Rw6G009740

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0001469
Physical Location & Seq
Reverse (-)
16342376 .. 16354546
12171 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G009740.1

Sequence Viewer

Length: 567 bp
ATGGACGGAGATGGTATGACTTTTGGGGGGTCATGGCTGACTGCTCCTGGAGGTGATTGGAAGCCAGATGATGGTGGCGGAGGCTGGTGGGATTCGTCTGTTAATTGGAACTTGGAAGAAGTTAATATCAGAAAACAGGTCAAATGGCCCGAAAAAAAAAAGGGGAGAACTTCTGAAACCTTAAGGTCAAAATTAACAAAAGACTTGACAATTGTGAAATTAGAGCTACATAAATATGTCTTTAACCAACTGTTTCGCTTTAACCAGCAGGTAGCGGAAAATATAGTTCCCTCTTGTGGAAACACACACTGTTCCAATATGCATACAACTTTGCTAGCTCATCAGTTGATATTTTGCATTTGCATATTCATTGGCAGTCTTTTTCTAAGCTACAAAGGTTTAAATAACAAGAAGATGGGATATCAGAAGAAAGGTCTTCCAAAAGGTGAAGCAGCACCTTGCCTGCACAAGCTTGACTTTACAAAGGTATTGAGTATAGTTTCCTCCGGTGGAACCATAGCCAGCTCATCAGTTGAAATTTTGCATTTGCATTTTCATTGGCAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

188

Amino Acids

21.09

Weight (kDa)

9.08

Isoelectric Point (pI)

