Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006994.1

Orthogroup ID

OG0006425

Physical Location & Seq

Genomic Coordinates Forward (+)

14271 .. 15380

Gene Structure 1110 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006994.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 999 bp

atgattttgattttgctgtttgctagtattgaatttcaacaagttgagcagagtatgattgaccaagaggtgttgaaggagtgcgttgatggagttggaaacccaacacctgaggtagaaaaccagctcaagaccaatttgtcctaccagcgggtccttcaggcacgccagggagtgccttatggtggtctaatccgcgttcaattgtggcctcctcctccgccgcgtgatgattatagggcaactgtgaggtatatagaatacacaataagccaacttaagaatggaatcgtttcacaacagatggtagattcggctaaggaaacggtacgccgccttagatcgaaaggatattccagcttagatgaggatgaagcaatcactctaaaggacagcattcacttccttggtaggctagaaagcaccccctctccctttagggagaggtttcttaactttgctgaagacgttccaagccgtgttcgctgcctccgtcaaatgcaggaaacattgattgatcagccaaatcttgtagagcaagagagacaatgcatagctgaaattcagaacagaaatctgcaagagttaaattaccctaatctgcagagtgttaatcctgaggttctgacagcgaagtgttccaaaaccaacgagaatattaaattacccttagctgacaatggaggagaaaggcagccagagttcgtgatatttgatgatgatgatgtagaaatctgcaaaaaacggaaaagaagagagatgaaggacttggaagaagcttatagtatacagacccaattggatgcaaaagttaatgatattgaggctcttaatatcaagttggaagagatcaatgctggaagagaaaaaaataaaagtgaggatcaggaagacttgacagctttacgtgtgcatgagaaaaagataaacaacagattcaagaagatggagttggctaggaaagctcaatcagaatttgacgaatttgatcgcctgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

332

Amino Acids

38.54

Weight (kDa)

5.11

Isoelectric Point (pI)

