Rh6DG095500 Rh7BG290500
rosa_wichuraiana	Rw1G002350 Rw4G023590 Rw5G005770 Rw6G009740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	131
AccB1I	GGYRCC	2 cut(s)	37, 131
AcuI	CTGAAG	1 cut(s)	158
AfaI	GTAC	1 cut(s)	133
AgsI	TTSAA	1 cut(s)	22
AluBI	AGCT	5 cut(s)	18, 25, 177, 192, 232
AluI	AGCT	5 cut(s)	18, 25, 177, 192, 232
Alw26I	GTCTC	1 cut(s)	89
Asp718I	GGTACC	1 cut(s)	131
AsuHPI	GGTGA	2 cut(s)	44, 199
BanI	GGYRCC	2 cut(s)	37, 131
BanII	GRGCYC	1 cut(s)	163
BcoDI	GTCTC	1 cut(s)	89
BfmI	CTRYAG	1 cut(s)	227
BmiI	GGNNCC	2 cut(s)	39, 133
Bse1I	ACTGG	1 cut(s)	211
Bse3DI	GCAATG	1 cut(s)	133
BseMI	GCAATG	1 cut(s)	133
BseNI	ACTGG	1 cut(s)	211
BshNI	GGYRCC	2 cut(s)	37, 131
BsmAI	GTCTC	1 cut(s)	89
Bsp1286I	GDGCHC	1 cut(s)	163
BspLI	GGNNCC	2 cut(s)	39, 133
BspT107I	GGYRCC	2 cut(s)	37, 131
BsrDI	GCAATG	1 cut(s)	133
BsrI	ACTGG	1 cut(s)	211
BstDEI	CTNAG	1 cut(s)	26
BstMAI	GTCTC	1 cut(s)	89
BstMWI	GCNNNNNNNGC	1 cut(s)	174
BstSFI	CTRYAG	1 cut(s)	227
Csp6I	GTAC	1 cut(s)	132
CspCI	CAANNNNNGTGG	2 cut(s)	10, 45
CviJI	RGCY	7 cut(s)	18, 25, 88, 161, 177, 192, 232
CviKI_1	RGCY	7 cut(s)	18, 25, 88, 161, 177, 192, 232
CviQI	GTAC	1 cut(s)	132
DdeI	CTNAG	1 cut(s)	26
Eco24I	GRGCYC	1 cut(s)	163
Eco57I	CTGAAG	1 cut(s)	158
EcoT38I	GRGCYC	1 cut(s)	163
FaiI	YATR	2 cut(s)	91, 93
FauNDI	CATATG	1 cut(s)	91
FriOI	GRGCYC	1 cut(s)	163
HindIII	AAGCTT	2 cut(s)	16, 175
HinfI	GANTC	2 cut(s)	69, 101
HphI	GGTGA	2 cut(s)	44, 199
Hpy188I	TCNGA	1 cut(s)	59
Hpy188III	TCNNGA	1 cut(s)	9
HpyAV	CCTTC	1 cut(s)	133
HpyCH4V	TGCA	1 cut(s)	126
HpyF10VI	GCNNNNNNNGC	1 cut(s)	174
HpyF3I	CTNAG	1 cut(s)	26
KpnI	GGTACC	1 cut(s)	135
LpnPI	CCDG	3 cut(s)	133, 149, 224
MhlI	GDGCHC	1 cut(s)	163
MlyI	GAGTC	1 cut(s)	78
MmeI	TCCRAC	2 cut(s)	37, 129
MnlI	CCTC	3 cut(s)	28, 46, 51
MseI	TTAA	4 cut(s)	47, 81, 194, 235
MwoI	GCNNNNNNNGC	1 cut(s)	174
NdeI	CATATG	1 cut(s)	91
NlaIV	GGNNCC	2 cut(s)	39, 133
PfeI	GAWTC	1 cut(s)	101
PleI	GAGTC	1 cut(s)	77
PpsI	GAGTC	1 cut(s)	77
PspN4I	GGNNCC	2 cut(s)	39, 133
RsaI	GTAC	1 cut(s)	133
RsaNI	GTAC	1 cut(s)	132
SaqAI	TTAA	4 cut(s)	47, 81, 194, 235
SchI	GAGTC	1 cut(s)	78
SduI	GDGCHC	1 cut(s)	163
SetI	ASST	7 cut(s)	20, 27, 39, 57, 179, 194, 234
SfcI	CTRYAG	1 cut(s)	227
SgeI	CNNG	7 cut(s)	21, 34, 77, 148, 160, 196, 223
TfiI	GAWTC	1 cut(s)	101
Tru1I	TTAA	4 cut(s)	47, 81, 194, 235
Tru9I	TTAA	4 cut(s)	47, 81, 194, 235

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.