Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0006425

Physical Location & Seq

Genomic Coordinates Reverse (-)

1750467 .. 1751746

Gene Structure 1280 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G002020.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1026 bp

ATGGTGAGAAGCCGTAAGAAGCACACTTTTCGATTGTTATCGAGGGATCGGTTTAGTATTGAATTTCAACAAGTTGAGCAGAGTATGATTGACCAAGAGGTGTTGAGGGAGCGCGTCGATGGAGTTGGAAACCCAACACCTGAGGTAGAAAACCAGCTCAAGACCAATTTGTCCTACCAGCGGGTCCTTCAGGCACGCCAGGGAGTGCCATATGGTGGTCTAATCCGCGTTCAATTGCGGCCTCCTCCTCCGCCCCGTGATGATTATAGGGCAACTGTGAGGTATATAGAATACACAATAAGTCAACTTAAGAATGGAATCGTTTCACAACAGATGGTAGATTCGGCTAAGGAAACGGTACGCCGCCTTAGATCGAAAGGATATTCCAGCTTAGATGAGGATGAAGCAATCACTCTAAAGGACAGCATTCACTTCCTTGGTAGGCTGGAAAGCACCCCCTCTCCCTTTAGGGAGAGGTTTCTTAACTTTGCTGAAGACGTTCCAAGCCGTGTCCGCTGCCTCCGTCAAATGCAGGAAACATTGATTGATCAGCCAAATCTTGTAGAGCAAGAGAGACAATGCATAGCCGAAATTCAGAACAGAAATCTGCAAGAGTTAAATTACCCTAATCTGCAGAGTGTAAATCCTGAGGTTCTGACAGCTAAGTCTTCTAAAACCAACGAGAATATTAAATTACCCTTAGCAGACAATGGAGGAGAAAGGCAGCCAGAGTTCGTGATATTTGATGATGATGTAGAAATCTGCAAAAAACGGAAAAGAAGAGAGATGGAGGACTTGGAAGAAGCTTATAGTATACAGACCCAATTGGATGCAAAAGTTAATGATATTGAGGCGCTTAATATCAAGTTAGAAGAGATCAATGCTAGAAGAGAAAAAAATAAAAGTGAGGATCAGGAAGACTTGACAGCTTTACGTGTGCATGAGAAAAAGATAAACAACAGATTCAAGAAGATGGAGTTGGCTAGGAAAGCTCAATCAGAATTTGACGAATTTGATCGCCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

341

Amino Acids

39.96

Weight (kDa)

6.14

Isoelectric Point (pI)

