Rh5CG024000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0006425
Physical Location & Seq
Reverse (-)
1518533 .. 1519585
1053 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG024000.1

Sequence Viewer

Length: 942 bp
ATGATTGACAAAGAGGTGTTGAAGGAGTGCGTTGATGGAGTTGGAAACCCAACACCTGAGGTAGAAAACCAGCTCAAGACCAATTTGTCCTACCAGCGGGTCCTTCAGGCACGCCAGGGAGTGCCTTATGGTGGTCTAATCCGCGTTCAATTGTGGCCTCCTCCTCCGCCCCGTGATGATTATAGGGCAACTGTGAGGTATATAGAATTCACAATAAGTCAACTTAAGAATGGAATCGTTTCACAACAGATGGTAGATTCGGCTAAGGAAACGGTACGCCGCCTTAGATCGAAAGGATATTCCAGCTTAGATGAGGATGAAGCAATCACTCTAAAGGACAGCATTCACTTCCTTGGTAGGCTAGAAAGCACCCCCTCTCCCTTTTGGGAGAGGTTTCTTAACTTTGCTGAAGACGTTCTAAGCCGTGTCCGCTGCCTCCGTCAAATGCAGGAAACATTGATTGATCAGCCAAATCTTGTAGAGCAAGAGAGACAATGCATAGCCGAAATTCAGAACAGAAATCTGCAAGAGTTAAATTACCCTAATCTGCAGAGTGTTAATCCTGAGGTTCTGACAGCTAAGTGTTCTAAAACCAACGAGAATATTAAATTACCCTTAGCTGACAATGGAGGAGAAAGGCAGCCAGAGTTCGTGATATTTGATGATGATGTAGAAATCTGCAAAAAACGGAAAAGAAGAGAGATGGAGGACTTGGAAGAAGCTTATAGTATACAGACCCAATTGGATGCAAAAGTTAATGATATTGAGGCGCTTAATATCAAGTTAGAAGAGATCAATGCTGGAAGAGAAAAAAATAAAAGTGAGGATCAGGAAGACTTGACAGCTTTACGTGTGCATGAGAAAAAGATAAACAACAGATTCAAGAAGATGGAGTTGGCTAGGAAAGCTCAATCAGAATTTGACGAATTTGATCGCCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

313

Amino Acids

36.37

Weight (kDa)

5.16

Isoelectric Point (pI)

