Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0006425

Physical Location & Seq

Genomic Coordinates Forward (+)

44644713 .. 44652520

Gene Structure 7808 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00423550.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 879 bp

ATGAGGAATTTGAGGTCTCAGAATTGGGCGAGGCAGTACTTGGCACAACAGTTCTATCTGAGAGTATACTCTCCTGCTCATTCATGGAGAGATGTATTACCGATTCCAAGAAATGCTATTCTTGTGGCAGGGCAAGAGGTCACTGATAACTTCCTTCACAAGGTCACTAGCGATCTAGAAACTCCCTTACTTTGCTCCCAGACTTTTACAAGCAAGCAAAGTATGATTGACAAAGAGGTGTTGGAGGAGTGCGTTGGTGGAGTTGGAAACCGAACACCTGAGGTAGAAAATATAGTCGGATCCTCTACCCATTATTCTCCCACCTTGATAAACCAGCTCAAGACCGATTTGTCCTATCTGCGGGCATGCCAGGGAGTGCCAAATGGTCGTCTAATCCGCATTCAATCGTGGTCTCCTCCTCCGCCCCGTGATGATTATAGGGGGAGGCTTTCAAAGGAGAATTGGAAAAGGAAACTTGGGCTGAGTATTCTACACATATATAGAGGCTCTGAACACGTTAAAAAACACCACCCTACAGCTCCATCTTCTGCCAAAAAACCTAGCACACAAAGTCTTGAAATTCCCAAGTCCTCCAAGAGCAAAAACCGTGCACACCATCATCCATCTTCATCAAGCCTTGCCGTGTACCATCTTGAGGGGAGTACTTGCGTCCAAGGCTGCCTGAAAGAAACGGTACTCCGCCTTAGATCGAAAGGATATTCCAGCTTAGATGAGGATGAAGCAATCACTCTAAAGGACAACATTCACTTCCTTGGTAGGCTAGAAAGCACCCCCTCTTTCTTTAGGGAGAGGTTTCTTAAGTTTGCTGAAGACATTCCAAGCCGTGTCCGCTGCCTTCGTCAAATGCGGAAGCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cu-oxidase Cu-oxidase_2 Cu-oxidase_3

Protein Analysis

292

Amino Acids

33.37

Weight (kDa)

9.73

Isoelectric Point (pI)

