Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8241263.1

Orthogroup ID

OG0006425

Physical Location & Seq

Genomic Coordinates Reverse (-)

48 .. 743

Gene Structure 696 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8241263.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 696 bp

atggtagattcggctaaggaaacggtacgccgccttagatcgaaaggatattccagcttagatgaggatgaagcaatcactctaaaggacagcattcacttccttggtaggctagaaagcaccccctctccctttagggagaggtttcttaactttgctgaagacgttccaagccgtgttcgctgcctccgtcaaatgcaggaaacattgattgatcagccaaatcttgtagagcaagagagacaatgcatagctgaaattcagaacagaaatctgcaagagttaaattaccctaatctgcagagtgttaatcctgaggttctgacagcgaagtgttccaaaaccaacgagaatattaaattacccttagctgacaatggaggagaaaggcagccagagttcgtgatatttgatgatgatgatgtagaaatctgcaaaaaacggaaaagaagagagatgaaggacttggaagaagcttatagtatacagacccaattggatgcaaaagttaatgatattgaggctcttaatatcaagttggaagagatcaatgctggaagagaaaaaaataaaagtgaggatcaggaagacttgacagctttacgtgtgcatgagaaaaagataaacaacagattcaagaagatggagttggctaggaaagctcaatcagaatttgacgaatttgatcgcctgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

231

Amino Acids

27.0

Weight (kDa)

5.14

Isoelectric Point (pI)