53.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 85
AccI GTMKAC 1 cut(s) 730
AccII CGCG 1 cut(s) 144
AciI CCGC 5 cut(s) 97, 142, 167, 280, 430
AclWI GGATC 1 cut(s) 834
AcsI RAATTY 4 cut(s) 206, 507, 917, 926
AcuI CTGAAG 2 cut(s) 89, 429
AfaI GTAC 1 cut(s) 276
AfiI CCNNNNNNNGG 2 cut(s) 96, 131
AflII CTTAAG 1 cut(s) 224
AflIII ACRYGT 1 cut(s) 850
AgsI TTSAA 3 cut(s) 22, 149, 883
AjnI CCWGG 1 cut(s) 114
AjuI GAANNNNNNNTTGG 2 cut(s) 878, 910
AluBI AGCT 7 cut(s) 73, 306, 578, 620, 722, 845, 908
AluI AGCT 7 cut(s) 73, 306, 578, 620, 722, 845, 908
Alw26I GTCTC 1 cut(s) 484
AlwI GGATC 1 cut(s) 834
AoxI GGCC 1 cut(s) 155
ApeKI GCWGC 2 cut(s) 432, 640
ApoI RAATTY 4 cut(s) 206, 507, 917, 926
Asp700I GAANNNNTTC 2 cut(s) 238, 414
AspLEI GCGC 1 cut(s) 772
AspS9I GGNCC 1 cut(s) 100
AvaII GGWCC 1 cut(s) 100
AxyI CCTNAGG 2 cut(s) 57, 564
BbsI GAAGAC 2 cut(s) 417, 840
BbvI GCAGC 2 cut(s) 419, 652
BccI CCATC 4 cut(s) 29, 244, 697, 883
BceAI ACGGC 1 cut(s) 408
BciT130I CCWGG 1 cut(s) 116
BclI TGATCA 1 cut(s) 463
BcoDI GTCTC 1 cut(s) 484
BfaI CTAG 2 cut(s) 362, 900
BfmI CTRYAG 1 cut(s) 548
BfoI RGCGCY 1 cut(s) 773
BfrI CTTAAG 1 cut(s) 224
BisI GCNGC 3 cut(s) 280, 433, 641
BlsI GCNGC 3 cut(s) 281, 434, 642
Bme1390I CCNGG 1 cut(s) 116
Bme18I GGWCC 1 cut(s) 100
BmgT120I GGNCC 1 cut(s) 100
BmiI GGNNCC 1 cut(s) 101
BmrFI CCNGG 1 cut(s) 116
BmsI GCATC 1 cut(s) 736
BpiI GAAGAC 2 cut(s) 417, 840
Bpu10I CCTNAGC 2 cut(s) 264, 616
BpuEI CTTGAG 1 cut(s) 59
BsaAI YACGTR 1 cut(s) 851
BsaJI CCNNGG 2 cut(s) 115, 352
BsaXI ACNNNNNCTCC 2 cut(s) 361, 391
Bsc4I CCNNNNNNNGG 2 cut(s) 96, 131
Bse21I CCTNAGG 2 cut(s) 57, 564
BseBI CCWGG 1 cut(s) 116
BseDI CCNNGG 2 cut(s) 115, 352
BseGI GGATG 2 cut(s) 322, 751
BseLI CCNNNNNNNGG 2 cut(s) 96, 131
BseMII CTCAG 2 cut(s) 48, 555
BseRI GAGGAG 3 cut(s) 150, 153, 645
BseXI GCAGC 2 cut(s) 419, 652
Bsh1236I CGCG 1 cut(s) 144
BshFI GGCC 1 cut(s) 157
BslI CCNNNNNNNGG 2 cut(s) 96, 131
BsmAI GTCTC 1 cut(s) 484
BsmI GAATGC 1 cut(s) 342
BsnI GGCC 1 cut(s) 157
Bsp143I GATC 5 cut(s) 287, 463, 792, 826, 931
BspACI CCGC 5 cut(s) 97, 142, 167, 280, 430
BspANI GGCC 1 cut(s) 157
BspCNI CTCAG 2 cut(s) 49, 556
BspFNI CGCG 1 cut(s) 144
BspLI GGNNCC 1 cut(s) 101
BspMAI CTGCAG 1 cut(s) 552
BspPI GGATC 1 cut(s) 834
BspTI CTTAAG 1 cut(s) 224
BssECI CCNNGG 2 cut(s) 115, 352
BssMI GATC 5 cut(s) 287, 463, 792, 826, 931
BssNAI GTATAC 1 cut(s) 731
BssT1I CCWWGG 1 cut(s) 352
Bst1107I GTATAC 1 cut(s) 731
Bst2UI CCWGG 1 cut(s) 116
Bst4CI ACNGT 2 cut(s) 193, 274
Bst6I CTCTTC 3 cut(s) 691, 783, 799