52.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006425)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0455531 RchiOBHm_Chr3g0455581 RchiOBHm_Chr5g0002701 RchiOBHm_Chr6g0248951
rosa_laevigata	RLG00000025338
rosa_multiflora	Rmu_co8241263.1_g000001 Rmu_sc0006994.1_g000001 Rmu_sc0009084.1_g000018
rosa_roxburghii	Rroxscaffold_1G00073180 Rroxscaffold_6G00423550 Rroxscaffold_6G00424060 Rroxscaffold_6G00424070
rosa_rugosa	Rorug03G0008400 Rorug03G0008400 Rorug04G0398400
rosa_samantha	Rh3DG071500 Rh3DG071600 Rh4CG231700 Rh5AG021700 Rh5BG024600 Rh5BG366200 Rh5CG024000 Rh5DG023000 Rh6AG051900
rosa_wichuraiana	Rw3G005400 Rw3G005430 Rw5G002020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	349
AccI	GTMKAC	1 cut(s)	66
AciI	CCGC	6 cut(s)	361, 397, 422, 700, 850, 868
AclWI	GGATC	2 cut(s)	294, 307
AcsI	RAATTY	2 cut(s)	7, 579
AcuI	CTGAAG	1 cut(s)	849
AfaI	GTAC	4 cut(s)	38, 647, 664, 696
AfiI	CCNNNNNNNGG	3 cut(s)	160, 360, 655
AflII	CTTAAG	1 cut(s)	818
AflIII	ACRYGT	1 cut(s)	514
AgsI	TTSAA	3 cut(s)	404, 453, 578
AjnI	CCWGG	1 cut(s)	369
AluBI	AGCT	3 cut(s)	337, 539, 726
AluI	AGCT	3 cut(s)	337, 539, 726
Alw21I	GWGCWC	1 cut(s)	613
Alw26I	GTCTC	2 cut(s)	21, 417
Alw44I	GTGCAC	1 cut(s)	609
AlwI	GGATC	2 cut(s)	294, 307
ApaLI	GTGCAC	1 cut(s)	609
ApeKI	GCWGC	2 cut(s)	678, 852
ApoI	RAATTY	2 cut(s)	7, 579
Asp700I	GAANNNNTTC	1 cut(s)	834
AxyI	CCTNAGG	1 cut(s)	279
BaeGI	GKGCMC	1 cut(s)	613
BamHI	GGATCC	1 cut(s)	299
BbsI	GAAGAC	1 cut(s)	837
Bbv12I	GWGCWC	1 cut(s)	613
BbvI	GCAGC	2 cut(s)	665, 839
BccI	CCATC	4 cut(s)	550, 624, 631, 657
BceAI	ACGGC	2 cut(s)	626, 828
BciT130I	CCWGG	1 cut(s)	371
BcoDI	GTCTC	2 cut(s)	21, 417
BfaI	CTAG	4 cut(s)	168, 176, 561, 782
BfmI	CTRYAG	1 cut(s)	534
BfrI	CTTAAG	1 cut(s)	818
BisI	GCNGC	2 cut(s)	679, 853
BlsI	GCNGC	2 cut(s)	680, 854
BmcAI	AGTACT	2 cut(s)	38, 664
Bme1390I	CCNGG	1 cut(s)	371
BmiI	GGNNCC	1 cut(s)	301
BmrFI	CCNGG	1 cut(s)	371
BpiI	GAAGAC	1 cut(s)	837
BpuEI	CTTGAG	2 cut(s)	323, 674
BsaI	GGTCTC	2 cut(s)	21, 417
BsaJI	CCNNGG	3 cut(s)	370, 673, 772
Bsc4I	CCNNNNNNNGG	3 cut(s)	160, 360, 655
Bse21I	CCTNAGG	1 cut(s)	279
BseBI	CCWGG	1 cut(s)	371
BseDI	CCNNGG	3 cut(s)	370, 673, 772
BseGI	GGATG	2 cut(s)	619, 742
BseLI	CCNNNNNNNGG	3 cut(s)	160, 360, 655
BseMII	CTCAG	4 cut(s)	32, 50, 270, 473
BseRI	GAGGAG	3 cut(s)	260, 405, 408
BseSI	GKGCMC	1 cut(s)	613
BseXI	GCAGC	2 cut(s)	665, 839
BsiHKAI	GWGCWC	1 cut(s)	613
BslI	CCNNNNNNNGG	3 cut(s)	160, 360, 655
BsmAI	GTCTC	2 cut(s)	21, 417
BsmI	GAATGC	1 cut(s)	399
Bso31I	GGTCTC	2 cut(s)	21, 417