62.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006425)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0455531 RchiOBHm_Chr3g0455581 RchiOBHm_Chr5g0002701 RchiOBHm_Chr6g0248951
rosa_laevigata	RLG00000025338
rosa_multiflora	Rmu_co8241263.1_g000001 Rmu_sc0006994.1_g000001 Rmu_sc0009084.1_g000018
rosa_roxburghii	Rroxscaffold_1G00073180 Rroxscaffold_6G00423550 Rroxscaffold_6G00424060 Rroxscaffold_6G00424070
rosa_rugosa	Rorug03G0008400 Rorug03G0008400 Rorug04G0398400
rosa_samantha	Rh3DG071500 Rh3DG071600 Rh4CG231700 Rh5AG021700 Rh5BG024600 Rh5BG366200 Rh5CG024000 Rh5DG023000 Rh6AG051900
rosa_wichuraiana	Rw3G005400 Rw3G005430 Rw5G002020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	484
AciI	CCGC	1 cut(s)	31
AclWI	GGATC	1 cut(s)	588
AcsI	RAATTY	3 cut(s)	258, 671, 680
AcuI	CTGAAG	1 cut(s)	180
AfaI	GTAC	1 cut(s)	27
AflIII	ACRYGT	1 cut(s)	604
AgsI	TTSAA	1 cut(s)	637
AjuI	GAANNNNNNNTTGG	2 cut(s)	632, 664
AluBI	AGCT	6 cut(s)	57, 254, 371, 476, 599, 662
AluI	AGCT	6 cut(s)	57, 254, 371, 476, 599, 662
Alw26I	GTCTC	1 cut(s)	235
AlwI	GGATC	1 cut(s)	588
ApeKI	GCWGC	2 cut(s)	183, 391
ApoI	RAATTY	3 cut(s)	258, 671, 680
Asp700I	GAANNNNTTC	1 cut(s)	165
AxyI	CCTNAGG	1 cut(s)	315
BbsI	GAAGAC	2 cut(s)	168, 594
BbvI	GCAGC	2 cut(s)	170, 403
BccI	CCATC	1 cut(s)	637
BceAI	ACGGC	1 cut(s)	159
BclI	TGATCA	1 cut(s)	214
BcoDI	GTCTC	1 cut(s)	235
BfaI	CTAG	2 cut(s)	113, 654
BfmI	CTRYAG	1 cut(s)	299
BisI	GCNGC	3 cut(s)	31, 184, 392
BlsI	GCNGC	3 cut(s)	32, 185, 393
BmsI	GCATC	1 cut(s)	490
BpiI	GAAGAC	2 cut(s)	168, 594
Bpu10I	CCTNAGC	2 cut(s)	15, 367
BsaAI	YACGTR	1 cut(s)	605
BsaJI	CCNNGG	1 cut(s)	103
BsaXI	ACNNNNNCTCC	2 cut(s)	112, 142
Bse21I	CCTNAGG	1 cut(s)	315
BseDI	CCNNGG	1 cut(s)	103
BseGI	GGATG	2 cut(s)	73, 505
BseMII	CTCAG	1 cut(s)	306
BseRI	GAGGAG	1 cut(s)	396
BseXI	GCAGC	2 cut(s)	170, 403
BsmAI	GTCTC	1 cut(s)	235
BsmI	GAATGC	1 cut(s)	93
Bsp143I	GATC	5 cut(s)	38, 214, 546, 580, 685
BspACI	CCGC	1 cut(s)	31
BspCNI	CTCAG	1 cut(s)	307
BspMAI	CTGCAG	1 cut(s)	303
BspPI	GGATC	1 cut(s)	588
BssECI	CCNNGG	1 cut(s)	103
BssMI	GATC	5 cut(s)	38, 214, 546, 580, 685
BssNAI	GTATAC	1 cut(s)	485
BssT1I	CCWWGG	1 cut(s)	103
Bst1107I	GTATAC	1 cut(s)	485
Bst4CI	ACNGT	1 cut(s)	25
Bst6I	CTCTTC	3 cut(s)	445, 537, 553
BstBAI	YACGTR	1 cut(s)	605
BstDEI	CTNAG	5 cut(s)	15, 35, 58, 315, 367
BstF5I	GGATG	2 cut(s)	73, 505
BstKTI	GATC	5 cut(s)	41, 217, 549, 583, 688
BstMAI	GTCTC	1 cut(s)	235
BstMBI	GATC	5 cut(s)	38, 214, 546, 580, 685
BstMWI	GCNNNNNNNGC	2 cut(s)	180, 659
BstSFI	CTRYAG	1 cut(s)	299
BstV1I	GCAGC	2 cut(s)	170, 403
BstV2I	GAAGAC	2 cut(s)	168, 594
BstZ17I	GTATAC	1 cut(s)	485
Bsu36I	CCTNAGG	1 cut(s)	315
BtsCI	GGATG	2 cut(s)	73, 505
Csp6I	GTAC	1 cut(s)	26
CviAII	CATG	1 cut(s)	611
CviQI	GTAC	1 cut(s)	26
DdeI	CTNAG	5 cut(s)	15, 35, 58, 315, 367
DpnI	GATC	5 cut(s)	40, 216, 548, 582, 687
DpnII	GATC	5 cut(s)	38, 214, 546, 580, 685
Eam1104I	CTCTTC	3 cut(s)	445, 537, 553
EarI	CTCTTC	3 cut(s)	445, 537, 553