BstAFI CTTAAG 1 cut(s) 224
BstBAI YACGTR 1 cut(s) 851
BstC8I GCNNGC 1 cut(s) 112
BstDEI CTNAG 8 cut(s) 57, 264, 284, 307, 419, 564, 579, 616
BstF5I GGATG 2 cut(s) 322, 751
BstFNI CGCG 1 cut(s) 144
BstH2I RGCGCY 1 cut(s) 773
BstHHI GCGC 1 cut(s) 772
BstKTI GATC 5 cut(s) 290, 466, 795, 829, 934
BstMAI GTCTC 1 cut(s) 484
BstMBI GATC 5 cut(s) 287, 463, 792, 826, 931
BstMWI GCNNNNNNNGC 2 cut(s) 429, 905
BstNI CCWGG 1 cut(s) 116
BstSCI CCNGG 1 cut(s) 114
BstSFI CTRYAG 1 cut(s) 548
BstUI CGCG 1 cut(s) 144
BstV1I GCAGC 2 cut(s) 419, 652
BstV2I GAAGAC 2 cut(s) 417, 840
BstZ17I GTATAC 1 cut(s) 731
Bsu36I CCTNAGG 2 cut(s) 57, 564
BsuRI GGCC 1 cut(s) 157
BtsCI GGATG 2 cut(s) 322, 751
Cac8I GCNNGC 1 cut(s) 112
CfoI GCGC 1 cut(s) 772
Cfr13I GGNCC 1 cut(s) 100
Csp6I GTAC 1 cut(s) 275
CviAII CATG 1 cut(s) 857
CviQI GTAC 1 cut(s) 275
DdeI CTNAG 8 cut(s) 57, 264, 284, 307, 419, 564, 579, 616
DpnI GATC 5 cut(s) 289, 465, 794, 828, 933
DpnII GATC 5 cut(s) 287, 463, 792, 826, 931
DrdI GACNNNNNNGTC 1 cut(s) 85
DseDI GACNNNNNNGTC 1 cut(s) 85
Eam1104I CTCTTC 3 cut(s) 691, 783, 799
EarI CTCTTC 3 cut(s) 691, 783, 799
EciI GGCGGA 1 cut(s) 156
Eco130I CCWWGG 1 cut(s) 352
Eco47I GGWCC 1 cut(s) 100
Eco57I CTGAAG 2 cut(s) 89, 429
Eco81I CCTNAGG 2 cut(s) 57, 564
EcoO109I RGGNCCY 1 cut(s) 100
EcoRI GAATTC 1 cut(s) 206
EcoRII CCWGG 1 cut(s) 114
EcoT14I CCWWGG 1 cut(s) 352
EcoT22I ATGCAT 1 cut(s) 500
ErhI CCWWGG 1 cut(s) 352
FaeI CATG 1 cut(s) 860
FaiI YATR 8 cut(s) 129, 183, 201, 203, 500, 726, 731, 858
FatI CATG 1 cut(s) 856
FauI CCCGC 1 cut(s) 90
FbaI TGATCA 1 cut(s) 463
FblI GTMKAC 1 cut(s) 730
Fnu4HI GCNGC 3 cut(s) 280, 433, 641
FokI GGATG 2 cut(s) 329, 758
Fsp4HI GCNGC 3 cut(s) 280, 433, 641
FspBI CTAG 2 cut(s) 362, 900
GlaI GCGC 1 cut(s) 771
GluI GCNGC 3 cut(s) 280, 433, 641
HaeII RGCGCY 1 cut(s) 773
HaeIII GGCC 1 cut(s) 157
HhaI GCGC 1 cut(s) 772
Hin1II CATG 1 cut(s) 860
Hin6I GCGC 1 cut(s) 770
HinP1I GCGC 1 cut(s) 770
HincII GTYRAC 1 cut(s) 221
HindII GTYRAC 1 cut(s) 221
HindIII AAGCTT 1 cut(s) 720
HinfI GANTC 3 cut(s) 234, 257, 879
Hpy166II GTNNAC 2 cut(s) 221, 731
Hpy188I TCNGA 3 cut(s) 513, 573, 916
Hpy188III TCNNGA 5 cut(s) 76, 563, 652, 830, 883
Hpy8I GTNNAC 2 cut(s) 221, 731
HpyAV CCTTC 2 cut(s) 16, 113
HpyCH4III ACNGT 2 cut(s) 193, 274
HpyCH4IV ACGT 2 cut(s) 414, 850
HpyCH4V TGCA 7 cut(s) 448, 498, 526, 550, 681, 749, 856
HpyF10VI GCNNNNNNNGC 2 cut(s) 429, 905
HpyF3I CTNAG 8 cut(s) 57, 264, 284, 307, 419, 564, 579, 616
HpySE526I ACGT 2 cut(s) 414, 850
Hsp92II CATG 1 cut(s) 860