60.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006425)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0455531 RchiOBHm_Chr3g0455581 RchiOBHm_Chr5g0002701 RchiOBHm_Chr6g0248951
rosa_laevigata	RLG00000025338
rosa_multiflora	Rmu_co8241263.1_g000001 Rmu_sc0006994.1_g000001 Rmu_sc0009084.1_g000018
rosa_roxburghii	Rroxscaffold_1G00073180 Rroxscaffold_6G00423550 Rroxscaffold_6G00424060 Rroxscaffold_6G00424070
rosa_rugosa	Rorug03G0008400 Rorug03G0008400 Rorug04G0398400
rosa_samantha	Rh3DG071500 Rh3DG071600 Rh4CG231700 Rh5AG021700 Rh5BG024600 Rh5BG366200 Rh5CG024000 Rh5DG023000 Rh6AG051900
rosa_wichuraiana	Rw3G005400 Rw3G005430 Rw5G002020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	169, 664
AccB7I	CCANNNNNTGG	1 cut(s)	215
AccI	GTMKAC	1 cut(s)	814
AccII	CGCG	2 cut(s)	114, 228
AciI	CCGC	6 cut(s)	181, 226, 238, 251, 364, 514
AclWI	GGATC	2 cut(s)	54, 918
AcsI	RAATTY	4 cut(s)	62, 591, 1001, 1010
AcuI	CTGAAG	2 cut(s)	173, 513
AfaI	GTAC	1 cut(s)	360
AfiI	CCNNNNNNNGG	2 cut(s)	180, 215
AflII	CTTAAG	1 cut(s)	308
AflIII	ACRYGT	1 cut(s)	934
AgsI	TTSAA	4 cut(s)	62, 68, 233, 967
AjnI	CCWGG	1 cut(s)	198
AjuI	GAANNNNNNNTTGG	2 cut(s)	962, 994
AluBI	AGCT	6 cut(s)	157, 390, 662, 806, 929, 992
AluI	AGCT	6 cut(s)	157, 390, 662, 806, 929, 992
Alw26I	GTCTC	1 cut(s)	568
AlwI	GGATC	2 cut(s)	54, 918
AoxI	GGCC	1 cut(s)	239
ApeKI	GCWGC	2 cut(s)	516, 724
ApoI	RAATTY	4 cut(s)	62, 591, 1001, 1010
Asp700I	GAANNNNTTC	2 cut(s)	322, 498
AspLEI	GCGC	2 cut(s)	114, 856
AspS9I	GGNCC	1 cut(s)	184
AsuHPI	GGTGA	1 cut(s)	16
AvaII	GGWCC	1 cut(s)	184
AxyI	CCTNAGG	2 cut(s)	141, 648
BbsI	GAAGAC	3 cut(s)	501, 660, 924
BbvI	GCAGC	2 cut(s)	503, 736
BccI	CCATC	4 cut(s)	113, 328, 781, 967
BceAI	ACGGC	1 cut(s)	492
BcgI	CGANNNNNNTGC	2 cut(s)	11, 45
BciT130I	CCWGG	1 cut(s)	200
BclI	TGATCA	1 cut(s)	547
BcoDI	GTCTC	1 cut(s)	568
BfaI	CTAG	2 cut(s)	885, 984
BfmI	CTRYAG	1 cut(s)	632
BfoI	RGCGCY	1 cut(s)	857
BfrI	CTTAAG	1 cut(s)	308
BisI	GCNGC	4 cut(s)	239, 364, 517, 725
BlsI	GCNGC	4 cut(s)	240, 365, 518, 726
Bme1390I	CCNGG	1 cut(s)	200
Bme18I	GGWCC	1 cut(s)	184
BmgT120I	GGNCC	1 cut(s)	184
BmiI	GGNNCC	1 cut(s)	185
BmrFI	CCNGG	1 cut(s)	200
BmsI	GCATC	1 cut(s)	820
BpiI	GAAGAC	3 cut(s)	501, 660, 924
