Rroxscaffold_1G00073180

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0006425
Physical Location & Seq
Forward (+)
94139775 .. 94141870
2096 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00073180.1

Sequence Viewer

Length: 969 bp
ATGTGGCAGGGAATTGAGGAGGTTGTTCATAATCTGGTAGACAAAGCTCATGGTTGCAAGGACACATTTCATACTGAAAACCAGCTCAAGACCAATTTGTCCTATCAGCGGGTCCTTCAGGCACGCCAGGGAGTGTCATATGGTCGTCTAATCCGCGTTCAATTGTGGCCTCCTCCTCCGCCCCGTGATGATGATGATTATAGGGCAACTGTGAGGTATATAGAATACACAATAAGTCAACTTAAGAATGGAATCGTTTCACAACAGATGGTAGATTCGGCTAAGGAAACGGTACGCCGCCTTAGATCAAAAGGATATTCCAGCTTAAATGAGGATGAAGCAATCACTCTAAAGGACAGCATTCACTTCCTTGGTAGGCTAGAAAGCACCCCCTCTCCCTTTAGGGAGAGGTTTCTTAACTTTGCTGAAGACGTTCCAAGCCGTGTCCGCTGCCTCCGTCAAATGCAGGAAACATTGATTGATCAGCCAAATCTTGTAGAGCAAGAGAGACAATGCATAGCCGAAATTCAGAACAGAAATCTGCAAGAGTTAAATTACCCTAATCTGCAGAGTGTTAATCCTGAGGTTCTGACAGCGAAGTGTTCTAAAACCAACGAGAATATTAAATTACCCTTAGCTGACAATGGAGGAGAAAGGCAGCCAGAGTTCGTGATATTTGATGATGATGATGTAGAAATCTGCAAAAAACGGAAAAGAAGAGAGATGGAGGACTTGGAAGAAGCTTATAGTATACAGACCCAATTGGATGCAAAAGTTAATGATATCAAGTTGGAAGAGATCAATGCTGGGAGAGAAAAAAATAAAAGTGAGGATCAGGAAGACTTGACAGCTTTACGTGTGCATGAGAACAAGATAAACAACAGATTCAAGAAGATGGAGTTGGCCAGGAAAGCTCAATCAGAATTTGACAAATTTAATCTCCAATTTGACGAATTTGATCGCCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

322

Amino Acids

37.73

Weight (kDa)

5.43

Isoelectric Point (pI)