Bsp1286I	GDGCHC	1 cut(s)	613
Bsp143I	GATC	3 cut(s)	172, 299, 707
BspACI	CCGC	6 cut(s)	361, 397, 422, 700, 850, 868
BspCNI	CTCAG	4 cut(s)	31, 51, 271, 474
BspLI	GGNNCC	1 cut(s)	301
BspPI	GGATC	2 cut(s)	294, 307
BspTI	CTTAAG	1 cut(s)	818
BspTNI	GGTCTC	2 cut(s)	21, 417
BssECI	CCNNGG	3 cut(s)	370, 673, 772
BssMI	GATC	3 cut(s)	172, 299, 707
BssNAI	GTATAC	1 cut(s)	67
BssT1I	CCWWGG	2 cut(s)	673, 772
Bst1107I	GTATAC	1 cut(s)	67
Bst2UI	CCWGG	1 cut(s)	371
Bst4CI	ACNGT	3 cut(s)	51, 608, 694
BstAFI	CTTAAG	1 cut(s)	818
BstC8I	GCNNGC	3 cut(s)	215, 363, 367
BstDEI	CTNAG	6 cut(s)	18, 59, 279, 482, 704, 727
BstENI	CCTNNNNNAGG	1 cut(s)	158
BstF5I	GGATG	2 cut(s)	619, 742
BstKTI	GATC	3 cut(s)	175, 302, 710
BstMAI	GTCTC	2 cut(s)	21, 417
BstMBI	GATC	3 cut(s)	172, 299, 707
BstMWI	GCNNNNNNNGC	2 cut(s)	675, 849
BstNI	CCWGG	1 cut(s)	371
BstNSI	RCATGY	1 cut(s)	369
BstSCI	CCNGG	1 cut(s)	369
BstSFI	CTRYAG	1 cut(s)	534
BstSLI	GKGCMC	1 cut(s)	613
BstV1I	GCAGC	2 cut(s)	665, 839
BstV2I	GAAGAC	1 cut(s)	837
BstX2I	RGATCY	1 cut(s)	299
BstYI	RGATCY	1 cut(s)	299
BstZ17I	GTATAC	1 cut(s)	67
Bsu36I	CCTNAGG	1 cut(s)	279
BtsCI	GGATG	2 cut(s)	619, 742
BtsIMutI	CAGTG	1 cut(s)	141
Cac8I	GCNNGC	3 cut(s)	215, 363, 367
CseI	GACGC	1 cut(s)	658
Csp6I	GTAC	4 cut(s)	37, 646, 663, 695
CviAII	CATG	2 cut(s)	84, 366
CviQI	GTAC	4 cut(s)	37, 646, 663, 695
DdeI	CTNAG	6 cut(s)	18, 59, 279, 482, 704, 727
DpnI	GATC	3 cut(s)	174, 301, 709
DpnII	GATC	3 cut(s)	172, 299, 707
DrdI	GACNNNNNNGTC	1 cut(s)	349
DseDI	GACNNNNNNGTC	1 cut(s)	349
EciI	GGCGGA	2 cut(s)	411, 689
Eco130I	CCWWGG	2 cut(s)	673, 772
Eco31I	GGTCTC	2 cut(s)	21, 417
Eco57I	CTGAAG	1 cut(s)	849
Eco81I	CCTNAGG	1 cut(s)	279
EcoNI	CCTNNNNNAGG	1 cut(s)	158
EcoRII	CCWGG	1 cut(s)	369
EcoT14I	CCWWGG	2 cut(s)	673, 772
ErhI	CCWWGG	2 cut(s)	673, 772
FaeI	CATG	2 cut(s)	87, 369
FaiI	YATR	9 cut(s)	67, 85, 224, 293, 367, 438, 497, 499, 501
FatI	CATG	2 cut(s)	83, 365
FauI	CCCGC	1 cut(s)	354
FblI	GTMKAC	1 cut(s)	66
Fnu4HI	GCNGC	2 cut(s)	679, 853
FokI	GGATG	2 cut(s)	606, 749
Fsp4HI	GCNGC	2 cut(s)	679, 853
FspBI	CTAG	4 cut(s)	168, 176, 561, 782
GluI	GCNGC	2 cut(s)	679, 853
HgaI	GACGC	1 cut(s)	658
Hin1II	CATG	2 cut(s)	87, 369
HinfI	GANTC	1 cut(s)	103
Hpy166II	GTNNAC	3 cut(s)	67, 611, 646
Hpy188I	TCNGA	4 cut(s)	21, 60, 299, 511
Hpy188III	TCNNGA	4 cut(s)	176, 340, 575, 653
Hpy8I	GTNNAC	3 cut(s)	67, 611, 646
HpyAV	CCTTC	2 cut(s)	164, 866
HpyCH4III	ACNGT	3 cut(s)	51, 608, 694
HpyCH4IV	ACGT	1 cut(s)	516
HpyCH4V	TGCA	1 cut(s)	611
HpyF10VI	GCNNNNNNNGC	2 cut(s)	675, 849
