Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009084.1

Orthogroup ID

OG0006425

Physical Location & Seq

Genomic Coordinates Reverse (-)

77785 .. 78795

Gene Structure 1011 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009084.1_g000018.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

atgattttgattttgctgtttgcaagtattgaatttcaacaagttgagcagagtatgattgaccaagaggtgttgagggagcgcgtcgatggagttggaaacccaacacctgaggtagaaaaccagctcaagaccaatttgtcctaccagcgggtccttcaggcacgccagggagtgccttatggtggtctaatccgcgttcaattgtggcctcctcctccgccccgtgatgattatagggcaactgtgagaagagagatgaaggacttggaagaagcttatagtatacagacccaattggatgcaaaagttaatgatattgaggctcttaatatcaagttggaagagatcaatgctggaagagaaaaaaataaaagtgaggatcaggaagacttgacagctttacgtgtgcatgagaaaaagataaacaacagattcaagaagatggagttggctaggaaagctcaatcagaatttgacgaatttgatcgcctgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

165

Amino Acids

19.27

Weight (kDa)

5.13

Isoelectric Point (pI)

52.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006425)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0455531 RchiOBHm_Chr3g0455581 RchiOBHm_Chr5g0002701 RchiOBHm_Chr6g0248951
rosa_laevigata	RLG00000025338
rosa_multiflora	Rmu_co8241263.1_g000001 Rmu_sc0006994.1_g000001 Rmu_sc0009084.1_g000018
rosa_roxburghii	Rroxscaffold_1G00073180 Rroxscaffold_6G00423550 Rroxscaffold_6G00424060 Rroxscaffold_6G00424070
rosa_rugosa	Rorug03G0008400 Rorug03G0008400 Rorug04G0398400
rosa_samantha	Rh3DG071500 Rh3DG071600 Rh4CG231700 Rh5AG021700 Rh5BG024600 Rh5BG366200 Rh5CG024000 Rh5DG023000 Rh6AG051900
rosa_wichuraiana	Rw3G005400 Rw3G005430 Rw5G002020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	139
AccI	GTMKAC	1 cut(s)	286
AccII	CGCG	2 cut(s)	84, 198
AciI	CCGC	3 cut(s)	151, 196, 221
AclWI	GGATC	1 cut(s)	390
AcsI	RAATTY	3 cut(s)	32, 473, 482
AcuI	CTGAAG	1 cut(s)	143
AfiI	CCNNNNNNNGG	2 cut(s)	150, 185
AflIII	ACRYGT	1 cut(s)	406
AgsI	TTSAA	4 cut(s)	32, 38, 203, 439
AjnI	CCWGG	1 cut(s)	168
AjuI	GAANNNNNNNTTGG	2 cut(s)	434, 466
AluBI	AGCT	4 cut(s)	127, 278, 401, 464
AluI	AGCT	4 cut(s)	127, 278, 401, 464
AlwI	GGATC	1 cut(s)	390
AoxI	GGCC	1 cut(s)	209
ApoI	RAATTY	3 cut(s)	32, 473, 482
AspLEI	GCGC	1 cut(s)	84
AspS9I	GGNCC	1 cut(s)	154
AvaII	GGWCC	1 cut(s)	154
AxyI	CCTNAGG	1 cut(s)	111
BbsI	GAAGAC	1 cut(s)	396
BccI	CCATC	2 cut(s)	83, 439
BciT130I	CCWGG	1 cut(s)	170
BfaI	CTAG	1 cut(s)	456