Eco130I	CCWWGG	1 cut(s)	103
Eco57I	CTGAAG	1 cut(s)	180
Eco81I	CCTNAGG	1 cut(s)	315
EcoT14I	CCWWGG	1 cut(s)	103
EcoT22I	ATGCAT	1 cut(s)	251
ErhI	CCWWGG	1 cut(s)	103
FaeI	CATG	1 cut(s)	614
FaiI	YATR	4 cut(s)	251, 480, 485, 612
FatI	CATG	1 cut(s)	610
FbaI	TGATCA	1 cut(s)	214
FblI	GTMKAC	1 cut(s)	484
Fnu4HI	GCNGC	3 cut(s)	31, 184, 392
FokI	GGATG	2 cut(s)	80, 512
Fsp4HI	GCNGC	3 cut(s)	31, 184, 392
FspBI	CTAG	2 cut(s)	113, 654
GluI	GCNGC	3 cut(s)	31, 184, 392
Hin1II	CATG	1 cut(s)	614
HindIII	AAGCTT	1 cut(s)	474
HinfI	GANTC	2 cut(s)	8, 633
Hpy166II	GTNNAC	1 cut(s)	485
Hpy188I	TCNGA	3 cut(s)	264, 324, 670
Hpy188III	TCNNGA	4 cut(s)	314, 403, 584, 637
Hpy8I	GTNNAC	1 cut(s)	485
HpyAV	CCTTC	1 cut(s)	454
HpyCH4III	ACNGT	1 cut(s)	25
HpyCH4IV	ACGT	2 cut(s)	165, 604
HpyCH4V	TGCA	7 cut(s)	199, 249, 277, 301, 435, 503, 610
HpyF10VI	GCNNNNNNNGC	2 cut(s)	180, 659
HpyF3I	CTNAG	5 cut(s)	15, 35, 58, 315, 367
HpySE526I	ACGT	2 cut(s)	165, 604
Hsp92II	CATG	1 cut(s)	614
Ksp22I	TGATCA	1 cut(s)	214
Kzo9I	GATC	5 cut(s)	38, 214, 546, 580, 685
LpnPI	CCDG	6 cut(s)	67, 185, 327, 408, 540, 569
Lsp1109I	GCAGC	2 cut(s)	170, 403
LweI	GCATC	1 cut(s)	490
MaeI	CTAG	2 cut(s)	113, 654
MaeII	ACGT	2 cut(s)	165, 604
MalI	GATC	5 cut(s)	40, 216, 548, 582, 687
MboI	GATC	5 cut(s)	38, 214, 546, 580, 685
MboII	GAAGA	7 cut(s)	173, 462, 482, 554, 570, 599, 652
MfeI	CAATTG	1 cut(s)	494
MluCI	AATT	6 cut(s)	258, 286, 359, 494, 671, 680
MmeI	TCCRAC	1 cut(s)	519
MnlI	CCTC	8 cut(s)	58, 135, 136, 197, 310, 374, 514, 571
Mph1103I	ATGCAT	1 cut(s)	251
MroXI	GAANNNNTTC	1 cut(s)	165
MseI	TTAA	6 cut(s)	150, 284, 309, 357, 510, 528
MunI	CAATTG	1 cut(s)	494
Mva1269I	GAATGC	1 cut(s)	93
MwoI	GCNNNNNNNGC	2 cut(s)	180, 659
NdeII	GATC	5 cut(s)	38, 214, 546, 580, 685
NlaIII	CATG	1 cut(s)	614
NsiI	ATGCAT	1 cut(s)	251
PcsI	WCGNNNNNNNCGW	1 cut(s)	187
PctI	GAATGC	1 cut(s)	93
PdmI	GAANNNNTTC	1 cut(s)	165
PfeI	GAWTC	2 cut(s)	8, 633
PkrI	GCNGC	3 cut(s)	32, 185, 393
Ppu21I	YACGTR	1 cut(s)	605
PstI	CTGCAG	1 cut(s)	303
RsaI	GTAC	1 cut(s)	27
RsaNI	GTAC	1 cut(s)	26
SaqAI	TTAA	6 cut(s)	150, 284, 309, 357, 510, 528
SatI	GCNGC	3 cut(s)	31, 184, 392
Sau3AI	GATC	5 cut(s)	38, 214, 546, 580, 685
SfaNI	GCATC	1 cut(s)	490
SfcI	CTRYAG	1 cut(s)	299
Sse9I	AATT	6 cut(s)	258, 286, 359, 494, 671, 680
SsiI	CCGC	1 cut(s)	31
SspI	AATATT	1 cut(s)	355
SspMI	CTAG	2 cut(s)	113, 654
StyI	CCWWGG	1 cut(s)	103
TaaI	ACNGT	1 cut(s)	25
TaiI	ACGT	2 cut(s)	168, 607
TaqI	TCGA	1 cut(s)	41
TasI	AATT	6 cut(s)	258, 286, 359, 494, 671, 680
TauI	GCSGC	1 cut(s)	33
TfiI	GAWTC	2 cut(s)	8, 633
Tru1I	TTAA	6 cut(s)	150, 284, 309, 357, 510, 528
Tru9I	TTAA	6 cut(s)	150, 284, 309, 357, 510, 528
TseI	GCWGC	2 cut(s)	183, 391
TspDTI	ATGAA	2 cut(s)	84, 473
TspGWI	ACGGA	2 cut(s)	179, 457
XapI	RAATTY	3 cut(s)	258, 671, 680
XmiI	GTMKAC	1 cut(s)	484
XmnI	GAANNNNTTC	1 cut(s)	165
XspI	CTAG	2 cut(s)	113, 654
Zsp2I	ATGCAT	1 cut(s)	251

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.