RchiOBHm_Chr5g0002701

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0006425
Physical Location & Seq
Reverse (-)
1609323 .. 1611704
2382 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ28405

Sequence Viewer

Length: 618 bp
ATGGCTTCATCATCGAGGACAAGGGATCGGTTTAGTATTGAATTTCAACAAGTTGAGCAGAGTATGATTGACAAAGAGGTGTTGAAGGAGTACGTCGATGGAGTTGGAAACCCAACACCTGAGGTAGAAAACCAGCTCAAGACCAATTTGTCCTACCAGCGGGTCCTTCAGGCACGCCAGGGAGTGCCATATGATCGTCTAATCCGCGTTCAATTGTGGCCTCCTTCTCCGCCCCGTGATGATTATAGGGCAACTGTGAGGTATATAGAATACACAATAAGTCAACTTAAGAATGGAATCGTTTCACTACAGATGGTAGATTCGGCTAAGGAAACGGTACGCCGCCTTAGATCGAAAGGATATTCCAGCTTAGATGAGGATGAAGCAATCACTCTAAAGGACAGCATTCACTTCCTTGGTAGGCTAGAAAGCACCCCCTCTCCCTTCAGGGAGAGGTTTCTTAACTTTGCTGAAGACATCCCAAGCCGCGTCCGCTGCCTCCGTCAAATGCAGGAAACATTGATTGATCAGCCAAATCTTGTAGAGCAAGAGAGACAATGCATAGCTGAAATTCAAAAACAGAATGCATGCCCGCGCTCTAAGAAACCAACAGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

205

Amino Acids

23.84

Weight (kDa)

8.41

Isoelectric Point (pI)