41.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 259
AccB7I CCANNNNNTGG 1 cut(s) 71
AciI CCGC 2 cut(s) 78, 275
AcsI RAATTY 1 cut(s) 537
AfiI CCNNNNNNNGG 2 cut(s) 71, 296
AflII CTTAAG 1 cut(s) 181
AgsI TTSAA 1 cut(s) 536
AjnI CCWGG 1 cut(s) 46
AluBI AGCT 5 cut(s) 226, 338, 390, 472, 525
AluI AGCT 5 cut(s) 226, 338, 390, 472, 525
AoxI GGCC 1 cut(s) 146
ApeKI GCWGC 1 cut(s) 452
ApoI RAATTY 1 cut(s) 537
AspS9I GGNCC 1 cut(s) 147
AsuHPI GGTGA 2 cut(s) 65, 458
AsuNHI GCTAGC 1 cut(s) 334
BbsI GAAGAC 1 cut(s) 428
BbvI GCAGC 1 cut(s) 464
BccI CCATC 3 cut(s) 5, 65, 409
BciT130I CCWGG 1 cut(s) 48
BfaI CTAG 1 cut(s) 335
BfrI CTTAAG 1 cut(s) 181
BfuAI ACCTGC 1 cut(s) 259
BisI GCNGC 1 cut(s) 453
BlsI GCNGC 1 cut(s) 454
Bme1390I CCNGG 1 cut(s) 48
BmgT120I GGNCC 1 cut(s) 147
BmiI GGNNCC 1 cut(s) 514
BmrFI CCNGG 1 cut(s) 48
BmtI GCTAGC 1 cut(s) 338
BpiI GAAGAC 1 cut(s) 428
BpmI CTGGAG 1 cut(s) 69
BsaWI WCCGGW 1 cut(s) 506
Bsc4I CCNNNNNNNGG 2 cut(s) 71, 296
BseBI CCWGG 1 cut(s) 48
BseLI CCNNNNNNNGG 2 cut(s) 71, 296
BseXI GCAGC 1 cut(s) 464
BsgI GTGCAG 1 cut(s) 449
BshFI GGCC 1 cut(s) 148
BsiSI CCGG 1 cut(s) 507
BslI CCNNNNNNNGG 2 cut(s) 71, 296
BsnI GGCC 1 cut(s) 148
BspACI CCGC 2 cut(s) 78, 275
BspANI GGCC 1 cut(s) 148
BspLI GGNNCC 1 cut(s) 514
BspMI ACCTGC 1 cut(s) 259
BspOI GCTAGC 1 cut(s) 338
BspTI CTTAAG 1 cut(s) 181
Bst2UI CCWGG 1 cut(s) 48
Bst4CI ACNGT 2 cut(s) 252, 311
BstAFI CTTAAG 1 cut(s) 181
BstC8I GCNNGC 3 cut(s) 336, 464, 523
BstDEI CTNAG 1 cut(s) 386
BstNI CCWGG 1 cut(s) 48
BstSCI CCNGG 1 cut(s) 46
BstV1I GCAGC 1 cut(s) 464
BstV2I GAAGAC 1 cut(s) 428
BsuRI GGCC 1 cut(s) 148
BtsIMutI CAGTG 1 cut(s) 307
BveI ACCTGC 1 cut(s) 259
Cac8I GCNNGC 3 cut(s) 336, 464, 523
Cfr13I GGNCC 1 cut(s) 147
CviAII CATG 1 cut(s) 33
DdeI CTNAG 1 cut(s) 386
DraI TTTAAA 1 cut(s) 402
EciI GGCGGA 1 cut(s) 93
Eco32I GATATC 1 cut(s) 422
EcoRII CCWGG 1 cut(s) 46
EcoRV GATATC 1 cut(s) 422
EcoT22I ATGCAT 1 cut(s) 324
FaeI CATG 1 cut(s) 36
FalI AAGNNNNNCTT 2 cut(s) 461, 493
FatI CATG 1 cut(s) 32
Fnu4HI GCNGC 1 cut(s) 453
Fsp4HI GCNGC 1 cut(s) 453
FspBI CTAG 1 cut(s) 335
GluI GCNGC 1 cut(s) 453
GsuI CTGGAG 1 cut(s) 69
HaeIII GGCC 1 cut(s) 148
HapII CCGG 1 cut(s) 507
Hin1II CATG 1 cut(s) 36
HindIII AAGCTT 1 cut(s) 470
HinfI GANTC 1 cut(s) 92
HpaII CCGG 1 cut(s) 507
HphI GGTGA 2 cut(s) 65, 458
Hpy188I TCNGA 3 cut(s) 131, 175, 426
HpyCH4III ACNGT 2 cut(s) 252, 311
HpyCH4V TGCA 6 cut(s) 322, 357, 363, 466, 544, 550
HpyF3I CTNAG 1 cut(s) 386
Hsp92II CATG 1 cut(s) 36
LmnI GCTCC 1 cut(s) 49
Lsp1109I GCAGC 1 cut(s) 464
MaeI CTAG 1 cut(s) 335
MboII GAAGA 4 cut(s) 128, 424, 428, 439
MfeI CAATTG 1 cut(s) 210
MluCI AATT 5 cut(s) 103, 191, 210, 218, 537
MnlI CCTC 4 cut(s) 44, 74, 301, 514
Mph1103I ATGCAT 1 cut(s) 324
MseI TTAA 7 cut(s) 102, 123, 182, 194, 243, 261, 401
MslI CAYNNNNRTG 1 cut(s) 234
MspCI CTTAAG 1 cut(s) 181
MspI CCGG 1 cut(s) 507
MspR9I CCNGG 1 cut(s) 48
MunI CAATTG 1 cut(s) 210
MvaI CCWGG 1 cut(s) 48
NheI GCTAGC 1 cut(s) 334
NlaIII CATG 1 cut(s) 36
NlaIV GGNNCC 1 cut(s) 514
NsiI ATGCAT 1 cut(s) 324
PfeI GAWTC 1 cut(s) 92
PflMI CCANNNNNTGG 1 cut(s) 71
PfoI TCCNGGA 1 cut(s) 46
PkrI GCNGC 1 cut(s) 454
Psp6I CCWGG 1 cut(s) 46
PspGI CCWGG 1 cut(s) 46
PspN4I GGNNCC 1 cut(s) 514
PspPI GGNCC 1 cut(s) 147
RseI CAYNNNNRTG 1 cut(s) 234
SaqAI TTAA 7 cut(s) 102, 123, 182, 194, 243, 261, 401
SatI GCNGC 1 cut(s) 453
Sau96I GGNCC 1 cut(s) 147
ScrFI CCNGG 1 cut(s) 48
SmiMI CAYNNNNRTG 1 cut(s) 234
SmlI CTYRAG 1 cut(s) 181
SmoI CTYRAG 1 cut(s) 181
Sse9I AATT 5 cut(s) 103, 191, 210, 218, 537
SsiI CCGC 2 cut(s) 78, 275
SspMI CTAG 1 cut(s) 335
StyD4I CCNGG 1 cut(s) 46
TaaI ACNGT 2 cut(s) 252, 311
TasI AATT 5 cut(s) 103, 191, 210, 218, 537
TfiI GAWTC 1 cut(s) 92
Tru1I TTAA 7 cut(s) 102, 123, 182, 194, 243, 261, 401
Tru9I TTAA 7 cut(s) 102, 123, 182, 194, 243, 261, 401
TscAI CASTG 1 cut(s) 314
TseI GCWGC 1 cut(s) 452
TspDTI ATGAA 2 cut(s) 358, 545
TspGWI ACGGA 1 cut(s) 21
TspRI CASTG 1 cut(s) 314
Van91I CCANNNNNTGG 1 cut(s) 71
Vha464I CTTAAG 1 cut(s) 181
XapI RAATTY 1 cut(s) 537
XspI CTAG 1 cut(s) 335
Zsp2I ATGCAT 1 cut(s) 324
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.