HpyF3I	CTNAG	6 cut(s)	18, 59, 279, 482, 704, 727
HpySE526I	ACGT	1 cut(s)	516
Hsp92II	CATG	2 cut(s)	87, 369
Kzo9I	GATC	3 cut(s)	172, 299, 707
LmnI	GCTCC	2 cut(s)	200, 544
LpnPI	CCDG	9 cut(s)	87, 114, 212, 291, 347, 356, 383, 695, 736
Lsp1109I	GCAGC	2 cut(s)	665, 839
MaeI	CTAG	4 cut(s)	168, 176, 561, 782
MaeII	ACGT	1 cut(s)	516
MaeIII	GTNAC	2 cut(s)	139, 163
MalI	GATC	3 cut(s)	174, 301, 709
MboI	GATC	3 cut(s)	172, 299, 707
MboII	GAAGA	3 cut(s)	537, 618, 842
MflI	RGATCY	1 cut(s)	299
MhlI	GDGCHC	1 cut(s)	613
MluCI	AATT	4 cut(s)	7, 22, 460, 579
MmeI	TCCRAC	3 cut(s)	222, 244, 277
MroXI	GAANNNNTTC	1 cut(s)	834
MseI	TTAA	2 cut(s)	519, 819
MspA1I	CMGCKG	1 cut(s)	852
MspCI	CTTAAG	1 cut(s)	818
MspR9I	CCNGG	1 cut(s)	371
Mva1269I	GAATGC	1 cut(s)	399
MvaI	CCWGG	1 cut(s)	371
MwoI	GCNNNNNNNGC	2 cut(s)	675, 849
NdeII	GATC	3 cut(s)	172, 299, 707
NlaIII	CATG	2 cut(s)	87, 369
NlaIV	GGNNCC	1 cut(s)	301
NmuCI	GTSAC	2 cut(s)	139, 163
NspI	RCATGY	1 cut(s)	369
PaeI	GCATGC	1 cut(s)	369
PctI	GAATGC	1 cut(s)	399
PdmI	GAANNNNTTC	1 cut(s)	834
PfeI	GAWTC	1 cut(s)	103
PkrI	GCNGC	2 cut(s)	680, 854
Psp6I	CCWGG	1 cut(s)	369
PspGI	CCWGG	1 cut(s)	369
PspN4I	GGNNCC	1 cut(s)	301
PsuI	RGATCY	1 cut(s)	299
RsaI	GTAC	4 cut(s)	38, 647, 664, 696
RsaNI	GTAC	4 cut(s)	37, 646, 663, 695
SaqAI	TTAA	2 cut(s)	519, 819
SatI	GCNGC	2 cut(s)	679, 853
Sau3AI	GATC	3 cut(s)	172, 299, 707
ScaI	AGTACT	2 cut(s)	38, 664
ScrFI	CCNGG	1 cut(s)	371
SduI	GDGCHC	1 cut(s)	613
SfcI	CTRYAG	1 cut(s)	534
SmlI	CTYRAG	3 cut(s)	338, 653, 818
SmoI	CTYRAG	3 cut(s)	338, 653, 818
SphI	GCATGC	1 cut(s)	369
Sse9I	AATT	4 cut(s)	7, 22, 460, 579
SsiI	CCGC	6 cut(s)	361, 397, 422, 700, 850, 868
SspMI	CTAG	4 cut(s)	168, 176, 561, 782
StyD4I	CCNGG	1 cut(s)	369
StyI	CCWWGG	2 cut(s)	673, 772
TaaI	ACNGT	3 cut(s)	51, 608, 694
TaiI	ACGT	1 cut(s)	519
TaqI	TCGA	1 cut(s)	710
TaqII	GACCGA	1 cut(s)	359
TasI	AATT	4 cut(s)	7, 22, 460, 579
TatI	WGTACW	2 cut(s)	36, 662
TfiI	GAWTC	1 cut(s)	103
Tru1I	TTAA	2 cut(s)	519, 819
Tru9I	TTAA	2 cut(s)	519, 819
TscAI	CASTG	1 cut(s)	148
TseFI	GTSAC	2 cut(s)	139, 163
TseI	GCWGC	2 cut(s)	678, 852
Tsp45I	GTSAC	2 cut(s)	139, 163
TspDTI	ATGAA	3 cut(s)	72, 618, 753
TspRI	CASTG	1 cut(s)	148
Vha464I	CTTAAG	1 cut(s)	818
VneI	GTGCAC	1 cut(s)	609
XagI	CCTNNNNNAGG	1 cut(s)	158
XapI	RAATTY	2 cut(s)	7, 579
XbaI	TCTAGA	1 cut(s)	175
XceI	RCATGY	1 cut(s)	369
XmiI	GTMKAC	1 cut(s)	66
XmnI	GAANNNNTTC	1 cut(s)	834
XspI	CTAG	4 cut(s)	168, 176, 561, 782
ZrmI	AGTACT	2 cut(s)	38, 664

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.