53.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 97
AccI GTMKAC 2 cut(s) 39, 751
AccII CGCG 1 cut(s) 156
AciI CCGC 5 cut(s) 109, 154, 179, 298, 448
AclWI GGATC 1 cut(s) 840
AcoI YGGCCR 1 cut(s) 903
AcsI RAATTY 4 cut(s) 525, 923, 932, 953
AcuI CTGAAG 2 cut(s) 101, 447
AfaI GTAC 1 cut(s) 294
AfiI CCNNNNNNNGG 1 cut(s) 108
AflII CTTAAG 1 cut(s) 242
AflIII ACRYGT 1 cut(s) 856
AgsI TTSAA 2 cut(s) 161, 889
AjnI CCWGG 2 cut(s) 126, 905
AjuI GAANNNNNNNTTGG 2 cut(s) 884, 916
AluBI AGCT 7 cut(s) 47, 85, 324, 638, 743, 851, 914
AluI AGCT 7 cut(s) 47, 85, 324, 638, 743, 851, 914
Alw26I GTCTC 1 cut(s) 502
AlwI GGATC 1 cut(s) 840
AoxI GGCC 2 cut(s) 167, 903
ApeKI GCWGC 2 cut(s) 450, 658
ApoI RAATTY 4 cut(s) 525, 923, 932, 953
Asp700I GAANNNNTTC 2 cut(s) 256, 432
AspS9I GGNCC 1 cut(s) 112
AvaII GGWCC 1 cut(s) 112
AxyI CCTNAGG 1 cut(s) 582
BalI TGGCCA 1 cut(s) 905
BbsI GAAGAC 2 cut(s) 435, 846
BbvI GCAGC 2 cut(s) 437, 670
BccI CCATC 3 cut(s) 262, 718, 889
BceAI ACGGC 1 cut(s) 426
BciT130I CCWGG 2 cut(s) 128, 907
BclI TGATCA 1 cut(s) 481
BcoDI GTCTC 1 cut(s) 502
BfaI CTAG 1 cut(s) 380
BfmI CTRYAG 1 cut(s) 566
BfrI CTTAAG 1 cut(s) 242
BisI GCNGC 3 cut(s) 298, 451, 659
BlsI GCNGC 3 cut(s) 299, 452, 660
Bme1390I CCNGG 2 cut(s) 128, 907
Bme18I GGWCC 1 cut(s) 112
BmgT120I GGNCC 1 cut(s) 112
BmiI GGNNCC 1 cut(s) 113
BmrFI CCNGG 2 cut(s) 128, 907
BmsI GCATC 1 cut(s) 757
BpiI GAAGAC 2 cut(s) 435, 846
Bpu10I CCTNAGC 2 cut(s) 282, 634
BpuEI CTTGAG 1 cut(s) 71
BsaAI YACGTR 1 cut(s) 857
BsaJI CCNNGG 2 cut(s) 127, 370
BsaXI ACNNNNNCTCC 2 cut(s) 379, 409
Bsc4I CCNNNNNNNGG 1 cut(s) 108
Bse21I CCTNAGG 1 cut(s) 582
BseBI CCWGG 2 cut(s) 128, 907
BseDI CCNNGG 2 cut(s) 127, 370
BseGI GGATG 2 cut(s) 340, 772
BseLI CCNNNNNNNGG 1 cut(s) 108
BseMII CTCAG 1 cut(s) 573
BseRI GAGGAG 4 cut(s) 32, 162, 165, 663
BseXI GCAGC 2 cut(s) 437, 670
BseYI CCCAGC 1 cut(s) 806
Bsh1236I CGCG 1 cut(s) 156
BshFI GGCC 2 cut(s) 169, 905
BslI CCNNNNNNNGG 1 cut(s) 108
BsmAI GTCTC 1 cut(s) 502
BsmI GAATGC 1 cut(s) 360
BsnI GGCC 2 cut(s) 169, 905
Bsp143I GATC 5 cut(s) 305, 481, 798, 832, 958
BspACI CCGC 5 cut(s) 109, 154, 179, 298, 448
BspANI GGCC 2 cut(s) 169, 905
BspCNI CTCAG 1 cut(s) 574
BspFNI CGCG 1 cut(s) 156
BspLI GGNNCC 1 cut(s) 113
BspMAI CTGCAG 1 cut(s) 570
BspPI GGATC 1 cut(s) 840
BspTI CTTAAG 1 cut(s) 242
BssECI CCNNGG 2 cut(s) 127, 370
BssMI GATC 5 cut(s) 305, 481, 798, 832, 958
BssNAI GTATAC 1 cut(s) 752
BssT1I CCWWGG 1 cut(s) 370
Bst1107I GTATAC 1 cut(s) 752