Bpu10I	CCTNAGC	2 cut(s)	348, 700
BpuEI	CTTGAG	1 cut(s)	143
BsaAI	YACGTR	1 cut(s)	935
BsaBI	GATNNNNATC	1 cut(s)	37
BsaJI	CCNNGG	2 cut(s)	199, 436
BsaXI	ACNNNNNCTCC	2 cut(s)	445, 475
Bsc4I	CCNNNNNNNGG	2 cut(s)	180, 215
Bse21I	CCTNAGG	2 cut(s)	141, 648
Bse8I	GATNNNNATC	1 cut(s)	37
BseBI	CCWGG	1 cut(s)	200
BseDI	CCNNGG	2 cut(s)	199, 436
BseGI	GGATG	2 cut(s)	406, 835
BseJI	GATNNNNATC	1 cut(s)	37
BseLI	CCNNNNNNNGG	2 cut(s)	180, 215
BseMII	CTCAG	2 cut(s)	132, 639
BseRI	GAGGAG	3 cut(s)	234, 237, 729
BseXI	GCAGC	2 cut(s)	503, 736
Bsh1236I	CGCG	2 cut(s)	114, 228
BshFI	GGCC	1 cut(s)	241
BslI	CCNNNNNNNGG	2 cut(s)	180, 215
BsmAI	GTCTC	1 cut(s)	568
BsmI	GAATGC	1 cut(s)	426
BsnI	GGCC	1 cut(s)	241
Bsp143I	GATC	6 cut(s)	46, 371, 547, 876, 910, 1015
BspACI	CCGC	6 cut(s)	181, 226, 238, 251, 364, 514
BspANI	GGCC	1 cut(s)	241
BspCNI	CTCAG	2 cut(s)	133, 640
BspFNI	CGCG	2 cut(s)	114, 228
BspLI	GGNNCC	1 cut(s)	185
BspMAI	CTGCAG	1 cut(s)	636
BspPI	GGATC	2 cut(s)	54, 918
BspTI	CTTAAG	1 cut(s)	308
BssECI	CCNNGG	2 cut(s)	199, 436
BssMI	GATC	6 cut(s)	46, 371, 547, 876, 910, 1015
BssNAI	GTATAC	1 cut(s)	815
BssT1I	CCWWGG	1 cut(s)	436
Bst1107I	GTATAC	1 cut(s)	815
Bst2UI	CCWGG	1 cut(s)	200
Bst4CI	ACNGT	2 cut(s)	277, 358
Bst6I	CTCTTC	3 cut(s)	775, 867, 883
BstAFI	CTTAAG	1 cut(s)	308
BstBAI	YACGTR	1 cut(s)	935
BstC8I	GCNNGC	1 cut(s)	196
BstDEI	CTNAG	7 cut(s)	141, 348, 368, 391, 648, 663, 700
BstF5I	GGATG	2 cut(s)	406, 835
BstFNI	CGCG	2 cut(s)	114, 228
BstH2I	RGCGCY	1 cut(s)	857
BstHHI	GCGC	2 cut(s)	114, 856
BstKTI	GATC	6 cut(s)	49, 374, 550, 879, 913, 1018
BstMAI	GTCTC	1 cut(s)	568
BstMBI	GATC	6 cut(s)	46, 371, 547, 876, 910, 1015
BstMWI	GCNNNNNNNGC	2 cut(s)	513, 989
BstNI	CCWGG	1 cut(s)	200
BstSCI	CCNGG	1 cut(s)	198
BstSFI	CTRYAG	1 cut(s)	632
BstUI	CGCG	2 cut(s)	114, 228
BstV1I	GCAGC	2 cut(s)	503, 736
BstV2I	GAAGAC	3 cut(s)	501, 660, 924
BstZ17I	GTATAC	1 cut(s)	815
Bsu36I	CCTNAGG	2 cut(s)	141, 648
BsuRI	GGCC	1 cut(s)	241
BtsCI	GGATG	2 cut(s)	406, 835
Cac8I	GCNNGC	1 cut(s)	196
CfoI	GCGC	2 cut(s)	114, 856
Cfr13I	GGNCC	1 cut(s)	184
CseI	GACGC	1 cut(s)	103
Csp6I	GTAC	1 cut(s)	359
CviAII	CATG	1 cut(s)	941
CviQI	GTAC	1 cut(s)	359
DdeI	CTNAG	7 cut(s)	141, 348, 368, 391, 648, 663, 700