Bme1390I	CCNGG	1 cut(s)	170
Bme18I	GGWCC	1 cut(s)	154
BmgT120I	GGNCC	1 cut(s)	154
BmiI	GGNNCC	1 cut(s)	155
BmrFI	CCNGG	1 cut(s)	170
BmsI	GCATC	1 cut(s)	292
BpiI	GAAGAC	1 cut(s)	396
BpuEI	CTTGAG	1 cut(s)	113
BsaAI	YACGTR	1 cut(s)	407
BsaJI	CCNNGG	1 cut(s)	169
Bsc4I	CCNNNNNNNGG	2 cut(s)	150, 185
Bse21I	CCTNAGG	1 cut(s)	111
BseBI	CCWGG	1 cut(s)	170
BseDI	CCNNGG	1 cut(s)	169
BseGI	GGATG	1 cut(s)	307
BseLI	CCNNNNNNNGG	2 cut(s)	150, 185
BseMII	CTCAG	1 cut(s)	102
BseRI	GAGGAG	2 cut(s)	204, 207
Bsh1236I	CGCG	2 cut(s)	84, 198
BshFI	GGCC	1 cut(s)	211
BslI	CCNNNNNNNGG	2 cut(s)	150, 185
BsnI	GGCC	1 cut(s)	211
Bsp143I	GATC	3 cut(s)	348, 382, 487
BspACI	CCGC	3 cut(s)	151, 196, 221
BspANI	GGCC	1 cut(s)	211
BspCNI	CTCAG	1 cut(s)	103
BspFNI	CGCG	2 cut(s)	84, 198
BspLI	GGNNCC	1 cut(s)	155
BspPI	GGATC	1 cut(s)	390
BssECI	CCNNGG	1 cut(s)	169
BssMI	GATC	3 cut(s)	348, 382, 487
BssNAI	GTATAC	1 cut(s)	287
Bst1107I	GTATAC	1 cut(s)	287
Bst2UI	CCWGG	1 cut(s)	170
Bst4CI	ACNGT	1 cut(s)	247
Bst6I	CTCTTC	3 cut(s)	247, 339, 355
BstBAI	YACGTR	1 cut(s)	407
BstC8I	GCNNGC	1 cut(s)	166
BstDEI	CTNAG	1 cut(s)	111
BstF5I	GGATG	1 cut(s)	307
BstFNI	CGCG	2 cut(s)	84, 198
BstHHI	GCGC	1 cut(s)	84
BstKTI	GATC	3 cut(s)	351, 385, 490
BstMBI	GATC	3 cut(s)	348, 382, 487
BstMWI	GCNNNNNNNGC	1 cut(s)	461
BstNI	CCWGG	1 cut(s)	170
BstSCI	CCNGG	1 cut(s)	168
BstUI	CGCG	2 cut(s)	84, 198
BstV2I	GAAGAC	1 cut(s)	396
BstZ17I	GTATAC	1 cut(s)	287
Bsu36I	CCTNAGG	1 cut(s)	111
BsuRI	GGCC	1 cut(s)	211
BtsCI	GGATG	1 cut(s)	307
Cac8I	GCNNGC	1 cut(s)	166
CfoI	GCGC	1 cut(s)	84
Cfr13I	GGNCC	1 cut(s)	154
CseI	GACGC	1 cut(s)	73
CviAII	CATG	1 cut(s)	413
CviJI	RGCY	7 cut(s)	127, 211, 278, 326, 401, 455, 464
CviKI_1	RGCY	7 cut(s)	127, 211, 278, 326, 401, 455, 464
DdeI	CTNAG	1 cut(s)	111
DpnI	GATC	3 cut(s)	350, 384, 489
DpnII	GATC	3 cut(s)	348, 382, 487
DrdI	GACNNNNNNGTC	1 cut(s)	139
DseDI	GACNNNNNNGTC	1 cut(s)	139
Eam1104I	CTCTTC	3 cut(s)	247, 339, 355
EarI	CTCTTC	3 cut(s)	247, 339, 355
EciI	GGCGGA	1 cut(s)	210
Eco47I	GGWCC	1 cut(s)	154
Eco57I	CTGAAG	1 cut(s)	143
Eco81I	CCTNAGG	1 cut(s)	111
EcoO109I	RGGNCCY	1 cut(s)	154
EcoRII	CCWGG	1 cut(s)	168
FaeI	CATG	1 cut(s)	416
FaiI	YATR	6 cut(s)	56, 183, 237, 282, 287, 414
FatI	CATG	1 cut(s)	412
FauI	CCCGC	1 cut(s)	144
FblI	GTMKAC	1 cut(s)	286
FokI	GGATG	1 cut(s)	314
FspBI	CTAG	1 cut(s)	456
GlaI	GCGC	1 cut(s)	83
HaeIII	GGCC	1 cut(s)	211