Bst2UI CCWGG 2 cut(s) 128, 907
Bst4CI ACNGT 2 cut(s) 211, 292
Bst6I CTCTTC 2 cut(s) 712, 789
BstAFI CTTAAG 1 cut(s) 242
BstBAI YACGTR 1 cut(s) 857
BstC8I GCNNGC 1 cut(s) 124
BstDEI CTNAG 4 cut(s) 282, 302, 582, 634
BstF5I GGATG 2 cut(s) 340, 772
BstFNI CGCG 1 cut(s) 156
BstKTI GATC 5 cut(s) 308, 484, 801, 835, 961
BstMAI GTCTC 1 cut(s) 502
BstMBI GATC 5 cut(s) 305, 481, 798, 832, 958
BstMWI GCNNNNNNNGC 2 cut(s) 447, 911
BstNI CCWGG 2 cut(s) 128, 907
BstSCI CCNGG 2 cut(s) 126, 905
BstSFI CTRYAG 1 cut(s) 566
BstUI CGCG 1 cut(s) 156
BstV1I GCAGC 2 cut(s) 437, 670
BstV2I GAAGAC 2 cut(s) 435, 846
BstZ17I GTATAC 1 cut(s) 752
Bsu36I CCTNAGG 1 cut(s) 582
BsuRI GGCC 2 cut(s) 169, 905
BtsCI GGATG 2 cut(s) 340, 772
Cac8I GCNNGC 1 cut(s) 124
Cfr13I GGNCC 1 cut(s) 112
Csp6I GTAC 1 cut(s) 293
CviAII CATG 2 cut(s) 50, 863
CviQI GTAC 1 cut(s) 293
DdeI CTNAG 4 cut(s) 282, 302, 582, 634
DpnI GATC 5 cut(s) 307, 483, 800, 834, 960
DpnII GATC 5 cut(s) 305, 481, 798, 832, 958
DrdI GACNNNNNNGTC 1 cut(s) 97
DseDI GACNNNNNNGTC 1 cut(s) 97
EaeI YGGCCR 1 cut(s) 903
Eam1104I CTCTTC 2 cut(s) 712, 789
EarI CTCTTC 2 cut(s) 712, 789
EciI GGCGGA 1 cut(s) 168
Eco130I CCWWGG 1 cut(s) 370
Eco32I GATATC 1 cut(s) 784
Eco47I GGWCC 1 cut(s) 112
Eco57I CTGAAG 2 cut(s) 101, 447
Eco81I CCTNAGG 1 cut(s) 582
EcoO109I RGGNCCY 1 cut(s) 112
EcoRII CCWGG 2 cut(s) 126, 905
EcoRV GATATC 1 cut(s) 784
EcoT14I CCWWGG 1 cut(s) 370
EcoT22I ATGCAT 1 cut(s) 518
ErhI CCWWGG 1 cut(s) 370
FaeI CATG 2 cut(s) 53, 866
FatI CATG 2 cut(s) 49, 862
FauI CCCGC 1 cut(s) 102
FauNDI CATATG 1 cut(s) 139
FbaI TGATCA 1 cut(s) 481
FblI GTMKAC 2 cut(s) 39, 751
Fnu4HI GCNGC 3 cut(s) 298, 451, 659
FokI GGATG 2 cut(s) 347, 779
Fsp4HI GCNGC 3 cut(s) 298, 451, 659
FspBI CTAG 1 cut(s) 380
GluI GCNGC 3 cut(s) 298, 451, 659
GsaI CCCAGC 1 cut(s) 810
HaeIII GGCC 2 cut(s) 169, 905
Hin1II CATG 2 cut(s) 53, 866
HincII GTYRAC 1 cut(s) 239
HindII GTYRAC 1 cut(s) 239
HindIII AAGCTT 1 cut(s) 741
HinfI GANTC 3 cut(s) 252, 275, 885
Hpy166II GTNNAC 3 cut(s) 40, 239, 752
Hpy188I TCNGA 3 cut(s) 531, 591, 922
Hpy188III TCNNGA 5 cut(s) 88, 581, 670, 836, 889
Hpy8I GTNNAC 3 cut(s) 40, 239, 752
HpyAV CCTTC 1 cut(s) 125
HpyCH4III ACNGT 2 cut(s) 211, 292
HpyCH4IV ACGT 2 cut(s) 432, 856
HpyCH4V TGCA 8 cut(s) 57, 466, 516, 544, 568, 702, 770, 862
HpyF10VI GCNNNNNNNGC 2 cut(s) 447, 911
HpyF3I CTNAG 4 cut(s) 282, 302, 582, 634
HpySE526I ACGT 2 cut(s) 432, 856
Hsp92II CATG 2 cut(s) 53, 866
Ksp22I TGATCA 1 cut(s) 481
Kzo9I GATC 5 cut(s) 305, 481, 798, 832, 958