HspAI GCGC 1 cut(s) 770
Ksp22I TGATCA 1 cut(s) 463
Kzo9I GATC 5 cut(s) 287, 463, 792, 826, 931
Lsp1109I GCAGC 2 cut(s) 419, 652
LweI GCATC 1 cut(s) 736
MaeI CTAG 2 cut(s) 362, 900
MaeII ACGT 2 cut(s) 414, 850
MalI GATC 5 cut(s) 289, 465, 794, 828, 933
MboI GATC 5 cut(s) 287, 463, 792, 826, 931
MboII GAAGA 7 cut(s) 422, 708, 728, 800, 816, 845, 898
MfeI CAATTG 2 cut(s) 149, 740
MluCI AATT 9 cut(s) 82, 149, 206, 507, 535, 608, 740, 917, 926
MmeI TCCRAC 1 cut(s) 22
Mph1103I ATGCAT 1 cut(s) 500
MroXI GAANNNNTTC 2 cut(s) 238, 414
MseI TTAA 7 cut(s) 225, 399, 533, 558, 606, 756, 774
MspA1I CMGCKG 2 cut(s) 97, 432
MspCI CTTAAG 1 cut(s) 224
MspR9I CCNGG 1 cut(s) 116
MunI CAATTG 2 cut(s) 149, 740
Mva1269I GAATGC 1 cut(s) 342
MvaI CCWGG 1 cut(s) 116
MvnI CGCG 1 cut(s) 144
MwoI GCNNNNNNNGC 2 cut(s) 429, 905
NdeII GATC 5 cut(s) 287, 463, 792, 826, 931
NlaIII CATG 1 cut(s) 860
NlaIV GGNNCC 1 cut(s) 101
NsiI ATGCAT 1 cut(s) 500
PctI GAATGC 1 cut(s) 342
PdmI GAANNNNTTC 2 cut(s) 238, 414
PfeI GAWTC 3 cut(s) 234, 257, 879
PkrI GCNGC 3 cut(s) 281, 434, 642
Ppu21I YACGTR 1 cut(s) 851
PpuMI RGGWCCY 1 cut(s) 100
Psp5II RGGWCCY 1 cut(s) 100
Psp6I CCWGG 1 cut(s) 114
PspGI CCWGG 1 cut(s) 114
PspN4I GGNNCC 1 cut(s) 101
PspPI GGNCC 1 cut(s) 100
PspPPI RGGWCCY 1 cut(s) 100
PstI CTGCAG 1 cut(s) 552
RsaI GTAC 1 cut(s) 276
RsaNI GTAC 1 cut(s) 275
SaqAI TTAA 7 cut(s) 225, 399, 533, 558, 606, 756, 774
SatI GCNGC 3 cut(s) 280, 433, 641
Sau3AI GATC 5 cut(s) 287, 463, 792, 826, 931
Sau96I GGNCC 1 cut(s) 100
ScrFI CCNGG 1 cut(s) 116
SfaNI GCATC 1 cut(s) 736
SfcI CTRYAG 1 cut(s) 548
SinI GGWCC 1 cut(s) 100
SmlI CTYRAG 2 cut(s) 74, 224
SmoI CTYRAG 2 cut(s) 74, 224
Sse9I AATT 9 cut(s) 82, 149, 206, 507, 535, 608, 740, 917, 926
SsiI CCGC 5 cut(s) 97, 142, 167, 280, 430
SspI AATATT 1 cut(s) 604
SspMI CTAG 2 cut(s) 362, 900
StyD4I CCNGG 1 cut(s) 114
StyI CCWWGG 1 cut(s) 352
TaaI ACNGT 2 cut(s) 193, 274
TaiI ACGT 2 cut(s) 417, 853
TaqI TCGA 1 cut(s) 290
TasI AATT 9 cut(s) 82, 149, 206, 507, 535, 608, 740, 917, 926
TauI GCSGC 1 cut(s) 282
TfiI GAWTC 3 cut(s) 234, 257, 879
Tru1I TTAA 7 cut(s) 225, 399, 533, 558, 606, 756, 774
Tru9I TTAA 7 cut(s) 225, 399, 533, 558, 606, 756, 774
TseI GCWGC 2 cut(s) 432, 640
TspDTI ATGAA 1 cut(s) 333
TspGWI ACGGA 2 cut(s) 428, 703
Vha464I CTTAAG 1 cut(s) 224
VpaK11BI GGWCC 1 cut(s) 100
XapI RAATTY 4 cut(s) 206, 507, 917, 926
XmiI GTMKAC 1 cut(s) 730
XmnI GAANNNNTTC 2 cut(s) 238, 414
XspI CTAG 2 cut(s) 362, 900
Zsp2I ATGCAT 1 cut(s) 500
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.