57.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006425)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0455531 RchiOBHm_Chr3g0455581 RchiOBHm_Chr5g0002701 RchiOBHm_Chr6g0248951
rosa_laevigata	RLG00000025338
rosa_multiflora	Rmu_co8241263.1_g000001 Rmu_sc0006994.1_g000001 Rmu_sc0009084.1_g000018
rosa_roxburghii	Rroxscaffold_1G00073180 Rroxscaffold_6G00423550 Rroxscaffold_6G00424060 Rroxscaffold_6G00424070
rosa_rugosa	Rorug03G0008400 Rorug03G0008400 Rorug04G0398400
rosa_samantha	Rh3DG071500 Rh3DG071600 Rh4CG231700 Rh5AG021700 Rh5BG024600 Rh5BG366200 Rh5CG024000 Rh5DG023000 Rh6AG051900
rosa_wichuraiana	Rw3G005400 Rw3G005430 Rw5G002020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	139
AccI	GTMKAC	1 cut(s)	787
AccII	CGCG	2 cut(s)	198, 226
AciI	CCGC	5 cut(s)	151, 196, 221, 224, 334
AclWI	GGATC	1 cut(s)	891
AcsI	RAATTY	4 cut(s)	32, 561, 974, 983
AcuI	CTGAAG	2 cut(s)	143, 483
AfaI	GTAC	1 cut(s)	330
AfiI	CCNNNNNNNGG	2 cut(s)	150, 185
AflII	CTTAAG	1 cut(s)	278
AflIII	ACRYGT	1 cut(s)	907
AgsI	TTSAA	5 cut(s)	32, 38, 76, 203, 940
AjnI	CCWGG	1 cut(s)	168
AjuI	GAANNNNNNNTTGG	2 cut(s)	935, 967
AluBI	AGCT	7 cut(s)	127, 360, 557, 674, 779, 902, 965
AluI	AGCT	7 cut(s)	127, 360, 557, 674, 779, 902, 965
Alw26I	GTCTC	1 cut(s)	538
AlwI	GGATC	1 cut(s)	891
AoxI	GGCC	1 cut(s)	209
ApeKI	GCWGC	2 cut(s)	486, 694
ApoI	RAATTY	4 cut(s)	32, 561, 974, 983
Asp700I	GAANNNNTTC	2 cut(s)	292, 468
AspS9I	GGNCC	1 cut(s)	154
AvaII	GGWCC	1 cut(s)	154
AxyI	CCTNAGG	2 cut(s)	111, 618
BbsI	GAAGAC	2 cut(s)	471, 897
BbvI	GCAGC	2 cut(s)	473, 706
BccI	CCATC	3 cut(s)	83, 298, 940
BceAI	ACGGC	1 cut(s)	462
BciT130I	CCWGG	1 cut(s)	170
BclI	TGATCA	1 cut(s)	517
BcoDI	GTCTC	1 cut(s)	538
BfaI	CTAG	3 cut(s)	24, 416, 957
BfmI	CTRYAG	1 cut(s)	602
BfrI	CTTAAG	1 cut(s)	278
BisI	GCNGC	4 cut(s)	224, 334, 487, 695
BlsI	GCNGC	4 cut(s)	225, 335, 488, 696
Bme1390I	CCNGG	1 cut(s)	170
Bme18I	GGWCC	1 cut(s)	154
BmgT120I	GGNCC	1 cut(s)	154
BmiI	GGNNCC	1 cut(s)	155
BmrFI	CCNGG	1 cut(s)	170
BmsI	GCATC	1 cut(s)	793
BpiI	GAAGAC	2 cut(s)	471, 897
Bpu10I	CCTNAGC	2 cut(s)	318, 670
BpuEI	CTTGAG	1 cut(s)	113
BsaAI	YACGTR	1 cut(s)	908
BsaJI	CCNNGG	2 cut(s)	169, 406
BsaXI	ACNNNNNCTCC	2 cut(s)	415, 445
Bsc4I	CCNNNNNNNGG	2 cut(s)	150, 185
Bse21I	CCTNAGG	2 cut(s)	111, 618
BseBI	CCWGG	1 cut(s)	170
BseDI	CCNNGG	2 cut(s)	169, 406
BseGI	GGATG	2 cut(s)	376, 808
BseLI	CCNNNNNNNGG	2 cut(s)	150, 185
BseMII	CTCAG	2 cut(s)	102, 609
BseRI	GAGGAG	3 cut(s)	204, 207, 699
BseXI	GCAGC	2 cut(s)	473, 706
Bsh1236I	CGCG	2 cut(s)	198, 226
BshFI	GGCC	1 cut(s)	211
BslI	CCNNNNNNNGG	2 cut(s)	150, 185
BsmAI	GTCTC	1 cut(s)	538
BsmI	GAATGC	1 cut(s)	396
BsnI	GGCC	1 cut(s)	211
Bsp143I	GATC	5 cut(s)	341, 517, 849, 883, 988