DpnI	GATC	6 cut(s)	48, 373, 549, 878, 912, 1017
DpnII	GATC	6 cut(s)	46, 371, 547, 876, 910, 1015
DrdI	GACNNNNNNGTC	2 cut(s)	169, 664
DseDI	GACNNNNNNGTC	2 cut(s)	169, 664
Eam1104I	CTCTTC	3 cut(s)	775, 867, 883
EarI	CTCTTC	3 cut(s)	775, 867, 883
EciI	GGCGGA	1 cut(s)	240
Eco130I	CCWWGG	1 cut(s)	436
Eco47I	GGWCC	1 cut(s)	184
Eco57I	CTGAAG	2 cut(s)	173, 513
Eco81I	CCTNAGG	2 cut(s)	141, 648
EcoO109I	RGGNCCY	1 cut(s)	184
EcoRII	CCWGG	1 cut(s)	198
EcoT14I	CCWWGG	1 cut(s)	436
EcoT22I	ATGCAT	1 cut(s)	584
ErhI	CCWWGG	1 cut(s)	436
FaeI	CATG	1 cut(s)	944
FatI	CATG	1 cut(s)	940
FauI	CCCGC	1 cut(s)	174
FauNDI	CATATG	1 cut(s)	211
FbaI	TGATCA	1 cut(s)	547
FblI	GTMKAC	1 cut(s)	814
Fnu4HI	GCNGC	4 cut(s)	239, 364, 517, 725
FokI	GGATG	2 cut(s)	413, 842
Fsp4HI	GCNGC	4 cut(s)	239, 364, 517, 725
FspBI	CTAG	2 cut(s)	885, 984
GlaI	GCGC	2 cut(s)	113, 855
GluI	GCNGC	4 cut(s)	239, 364, 517, 725
HaeII	RGCGCY	1 cut(s)	857
HaeIII	GGCC	1 cut(s)	241
HgaI	GACGC	1 cut(s)	103
HhaI	GCGC	2 cut(s)	114, 856
Hin1II	CATG	1 cut(s)	944
Hin6I	GCGC	2 cut(s)	112, 854
HinP1I	GCGC	2 cut(s)	112, 854
HincII	GTYRAC	1 cut(s)	305
HindII	GTYRAC	1 cut(s)	305
HindIII	AAGCTT	1 cut(s)	804
HinfI	GANTC	3 cut(s)	318, 341, 963
HphI	GGTGA	1 cut(s)	16
Hpy166II	GTNNAC	2 cut(s)	305, 815
Hpy188I	TCNGA	3 cut(s)	597, 657, 1000
Hpy188III	TCNNGA	5 cut(s)	160, 647, 736, 914, 967
Hpy8I	GTNNAC	2 cut(s)	305, 815
Hpy99I	CGWCG	1 cut(s)	119
HpyAV	CCTTC	1 cut(s)	197
HpyCH4III	ACNGT	2 cut(s)	277, 358
HpyCH4IV	ACGT	2 cut(s)	498, 934
HpyCH4V	TGCA	7 cut(s)	532, 582, 610, 634, 765, 833, 940
HpyF10VI	GCNNNNNNNGC	2 cut(s)	513, 989
HpyF3I	CTNAG	7 cut(s)	141, 348, 368, 391, 648, 663, 700
HpySE526I	ACGT	2 cut(s)	498, 934
Hsp92II	CATG	1 cut(s)	944
HspAI	GCGC	2 cut(s)	112, 854
Ksp22I	TGATCA	1 cut(s)	547
Kzo9I	GATC	6 cut(s)	46, 371, 547, 876, 910, 1015
LmnI	GCTCC	1 cut(s)	109
Lsp1109I	GCAGC	2 cut(s)	503, 736
LweI	GCATC	1 cut(s)	820
MaeI	CTAG	2 cut(s)	885, 984
MaeII	ACGT	2 cut(s)	498, 934
MalI	GATC	6 cut(s)	48, 373, 549, 878, 912, 1017
MboI	GATC	6 cut(s)	46, 371, 547, 876, 910, 1015
MboII	GAAGA	8 cut(s)	506, 660, 792, 812, 884, 900, 929, 982
MfeI	CAATTG	2 cut(s)	233, 824
MluCI	AATT	9 cut(s)	62, 166, 233, 591, 619, 692, 824, 1001, 1010
MmeI	TCCRAC	1 cut(s)	106