Lsp1109I GCAGC 2 cut(s) 437, 670
LweI GCATC 1 cut(s) 757
MaeI CTAG 1 cut(s) 380
MaeII ACGT 2 cut(s) 432, 856
MalI GATC 5 cut(s) 307, 483, 800, 834, 960
MboI GATC 5 cut(s) 305, 481, 798, 832, 958
MboII GAAGA 6 cut(s) 440, 729, 749, 806, 851, 904
MfeI CAATTG 2 cut(s) 161, 761
MlsI TGGCCA 1 cut(s) 905
MluNI TGGCCA 1 cut(s) 905
MmeI TCCRAC 1 cut(s) 771
Mox20I TGGCCA 1 cut(s) 905
Mph1103I ATGCAT 1 cut(s) 518
MroXI GAANNNNTTC 2 cut(s) 256, 432
MscI TGGCCA 1 cut(s) 905
MseI TTAA 8 cut(s) 243, 326, 417, 551, 576, 624, 777, 936
Msp20I TGGCCA 1 cut(s) 905
MspA1I CMGCKG 2 cut(s) 109, 450
MspCI CTTAAG 1 cut(s) 242
MspR9I CCNGG 2 cut(s) 128, 907
MunI CAATTG 2 cut(s) 161, 761
Mva1269I GAATGC 1 cut(s) 360
MvaI CCWGG 2 cut(s) 128, 907
MvnI CGCG 1 cut(s) 156
MwoI GCNNNNNNNGC 2 cut(s) 447, 911
NdeI CATATG 1 cut(s) 139
NdeII GATC 5 cut(s) 305, 481, 798, 832, 958
NlaIII CATG 2 cut(s) 53, 866
NlaIV GGNNCC 1 cut(s) 113
NsiI ATGCAT 1 cut(s) 518
PctI GAATGC 1 cut(s) 360
PdmI GAANNNNTTC 2 cut(s) 256, 432
PfeI GAWTC 3 cut(s) 252, 275, 885
PkrI GCNGC 3 cut(s) 299, 452, 660
Ppu21I YACGTR 1 cut(s) 857
PpuMI RGGWCCY 1 cut(s) 112
Psp5II RGGWCCY 1 cut(s) 112
Psp6I CCWGG 2 cut(s) 126, 905
PspFI CCCAGC 1 cut(s) 806
PspGI CCWGG 2 cut(s) 126, 905
PspN4I GGNNCC 1 cut(s) 113
PspPI GGNCC 1 cut(s) 112
PspPPI RGGWCCY 1 cut(s) 112
PstI CTGCAG 1 cut(s) 570
RsaI GTAC 1 cut(s) 294
RsaNI GTAC 1 cut(s) 293
SaqAI TTAA 8 cut(s) 243, 326, 417, 551, 576, 624, 777, 936
SatI GCNGC 3 cut(s) 298, 451, 659
Sau3AI GATC 5 cut(s) 305, 481, 798, 832, 958
Sau96I GGNCC 1 cut(s) 112
ScrFI CCNGG 2 cut(s) 128, 907
SfaNI GCATC 1 cut(s) 757
SfcI CTRYAG 1 cut(s) 566
SinI GGWCC 1 cut(s) 112
SmlI CTYRAG 2 cut(s) 86, 242
SmoI CTYRAG 2 cut(s) 86, 242
SsiI CCGC 5 cut(s) 109, 154, 179, 298, 448
SspI AATATT 1 cut(s) 622
SspMI CTAG 1 cut(s) 380
StyD4I CCNGG 2 cut(s) 126, 905
StyI CCWWGG 1 cut(s) 370
TaaI ACNGT 2 cut(s) 211, 292
TaiI ACGT 2 cut(s) 435, 859
TauI GCSGC 1 cut(s) 300
TfiI GAWTC 3 cut(s) 252, 275, 885
Tru1I TTAA 8 cut(s) 243, 326, 417, 551, 576, 624, 777, 936
Tru9I TTAA 8 cut(s) 243, 326, 417, 551, 576, 624, 777, 936
TseI GCWGC 2 cut(s) 450, 658
TspDTI ATGAA 3 cut(s) 17, 59, 351
TspGWI ACGGA 2 cut(s) 446, 724
Vha464I CTTAAG 1 cut(s) 242
VpaK11BI GGWCC 1 cut(s) 112
XapI RAATTY 4 cut(s) 525, 923, 932, 953
XmiI GTMKAC 2 cut(s) 39, 751
XmnI GAANNNNTTC 2 cut(s) 256, 432
XspI CTAG 1 cut(s) 380
Zsp2I ATGCAT 1 cut(s) 518
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.