BspACI	CCGC	5 cut(s)	151, 196, 221, 224, 334
BspANI	GGCC	1 cut(s)	211
BspCNI	CTCAG	2 cut(s)	103, 610
BspFNI	CGCG	2 cut(s)	198, 226
BspLI	GGNNCC	1 cut(s)	155
BspMAI	CTGCAG	1 cut(s)	606
BspPI	GGATC	1 cut(s)	891
BspTI	CTTAAG	1 cut(s)	278
BssECI	CCNNGG	2 cut(s)	169, 406
BssMI	GATC	5 cut(s)	341, 517, 849, 883, 988
BssNAI	GTATAC	1 cut(s)	788
BssT1I	CCWWGG	1 cut(s)	406
Bst1107I	GTATAC	1 cut(s)	788
Bst2UI	CCWGG	1 cut(s)	170
Bst4CI	ACNGT	2 cut(s)	247, 328
Bst6I	CTCTTC	3 cut(s)	748, 840, 856
BstAFI	CTTAAG	1 cut(s)	278
BstBAI	YACGTR	1 cut(s)	908
BstC8I	GCNNGC	1 cut(s)	166
BstDEI	CTNAG	6 cut(s)	111, 318, 338, 361, 618, 670
BstF5I	GGATG	2 cut(s)	376, 808
BstFNI	CGCG	2 cut(s)	198, 226
BstKTI	GATC	5 cut(s)	344, 520, 852, 886, 991
BstMAI	GTCTC	1 cut(s)	538
BstMBI	GATC	5 cut(s)	341, 517, 849, 883, 988
BstMWI	GCNNNNNNNGC	2 cut(s)	483, 962
BstNI	CCWGG	1 cut(s)	170
BstSCI	CCNGG	1 cut(s)	168
BstSFI	CTRYAG	1 cut(s)	602
BstUI	CGCG	2 cut(s)	198, 226
BstV1I	GCAGC	2 cut(s)	473, 706
BstV2I	GAAGAC	2 cut(s)	471, 897
BstZ17I	GTATAC	1 cut(s)	788
Bsu36I	CCTNAGG	2 cut(s)	111, 618
BsuRI	GGCC	1 cut(s)	211
BtsCI	GGATG	2 cut(s)	376, 808
Cac8I	GCNNGC	1 cut(s)	166
Cfr13I	GGNCC	1 cut(s)	154
Csp6I	GTAC	1 cut(s)	329
CviAII	CATG	1 cut(s)	914
CviQI	GTAC	1 cut(s)	329
DdeI	CTNAG	6 cut(s)	111, 318, 338, 361, 618, 670
DpnI	GATC	5 cut(s)	343, 519, 851, 885, 990
DpnII	GATC	5 cut(s)	341, 517, 849, 883, 988
DrdI	GACNNNNNNGTC	1 cut(s)	139
DseDI	GACNNNNNNGTC	1 cut(s)	139
Eam1104I	CTCTTC	3 cut(s)	748, 840, 856
EarI	CTCTTC	3 cut(s)	748, 840, 856
EciI	GGCGGA	1 cut(s)	210
Eco130I	CCWWGG	1 cut(s)	406
Eco47I	GGWCC	1 cut(s)	154
Eco57I	CTGAAG	2 cut(s)	143, 483
Eco81I	CCTNAGG	2 cut(s)	111, 618
EcoO109I	RGGNCCY	1 cut(s)	154
EcoRII	CCWGG	1 cut(s)	168
EcoT14I	CCWWGG	1 cut(s)	406
EcoT22I	ATGCAT	1 cut(s)	554
ErhI	CCWWGG	1 cut(s)	406
FaeI	CATG	1 cut(s)	917
FaiI	YATR	9 cut(s)	56, 183, 237, 255, 257, 554, 783, 788, 915
FatI	CATG	1 cut(s)	913
FauI	CCCGC	1 cut(s)	144
FbaI	TGATCA	1 cut(s)	517
FblI	GTMKAC	1 cut(s)	787
Fnu4HI	GCNGC	4 cut(s)	224, 334, 487, 695
FokI	GGATG	2 cut(s)	383, 815
Fsp4HI	GCNGC	4 cut(s)	224, 334, 487, 695
FspBI	CTAG	3 cut(s)	24, 416, 957
GluI	GCNGC	4 cut(s)	224, 334, 487, 695
HaeIII	GGCC	1 cut(s)	211
Hin1II	CATG	1 cut(s)	917
HindIII	AAGCTT	1 cut(s)	777
HinfI	GANTC	3 cut(s)	288, 311, 936
Hpy166II	GTNNAC	1 cut(s)	788
Hpy188I	TCNGA	3 cut(s)	567, 627, 973
Hpy188III	TCNNGA	5 cut(s)	130, 617, 706, 887, 940
Hpy8I	GTNNAC	1 cut(s)	788
HpyAV	CCTTC	3 cut(s)	70, 167, 757
HpyCH4III	ACNGT	2 cut(s)	247, 328
HpyCH4IV	ACGT	2 cut(s)	468, 907
HpyCH4V	TGCA	7 cut(s)	502, 552, 580, 604, 738, 806, 913
HpyF10VI	GCNNNNNNNGC	2 cut(s)	483, 962
HpyF3I	CTNAG	6 cut(s)	111, 318, 338, 361, 618, 670