54.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 148
AccII CGCG 3 cut(s) 207, 489, 595
AciI CCGC 7 cut(s) 160, 205, 230, 343, 487, 493, 593
AclWI GGATC 1 cut(s) 33
AcsI RAATTY 2 cut(s) 41, 570
AcuI CTGAAG 3 cut(s) 152, 430, 492
AfaI GTAC 2 cut(s) 92, 339
AfiI CCNNNNNNNGG 1 cut(s) 159
AflII CTTAAG 1 cut(s) 287
AgsI TTSAA 5 cut(s) 41, 47, 85, 212, 575
AjnI CCWGG 1 cut(s) 177
AluBI AGCT 3 cut(s) 136, 369, 566
AluI AGCT 3 cut(s) 136, 369, 566
Alw26I GTCTC 1 cut(s) 547
AlwI GGATC 1 cut(s) 33
AoxI GGCC 1 cut(s) 218
ApeKI GCWGC 1 cut(s) 495
ApoI RAATTY 2 cut(s) 41, 570
Asp700I GAANNNNTTC 1 cut(s) 301
AspLEI GCGC 1 cut(s) 597
AspS9I GGNCC 1 cut(s) 163
AvaII GGWCC 1 cut(s) 163
AxyI CCTNAGG 1 cut(s) 120
BbsI GAAGAC 1 cut(s) 480
BbvI GCAGC 1 cut(s) 482
BccI CCATC 2 cut(s) 92, 307
BciT130I CCWGG 1 cut(s) 179
BclI TGATCA 1 cut(s) 526
BcoDI GTCTC 1 cut(s) 547
BfaI CTAG 1 cut(s) 425
BfmI CTRYAG 1 cut(s) 308
BfrI CTTAAG 1 cut(s) 287
BisI GCNGC 3 cut(s) 343, 487, 496
BlsI GCNGC 3 cut(s) 344, 488, 497
Bme1390I CCNGG 1 cut(s) 179
Bme18I GGWCC 1 cut(s) 163
BmgT120I GGNCC 1 cut(s) 163
BmiI GGNNCC 1 cut(s) 164
BmrFI CCNGG 1 cut(s) 179
BpiI GAAGAC 1 cut(s) 480
Bpu10I CCTNAGC 1 cut(s) 327
BpuEI CTTGAG 1 cut(s) 122
BsaJI CCNNGG 2 cut(s) 178, 415
BsaXI ACNNNNNCTCC 2 cut(s) 424, 454
Bsc4I CCNNNNNNNGG 1 cut(s) 159
Bse21I CCTNAGG 1 cut(s) 120
BseBI CCWGG 1 cut(s) 179
BseDI CCNNGG 2 cut(s) 178, 415
BseGI GGATG 2 cut(s) 385, 477
BseLI CCNNNNNNNGG 1 cut(s) 159
BseMII CTCAG 1 cut(s) 111
BseXI GCAGC 1 cut(s) 482
Bsh1236I CGCG 3 cut(s) 207, 489, 595
BshFI GGCC 1 cut(s) 220
BslI CCNNNNNNNGG 1 cut(s) 159
BsmAI GTCTC 1 cut(s) 547
BsmI GAATGC 2 cut(s) 405, 589
BsnI GGCC 1 cut(s) 220
Bsp143I GATC 4 cut(s) 25, 193, 350, 526
BspACI CCGC 7 cut(s) 160, 205, 230, 343, 487, 493, 593
BspANI GGCC 1 cut(s) 220
BspCNI CTCAG 1 cut(s) 112
BspFNI CGCG 3 cut(s) 207, 489, 595
BspLI GGNNCC 1 cut(s) 164
BspPI GGATC 1 cut(s) 33
BspTI CTTAAG 1 cut(s) 287
BssECI CCNNGG 2 cut(s) 178, 415
BssMI GATC 4 cut(s) 25, 193, 350, 526
BssT1I CCWWGG 1 cut(s) 415
Bst2UI CCWGG 1 cut(s) 179
Bst4CI ACNGT 3 cut(s) 256, 337, 613
BstAFI CTTAAG 1 cut(s) 287
BstC8I GCNNGC 3 cut(s) 175, 589, 593
BstDEI CTNAG 5 cut(s) 120, 327, 347, 370, 600
BstF5I GGATG 2 cut(s) 385, 477
BstFNI CGCG 3 cut(s) 207, 489, 595
BstHHI GCGC 1 cut(s) 597
BstKTI GATC 4 cut(s) 28, 196, 353, 529
BstMAI GTCTC 1 cut(s) 547
BstMBI GATC 4 cut(s) 25, 193, 350, 526
BstMWI GCNNNNNNNGC 2 cut(s) 492, 495
BstNI CCWGG 1 cut(s) 179
BstNSI RCATGY 1 cut(s) 591
BstSCI CCNGG 1 cut(s) 177
BstSFI CTRYAG 1 cut(s) 308
BstUI CGCG 3 cut(s) 207, 489, 595
BstV1I GCAGC 1 cut(s) 482
BstV2I GAAGAC 1 cut(s) 480
Bsu36I CCTNAGG 1 cut(s) 120
BsuRI GGCC 1 cut(s) 220
BtsCI GGATG 2 cut(s) 385, 477
Cac8I GCNNGC 3 cut(s) 175, 589, 593
CfoI GCGC 1 cut(s) 597
Cfr13I GGNCC 1 cut(s) 163
CseI GACGC 1 cut(s) 478
Csp6I GTAC 2 cut(s) 91, 338
CviAII CATG 1 cut(s) 588
CviJI RGCY 9 cut(s) 5, 136, 220, 326, 369, 424, 486, 532, 566
CviKI_1 RGCY 9 cut(s) 5, 136, 220, 326, 369, 424, 486, 532, 566
CviQI GTAC 2 cut(s) 91, 338
DdeI CTNAG 5 cut(s) 120, 327, 347, 370, 600
DpnI GATC 4 cut(s) 27, 195, 352, 528
DpnII GATC 4 cut(s) 25, 193, 350, 526
DrdI GACNNNNNNGTC 1 cut(s) 148
DseDI GACNNNNNNGTC 1 cut(s) 148
EciI GGCGGA 1 cut(s) 219
Eco130I CCWWGG 1 cut(s) 415
Eco47I GGWCC 1 cut(s) 163
Eco57I CTGAAG 3 cut(s) 152, 430, 492
Eco81I CCTNAGG 1 cut(s) 120
EcoO109I RGGNCCY 1 cut(s) 163
EcoRII CCWGG 1 cut(s) 177
EcoT14I CCWWGG 1 cut(s) 415
EcoT22I ATGCAT 2 cut(s) 563, 589