Mph1103I	ATGCAT	1 cut(s)	584
MroXI	GAANNNNTTC	2 cut(s)	322, 498
MseI	TTAA	6 cut(s)	309, 483, 617, 690, 840, 858
MspA1I	CMGCKG	2 cut(s)	181, 516
MspCI	CTTAAG	1 cut(s)	308
MspR9I	CCNGG	1 cut(s)	200
MunI	CAATTG	2 cut(s)	233, 824
Mva1269I	GAATGC	1 cut(s)	426
MvaI	CCWGG	1 cut(s)	200
MvnI	CGCG	2 cut(s)	114, 228
MwoI	GCNNNNNNNGC	2 cut(s)	513, 989
NdeI	CATATG	1 cut(s)	211
NdeII	GATC	6 cut(s)	46, 371, 547, 876, 910, 1015
NlaIII	CATG	1 cut(s)	944
NlaIV	GGNNCC	1 cut(s)	185
NsiI	ATGCAT	1 cut(s)	584
PctI	GAATGC	1 cut(s)	426
PdmI	GAANNNNTTC	2 cut(s)	322, 498
PfeI	GAWTC	3 cut(s)	318, 341, 963
PflMI	CCANNNNNTGG	1 cut(s)	215
PkrI	GCNGC	4 cut(s)	240, 365, 518, 726
Ppu21I	YACGTR	1 cut(s)	935
PpuMI	RGGWCCY	1 cut(s)	184
Psp5II	RGGWCCY	1 cut(s)	184
Psp6I	CCWGG	1 cut(s)	198
PspGI	CCWGG	1 cut(s)	198
PspN4I	GGNNCC	1 cut(s)	185
PspPI	GGNCC	1 cut(s)	184
PspPPI	RGGWCCY	1 cut(s)	184
PstI	CTGCAG	1 cut(s)	636
RsaI	GTAC	1 cut(s)	360
RsaNI	GTAC	1 cut(s)	359
SaqAI	TTAA	6 cut(s)	309, 483, 617, 690, 840, 858
SatI	GCNGC	4 cut(s)	239, 364, 517, 725
Sau3AI	GATC	6 cut(s)	46, 371, 547, 876, 910, 1015
Sau96I	GGNCC	1 cut(s)	184
ScrFI	CCNGG	1 cut(s)	200
SfaNI	GCATC	1 cut(s)	820
SfcI	CTRYAG	1 cut(s)	632
SinI	GGWCC	1 cut(s)	184
SmlI	CTYRAG	2 cut(s)	158, 308
SmoI	CTYRAG	2 cut(s)	158, 308
Sse9I	AATT	9 cut(s)	62, 166, 233, 591, 619, 692, 824, 1001, 1010
SsiI	CCGC	6 cut(s)	181, 226, 238, 251, 364, 514
SspI	AATATT	1 cut(s)	688
SspMI	CTAG	2 cut(s)	885, 984
StyD4I	CCNGG	1 cut(s)	198
StyI	CCWWGG	1 cut(s)	436
TaaI	ACNGT	2 cut(s)	277, 358
TaiI	ACGT	2 cut(s)	501, 937
TaqI	TCGA	4 cut(s)	31, 41, 117, 374
TasI	AATT	9 cut(s)	62, 166, 233, 591, 619, 692, 824, 1001, 1010
TauI	GCSGC	2 cut(s)	241, 366
TfiI	GAWTC	3 cut(s)	318, 341, 963
Tru1I	TTAA	6 cut(s)	309, 483, 617, 690, 840, 858
Tru9I	TTAA	6 cut(s)	309, 483, 617, 690, 840, 858
TseI	GCWGC	2 cut(s)	516, 724
TspDTI	ATGAA	1 cut(s)	417
TspGWI	ACGGA	2 cut(s)	512, 787
Van91I	CCANNNNNTGG	1 cut(s)	215
Vha464I	CTTAAG	1 cut(s)	308
VpaK11BI	GGWCC	1 cut(s)	184
XapI	RAATTY	4 cut(s)	62, 591, 1001, 1010
XmiI	GTMKAC	1 cut(s)	814
XmnI	GAANNNNTTC	2 cut(s)	322, 498
XspI	CTAG	2 cut(s)	885, 984
Zsp2I	ATGCAT	1 cut(s)	584

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.