HpySE526I	ACGT	2 cut(s)	468, 907
Hsp92II	CATG	1 cut(s)	917
Ksp22I	TGATCA	1 cut(s)	517
Kzo9I	GATC	5 cut(s)	341, 517, 849, 883, 988
Lsp1109I	GCAGC	2 cut(s)	473, 706
LweI	GCATC	1 cut(s)	793
MaeI	CTAG	3 cut(s)	24, 416, 957
MaeII	ACGT	2 cut(s)	468, 907
MalI	GATC	5 cut(s)	343, 519, 851, 885, 990
MboI	GATC	5 cut(s)	341, 517, 849, 883, 988
MboII	GAAGA	7 cut(s)	476, 765, 785, 857, 873, 902, 955
MfeI	CAATTG	2 cut(s)	203, 797
MluCI	AATT	9 cut(s)	32, 136, 203, 561, 589, 662, 797, 974, 983
MmeI	TCCRAC	2 cut(s)	76, 822
Mph1103I	ATGCAT	1 cut(s)	554
MroXI	GAANNNNTTC	2 cut(s)	292, 468
MseI	TTAA	7 cut(s)	279, 453, 587, 612, 660, 813, 831
MspA1I	CMGCKG	1 cut(s)	151
MspCI	CTTAAG	1 cut(s)	278
MspR9I	CCNGG	1 cut(s)	170
MunI	CAATTG	2 cut(s)	203, 797
Mva1269I	GAATGC	1 cut(s)	396
MvaI	CCWGG	1 cut(s)	170
MvnI	CGCG	2 cut(s)	198, 226
MwoI	GCNNNNNNNGC	2 cut(s)	483, 962
NdeII	GATC	5 cut(s)	341, 517, 849, 883, 988
NlaIII	CATG	1 cut(s)	917
NlaIV	GGNNCC	1 cut(s)	155
NsiI	ATGCAT	1 cut(s)	554
PcsI	WCGNNNNNNNCGW	1 cut(s)	490
PctI	GAATGC	1 cut(s)	396
PdmI	GAANNNNTTC	2 cut(s)	292, 468
PfeI	GAWTC	3 cut(s)	288, 311, 936
PkrI	GCNGC	4 cut(s)	225, 335, 488, 696
Ppu21I	YACGTR	1 cut(s)	908
PpuMI	RGGWCCY	1 cut(s)	154
Psp5II	RGGWCCY	1 cut(s)	154
Psp6I	CCWGG	1 cut(s)	168
PspGI	CCWGG	1 cut(s)	168
PspN4I	GGNNCC	1 cut(s)	155
PspPI	GGNCC	1 cut(s)	154
PspPPI	RGGWCCY	1 cut(s)	154
PstI	CTGCAG	1 cut(s)	606
RsaI	GTAC	1 cut(s)	330
RsaNI	GTAC	1 cut(s)	329
SaqAI	TTAA	7 cut(s)	279, 453, 587, 612, 660, 813, 831
SatI	GCNGC	4 cut(s)	224, 334, 487, 695
Sau3AI	GATC	5 cut(s)	341, 517, 849, 883, 988
Sau96I	GGNCC	1 cut(s)	154
ScrFI	CCNGG	1 cut(s)	170
SfaNI	GCATC	1 cut(s)	793
SfcI	CTRYAG	1 cut(s)	602
SinI	GGWCC	1 cut(s)	154
SmlI	CTYRAG	2 cut(s)	128, 278
SmoI	CTYRAG	2 cut(s)	128, 278
Sse9I	AATT	9 cut(s)	32, 136, 203, 561, 589, 662, 797, 974, 983
SsiI	CCGC	5 cut(s)	151, 196, 221, 224, 334
SspI	AATATT	1 cut(s)	658
SspMI	CTAG	3 cut(s)	24, 416, 957
StyD4I	CCNGG	1 cut(s)	168
StyI	CCWWGG	1 cut(s)	406
TaaI	ACNGT	2 cut(s)	247, 328
TaiI	ACGT	2 cut(s)	471, 910
TaqI	TCGA	1 cut(s)	344
TasI	AATT	9 cut(s)	32, 136, 203, 561, 589, 662, 797, 974, 983
TauI	GCSGC	2 cut(s)	226, 336
TfiI	GAWTC	3 cut(s)	288, 311, 936
Tru1I	TTAA	7 cut(s)	279, 453, 587, 612, 660, 813, 831
Tru9I	TTAA	7 cut(s)	279, 453, 587, 612, 660, 813, 831
TseI	GCWGC	2 cut(s)	486, 694
TspDTI	ATGAA	2 cut(s)	387, 776
TspGWI	ACGGA	2 cut(s)	482, 760
Vha464I	CTTAAG	1 cut(s)	278
VpaK11BI	GGWCC	1 cut(s)	154
XapI	RAATTY	4 cut(s)	32, 561, 974, 983
XcmI	CCANNNNNNNNNTGG	1 cut(s)	281
XmiI	GTMKAC	1 cut(s)	787
XmnI	GAANNNNTTC	2 cut(s)	292, 468
XspI	CTAG	3 cut(s)	24, 416, 957
Zsp2I	ATGCAT	1 cut(s)	554

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.