HgaI	GACGC	1 cut(s)	73
HhaI	GCGC	1 cut(s)	84
Hin1II	CATG	1 cut(s)	416
Hin6I	GCGC	1 cut(s)	82
HinP1I	GCGC	1 cut(s)	82
HindIII	AAGCTT	1 cut(s)	276
HinfI	GANTC	1 cut(s)	435
Hpy166II	GTNNAC	1 cut(s)	287
Hpy188I	TCNGA	1 cut(s)	472
Hpy188III	TCNNGA	3 cut(s)	130, 386, 439
Hpy8I	GTNNAC	1 cut(s)	287
Hpy99I	CGWCG	1 cut(s)	89
HpyAV	CCTTC	2 cut(s)	167, 256
HpyCH4III	ACNGT	1 cut(s)	247
HpyCH4IV	ACGT	1 cut(s)	406
HpyCH4V	TGCA	3 cut(s)	23, 305, 412
HpyF10VI	GCNNNNNNNGC	1 cut(s)	461
HpyF3I	CTNAG	1 cut(s)	111
HpySE526I	ACGT	1 cut(s)	406
Hsp92II	CATG	1 cut(s)	416
HspAI	GCGC	1 cut(s)	82
Kzo9I	GATC	3 cut(s)	348, 382, 487
LmnI	GCTCC	1 cut(s)	79
LpnPI	CCDG	8 cut(s)	123, 137, 146, 155, 161, 182, 342, 371
LweI	GCATC	1 cut(s)	292
MaeI	CTAG	1 cut(s)	456
MaeII	ACGT	1 cut(s)	406
MalI	GATC	3 cut(s)	350, 384, 489
MboI	GATC	3 cut(s)	348, 382, 487
MboII	GAAGA	6 cut(s)	264, 284, 356, 372, 401, 454
MfeI	CAATTG	2 cut(s)	203, 296
MluCI	AATT	6 cut(s)	32, 136, 203, 296, 473, 482
MmeI	TCCRAC	2 cut(s)	76, 321
MnlI	CCTC	8 cut(s)	61, 69, 106, 222, 225, 228, 316, 373
MseI	TTAA	2 cut(s)	312, 330
MspA1I	CMGCKG	1 cut(s)	151
MspR9I	CCNGG	1 cut(s)	170
MunI	CAATTG	2 cut(s)	203, 296
MvaI	CCWGG	1 cut(s)	170
MvnI	CGCG	2 cut(s)	84, 198
MwoI	GCNNNNNNNGC	1 cut(s)	461
NdeII	GATC	3 cut(s)	348, 382, 487
NlaIII	CATG	1 cut(s)	416
NlaIV	GGNNCC	1 cut(s)	155
PfeI	GAWTC	1 cut(s)	435
Ppu21I	YACGTR	1 cut(s)	407
PpuMI	RGGWCCY	1 cut(s)	154
Psp5II	RGGWCCY	1 cut(s)	154
Psp6I	CCWGG	1 cut(s)	168
PspGI	CCWGG	1 cut(s)	168
PspN4I	GGNNCC	1 cut(s)	155
PspPI	GGNCC	1 cut(s)	154
PspPPI	RGGWCCY	1 cut(s)	154
SaqAI	TTAA	2 cut(s)	312, 330
Sau3AI	GATC	3 cut(s)	348, 382, 487
Sau96I	GGNCC	1 cut(s)	154
ScrFI	CCNGG	1 cut(s)	170
SetI	ASST	8 cut(s)	72, 112, 117, 129, 280, 403, 409, 466
SfaNI	GCATC	1 cut(s)	292
SinI	GGWCC	1 cut(s)	154
SmlI	CTYRAG	1 cut(s)	128
SmoI	CTYRAG	1 cut(s)	128
Sse9I	AATT	6 cut(s)	32, 136, 203, 296, 473, 482
SsiI	CCGC	3 cut(s)	151, 196, 221
SspMI	CTAG	1 cut(s)	456
StyD4I	CCNGG	1 cut(s)	168
TaaI	ACNGT	1 cut(s)	247
TaiI	ACGT	1 cut(s)	409
TaqI	TCGA	1 cut(s)	87
TasI	AATT	6 cut(s)	32, 136, 203, 296, 473, 482
TfiI	GAWTC	1 cut(s)	435
Tru1I	TTAA	2 cut(s)	312, 330
Tru9I	TTAA	2 cut(s)	312, 330
TspDTI	ATGAA	1 cut(s)	275
VpaK11BI	GGWCC	1 cut(s)	154
XapI	RAATTY	3 cut(s)	32, 473, 482
XmiI	GTMKAC	1 cut(s)	286
XspI	CTAG	1 cut(s)	456

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.