ErhI CCWWGG 1 cut(s) 415
FaeI CATG 1 cut(s) 591
FaiI YATR 8 cut(s) 65, 190, 192, 246, 264, 266, 563, 589
FatI CATG 1 cut(s) 587
FauI CCCGC 2 cut(s) 153, 600
FauNDI CATATG 1 cut(s) 190
FbaI TGATCA 1 cut(s) 526
Fnu4HI GCNGC 3 cut(s) 343, 487, 496
FokI GGATG 2 cut(s) 392, 464
Fsp4HI GCNGC 3 cut(s) 343, 487, 496
FspBI CTAG 1 cut(s) 425
GlaI GCGC 1 cut(s) 596
GluI GCNGC 3 cut(s) 343, 487, 496
HaeIII GGCC 1 cut(s) 220
HgaI GACGC 1 cut(s) 478
HhaI GCGC 1 cut(s) 597
Hin1II CATG 1 cut(s) 591
Hin6I GCGC 1 cut(s) 595
HinP1I GCGC 1 cut(s) 595
HincII GTYRAC 1 cut(s) 284
HindII GTYRAC 1 cut(s) 284
HinfI GANTC 2 cut(s) 297, 320
Hpy166II GTNNAC 1 cut(s) 284
Hpy188III TCNNGA 1 cut(s) 139
Hpy8I GTNNAC 1 cut(s) 284
Hpy99I CGWCG 1 cut(s) 98
HpyAV CCTTC 4 cut(s) 79, 176, 234, 454
HpyCH4III ACNGT 3 cut(s) 256, 337, 613
HpyCH4IV ACGT 1 cut(s) 93
HpyCH4V TGCA 3 cut(s) 511, 561, 587
HpyF10VI GCNNNNNNNGC 2 cut(s) 492, 495
HpyF3I CTNAG 5 cut(s) 120, 327, 347, 370, 600
HpySE526I ACGT 1 cut(s) 93
Hsp92II CATG 1 cut(s) 591
HspAI GCGC 1 cut(s) 595
Ksp22I TGATCA 1 cut(s) 526
Kzo9I GATC 4 cut(s) 25, 193, 350, 526
LpnPI CCDG 9 cut(s) 132, 146, 155, 164, 170, 191, 379, 433, 497
Lsp1109I GCAGC 1 cut(s) 482
MaeI CTAG 1 cut(s) 425
MaeII ACGT 1 cut(s) 93
MalI GATC 4 cut(s) 27, 195, 352, 528
MboI GATC 4 cut(s) 25, 193, 350, 526
MboII GAAGA 1 cut(s) 485
MfeI CAATTG 1 cut(s) 212
MluCI AATT 4 cut(s) 41, 145, 212, 570
MmeI TCCRAC 1 cut(s) 85
MnlI CCTC 9 cut(s) 9, 70, 115, 231, 252, 370, 447, 448, 509
Mph1103I ATGCAT 2 cut(s) 563, 589
MroXI GAANNNNTTC 1 cut(s) 301
MseI TTAA 2 cut(s) 288, 462
MspA1I CMGCKG 2 cut(s) 160, 495
MspCI CTTAAG 1 cut(s) 287
MspR9I CCNGG 1 cut(s) 179
MunI CAATTG 1 cut(s) 212
Mva1269I GAATGC 2 cut(s) 405, 589
MvaI CCWGG 1 cut(s) 179
MvnI CGCG 3 cut(s) 207, 489, 595
MwoI GCNNNNNNNGC 2 cut(s) 492, 495
NdeI CATATG 1 cut(s) 190
NdeII GATC 4 cut(s) 25, 193, 350, 526
NlaIII CATG 1 cut(s) 591
NlaIV GGNNCC 1 cut(s) 164
NsiI ATGCAT 2 cut(s) 563, 589
NspI RCATGY 1 cut(s) 591
PaeI GCATGC 1 cut(s) 591
PctI GAATGC 2 cut(s) 405, 589
PdmI GAANNNNTTC 1 cut(s) 301
PfeI GAWTC 2 cut(s) 297, 320
PkrI GCNGC 3 cut(s) 344, 488, 497
PpuMI RGGWCCY 1 cut(s) 163
Psp5II RGGWCCY 1 cut(s) 163
Psp6I CCWGG 1 cut(s) 177
PspGI CCWGG 1 cut(s) 177
PspN4I GGNNCC 1 cut(s) 164
PspPI GGNCC 1 cut(s) 163
PspPPI RGGWCCY 1 cut(s) 163
RsaI GTAC 2 cut(s) 92, 339
RsaNI GTAC 2 cut(s) 91, 338
SaqAI TTAA 2 cut(s) 288, 462
SatI GCNGC 3 cut(s) 343, 487, 496
Sau3AI GATC 4 cut(s) 25, 193, 350, 526
Sau96I GGNCC 1 cut(s) 163
ScrFI CCNGG 1 cut(s) 179
SetI ASST 9 cut(s) 81, 96, 121, 126, 138, 263, 371, 458, 568
SfcI CTRYAG 1 cut(s) 308
SinI GGWCC 1 cut(s) 163
SmlI CTYRAG 2 cut(s) 137, 287
SmoI CTYRAG 2 cut(s) 137, 287
SphI GCATGC 1 cut(s) 591
Sse9I AATT 4 cut(s) 41, 145, 212, 570
SsiI CCGC 7 cut(s) 160, 205, 230, 343, 487, 493, 593
SspMI CTAG 1 cut(s) 425
StyD4I CCNGG 1 cut(s) 177
StyI CCWWGG 1 cut(s) 415
TaaI ACNGT 3 cut(s) 256, 337, 613
TaiI ACGT 1 cut(s) 96
TaqI TCGA 3 cut(s) 14, 96, 353
TasI AATT 4 cut(s) 41, 145, 212, 570
TauI GCSGC 2 cut(s) 345, 489
TfiI GAWTC 2 cut(s) 297, 320
Tru1I TTAA 2 cut(s) 288, 462
Tru9I TTAA 2 cut(s) 288, 462
TseI GCWGC 1 cut(s) 495
TspDTI ATGAA 1 cut(s) 396
TspGWI ACGGA 1 cut(s) 491
Vha464I CTTAAG 1 cut(s) 287
VpaK11BI GGWCC 1 cut(s) 163
XapI RAATTY 2 cut(s) 41, 570
XceI RCATGY 1 cut(s) 591
XmnI GAANNNNTTC 1 cut(s) 301
XspI CTAG 1 cut(s) 425
Zsp2I ATGCAT 2 cut(s) 563, 589
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.